RNA id: XM_036979817.1


Basic Information

Item Value
RNA id XM_036979817.1
length 2174
RNA type mRNA
GC content 0.43
exon number 11
gene id sftpbb
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 30199594 ~ 30209590 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTAACATAGGCTTTGGGGCACTAAGAgtcctctatctaactctatggCCTAAACGCATTATTCCGTCTCTAATCTGTGCTTCCGTATTCATAGCCATCGGAAAGATCATACTACGGTCACTTTTATATAGGACCGACTGTAAAATCATTCTCTGTCCTCCCTTACAATGGCGTTTTTACAATTGATTGTCTTGATCTTCATGGCATCTTTTTGTATTGGTGAGACCATGGTCATCGGTGAGCCTACCAGGCCCAAGTTGGGCATCACACAGCTGTCCTCAACAACTGACATCTGCTCAGACTGCAGCCAGATCATTGAGCTATTCACAGACATGATCTCCAACACTGACACCCAGGAGCTGATCCACAACACCCTGGATGCCCTGTGTCTGCGCCTCCCCATAGTTGAGGCTCAAAGCCACTGTATGTCCCAGGTGCATATGTACCTGCCCCAAGCCCTCCAGTACCTCACTGGCATACTGAAGCCAGGTGAGACGTGTATGGTCCTGGGCCTGTGTGCTGTCCGCTCAGAGAGAAAAGCGCCTGAACCGCTTCCTCCCACTTTCAATGACATCGATCTTTCGAATGCTGTACTTGACTCAGGCACCAGCCCAGAGGTGCAGATCAGCCCACAGTGTACCTTCTGTGTTTATCTTATGAAGAAACTGGAGAGCATGTTGCCTACAGAGAAGACTGAGGATGCCATAGTGAAGCTAATGGGTGAGGTGTGTGGCCTCCTGCCTGCAAGCTACAAAGACCAGTGTGACGACTTCATCAACAAGTATGGAAAGGAGATTGTTGACTTCCTGCTGTCGTCAGCCGCCCCTCACTCCATCTGTGCCCTGCTGCACCTGTGTCTGTTCCAGGAGACCCCCAGCATGGAGATGCCCCTCCCCTCTGACTGTGATTCCTGCCGTACGCTGGCGGTTCTGAGCCGGCTCCACCTGGGTCTCAACGCCACTGAACCTCAGACCTCCTCTTTCCTCCAGTCTGTCTGCCTGCAGCACCCCAATGCCATCCCCAAGTGTGAAATGTTCACCAAACTCTACGGTCCCAGACTACAGAAGGTTCTGGGAAGCCAAATGGATGCTCCGGATACATGTGAGAGAGCTGATATGTGTGTTGCTGTGAAAGAGCAGCATCTTCTGGGGAAGAACCAGTGTACCTGGGGACCCAGTTACATCTGCAGGGACTTGAAAACTGCTCAGGGGTGTGGTATGGTAGACTTCTGCCAGAAGGTGATGTGGAACTAGAGCTGAGAACCACTCCCAGAGTTCTCCCTCCATGGATGAAGCTGATGATTTAACTGCCAAATATATGTTTTAGTATTGCACTTGTTACTGATTGCACTATTGCCTTTGACTTTTCTTTGCCACAgttttaaattaaatattttgTCAACTTCATTTTACAGGTCATCTGATATTGCACTGAGCAATGAGTAAAATTTCTGGATATTTAATTCCTTGATTTTCACTTCTGGTAGACTGTTGTAACACTGAGATGATTTGATGTCAGGTTTGATTTGCACTGGGTGGGCTGTTAGGAGTACAGTAAGTAATTTAGTCAAGCAATGTAAATAATTGACTTTAAATAATATTGGACCTATTTAAGCACATATCCACAAGTATAACAATTTACATTTGAAATGTGACTTTTCAGTTGTAGGTAATAGTATCTTCATATACAATCAGTCATAATCAGGAAGAACATAGTAAATGTAAGTGGCAAAGTGTCTTGAAGAAATTAGTGAACATGTACCTCCTGTTGAGAAACCCTTTCAATCAGTAATGTGAAcattaattaaatgtattcatttaATGTACAATTGTTAGATTTCATTTTTGTGATCCAACTAAATGTACATGAGTATTTATCCTATAATGCTTACAATAGGAACATCCTTTTGCAACCCTCACTATTTGGTAATGTCAACATTTTATTTCTTGTTTTTATTGCCATGTTTCACAAATAAACTAAAAAGACCCAACCCAAATCAATACATTTCATCCAAAAAGGTAAAACATCAAATAATATTAATGACTGGAAACAGACATTTCAAAGCTGGTTTATTCCACCATTTACAGTTAAAAGTTGAATAGTAGACATTGTTTTCTCTATCCAAAATCCACCAATAAAAAGACCTGGTCCTCATGTGGTGGGGGCTTACCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU562187 lncRNA downstream 3477 30192275 ~ 30196117 (-) True G494826
TU562182 lncRNA downstream 14074 30185304 ~ 30185520 (-) True G494821
TU562137 lncRNA downstream 19901 30174607 ~ 30179693 (-) True G494785
TU562138 lncRNA downstream 21100 30173830 ~ 30178494 (-) False G494785
TU562142 lncRNA downstream 35066 30164024 ~ 30164528 (-) True G494787
TU562194 lncRNA upstream 8344 30217934 ~ 30218515 (-) True G494833
TU562202 lncRNA upstream 21144 30230734 ~ 30230958 (-) True G494841
TU562212 lncRNA upstream 27461 30237051 ~ 30237252 (-) True G494850
TU562304 lncRNA upstream 107696 30317286 ~ 30317535 (-) True G494929
TU562896 lncRNA upstream 116668 30326258 ~ 30327615 (-) False G495447
XM_021606082.2 mRNA downstream 7779 30189572 ~ 30191815 (-) True LOC110525709
XM_036981739.1 mRNA downstream 91899 30105365 ~ 30107695 (-) False LOC110525706
XM_021606074.2 mRNA downstream 218816 29976158 ~ 29980778 (-) True LOC110525703
XR_005052057.1 mRNA downstream 224712 29970067 ~ 29974882 (-) True LOC118964857
XM_021606065.2 mRNA downstream 329187 29863198 ~ 29870407 (-) False kmt5ab
XM_036981740.1 mRNA upstream 101470 30311060 ~ 30324946 (-) True LOC118965020
XM_021606091.2 mRNA upstream 316444 30526034 ~ 30527686 (-) False LOC110525714
XM_021606093.2 mRNA upstream 327676 30537266 ~ 30553741 (-) True LOC110525715
XM_021606099.2 mRNA upstream 351831 30561421 ~ 30579113 (-) False si:ch211-102c2.8
XM_036979850.1 mRNA upstream 352028 30561618 ~ 30579045 (-) False si:ch211-102c2.8
TU561865 other downstream 524021 29675323 ~ 29675573 (-) True G494542
TU561743 other downstream 696203 29502253 ~ 29503391 (-) True LOC110525684
TU561696 other downstream 716248 29478655 ~ 29483346 (-) True LOC110525681
TU561692 other downstream 784280 29411215 ~ 29415314 (-) True G494389
TU559292 other downstream 2364292 27827231 ~ 27835302 (-) False LOC110525655
TU562998 other upstream 317096 30526686 ~ 30527546 (-) True LOC110525714
TU563013 other upstream 335812 30545402 ~ 30549450 (-) True G495554
TU563022 other upstream 365528 30575118 ~ 30575573 (-) True G495560
TU564400 other upstream 1451803 31661393 ~ 31661618 (-) True G496772
TU564405 other upstream 1461388 31670978 ~ 31671927 (-) True G496777

Expression Profile