RNA id: XM_036981740.1


Basic Information

Item Value
RNA id XM_036981740.1
length 3186
RNA type mRNA
GC content 0.63
exon number 5
gene id LOC118965020
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 30311060 ~ 30324946 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGTCCGGAGCCTCTGGCGACGGTTCCATGGTATGGAGCCTCTGGCGACGGTTCCACGTAAtggagcctccggcgatgatccaagGTCCAGAGTCCCCGGCGACGATCCGGAGGGATCCGCGAGCAGAGCAGGATCTACGTCCcaaaccggagccgccaccgaggctagatgcccacccggaccctcctcCATAGAGTCAGctgcctgtgaACCAGCCGACCGCCGCCAGAGGCTCCGGACTGCCGACCGCCGCCAGAGGCTCCGGACTGCCGACCaccgccggaggctccggactgccgACCGCCGCCGGAGACTCCGGACTGCCGACCATCGCTTGAGGCTCTGGACTGCCAACCGTCGCGTGGAGCTGGcccaggacATGGTCCTACCTAGGTTTGAGTCTGGGACTGAGGGGGACAGCACTGAGTCTGGGGCAGAGGGGGACAGAACTGAGTCTGGGGCAGAAGGGGACAGAACTGAGTCTGGGGCAGAGGGGGACAGAACTGAGTCTGCGGCAGAGGGGGACAGCACTGAGTCTGGGGCAGAGGGGGACAGCACTGAGTCTGGGACTGAGGGGGACAGCACTGAGTCTGGGGCAGAGGGGGACAGAACTGAGTCTGGGGCAGAGGGGGACAGAACTGAGTCTGGGGCAGAGGGGGACAGAACTGAGTCTGCGGCAGAGGGGGACAGCACTGAGTCTGGGGCAGAGGGGGACAGCACTGAGTCTGGGGCAGAGGGGGACAGCACTGAGTCTGGGGCAGAGGGGGACAGCACTGAGTCTGGGGCAGAGGGGGACAGCACTGAGTCTGGGGCAGAGGGGGACAGAACTGAGTCTGGGGCAGAGGGGGACAGAACTGAGTCTGGGGCAGAGGGGGACAGGACTGAGTCTGGAGCAGAGGGGGACAGAACTGAGTCTGGGGTAGAGAAGGACAGAACTGAGTCTGGAGCAGAGGGGGACAGAACTGAGTCTGGGGCAGAGAAGGACAGAACTGAGTCTGGGGTAGAGAAGGACAGAACTGAGTCTGGAGCAGAGGAGGACAGAACTGAGTCTGGGGTAGAGGGGAACAGAACTGAGTCTGGGGCAGAGGGGGACAGAACTGAGTCTGGGGCAGAGGGGGACAGGACTGAGTCTGGAGCAGAGGGGGACAGAACTGAGTCTGGGGTAGAGAAGGACAGAACTGAGTCTGGAGCAGAGGGGGACAGAACTGAGTCTGGGGCAGAGAAGGACAGGACTGAGTCTGGGGTAGAGAAGGACAGAACTGAGTCTGGAGCAGAGGAGGACAGAACTGAGTCTGGGGTAGAGGGGAACAGAACTGAGTCTGGGGCAGAGGGGGACAGAACTGAGTCTGGAGCAGAGGGGGACAGAACTGAGTCTGGGGTAGAGGGGAACAGAACTGAGTCTGGAGCAGAGGGGGACAGAACTGAGTCTGGGGTAGAGAAGGACAGAACTGAGTCTGGAGCAGAGGAGGACAGGAATGAGGCTGTGGCTGAGGGGAAAAGGACTGAGACTGTGGCTGAGGGGGACAGGACTGAGGCTGTGGCTGAGGGGAAAGGACTGAGGCTGTGGCTGAGGGGGACAGGACTGAGACTGTGGCTGAGGGGGACAGGACTGAGGCTGTGGCTGAGGGGGACAGGACTGAGGCTAACTGAGGCTGTGGCTGAGGGGAACAGGACTGAGGCTGAGGGGGACAGGACTGAGGCTGAGGGGGACAGGACTGAGGCTGTGAATGAGGGGGACAGGACTGAGGCTGAGGGGGACAGGACTGAGGCTGTGGCTGAGGGGGACAGAACTGAGTCTGGGGTAGAGAAGGACAGAACTGAGTCTGGAGCAGAGGAGGACAGGAATGAGGCTGTGGCTGAGGGGAAAAGGACTGAGACTGTGGCTGAGGGGGACAGGACTGAGGCTGTGGCTGAGGGGGACAGGACTGAGGCTGTGGCTGAGGGGGACAGGACTGAGGCTGTGGATGAGGGGGACAGGACTGAGGCTGTGGCTGAGGGGGACAGAACTGAGTCTGGGGCAGAGGGGGACAGAACTGAGTCTGGGGCAGAGGGGGACAGAACTGAGTCTGGGGCAGAGGGGGACAGCACTGAGTCTGGGGCAGAGGGGGACAGCACTGAGTCTGGGGCAGAGGGGGACAGCACTGAGTCTGGGGCAGAGGGGGACAGCACTGAGTCTGGGGCAGAGGGGGACAGCACTGAGTCTGGGGCAGAGGGGGACAGAACTGAGTCTGGGGCTAAGGGGAAAGGACTGAGGCTAACTGAGGCTGTGGCTGAGGGGAACAGGACTGAGGCTGAGGGGGACAGGACTGAGGCTGAGGGGGACAGGACTGAGGCTGTGAATGAGGGGGACAGGACTGAGGCTGAGGGGGACAGGACTGAGGCTGTGGCTGAGGGGGACAGAACTGAGTCTGGGGTAGAGAAGGACAGAACTGAGTCTGGAGCAGAGGAGGACAGGAATGAGGCTGTGGCTGAGGGGAAAAGGACTGAGACTGTGGCTGAGGGGGACAGGACTGAGGCTGTGGCTGAGGGGGACAGGACTGAGGCTGTGGCTGAGGGGGACAGGACTGAGGCTGTGGATGAGGGGGACAGGACTGAGGCTGTGGCTGAGGGGGACAGAACTGAGTCTGGGGCAGAGGGGGACAGAACTGAGTCTGGGGCAGAGGGGGACAGAACTGAGTCTGGGGCAGAGGGGGACAGCACTGAGTCTGGGGCAGAGGGGGACAGCACTGAGTCTGGGGCAGAGGGGGACAGCACTGAGTCTGGGGCAGAGGGGGACAGCACTGAGTCTGGGGCAGAGGGGGACAGCACTGAGTCTGGGGCAGAGGGGGACAGAACTGAGTCTGGGGCAGAGGGGGACAGAACTGAGTCTGGGGCAGAGGGGGACAGGACTGAGTCTGGAGCAGAGGGGGACAGAACTGAGTCTGGGGTAGAGGGGAACAGAACTGAGTCTGGAGCAGAGGGGGACAGAACTGAGTCTGGAGCAGAGGAGGACAGGAATGAGGCTGTGGCTGAGGGGAAAAGGACTGAGACTGTGGCTGAGGGGGACAGGACTGAGGCTGTGGCTGAGGGGAAAGGACTGAGGCTGTGGCTGAGGGGGACAGGACTGAGCCTGTGGCTGAGGGGGACAGGACTGAGGCTGTGGCTGAGGGGGACAGGACTGAGGCTGTGGCTGAGGGGGACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU562212 lncRNA downstream 73808 30237051 ~ 30237252 (-) True G494850
TU562202 lncRNA downstream 80102 30230734 ~ 30230958 (-) True G494841
TU562194 lncRNA downstream 92545 30217934 ~ 30218515 (-) True G494833
TU562187 lncRNA downstream 114943 30192275 ~ 30196117 (-) True G494826
TU562182 lncRNA downstream 125540 30185304 ~ 30185520 (-) True G494821
TU562896 lncRNA upstream 1312 30326258 ~ 30327615 (-) False G495447
TU562899 lncRNA upstream 1312 30326258 ~ 30327615 (-) True G495447
TU562935 lncRNA upstream 53299 30378245 ~ 30449990 (-) True G495480
TU562962 lncRNA upstream 103579 30428525 ~ 30444143 (-) True G495504
TU562975 lncRNA upstream 143471 30468417 ~ 30468639 (-) True G495516
XM_036979817.1 mRNA downstream 101470 30199594 ~ 30209590 (-) True sftpbb
XM_021606082.2 mRNA downstream 119245 30189572 ~ 30191815 (-) True LOC110525709
XM_036981739.1 mRNA downstream 203365 30105365 ~ 30107695 (-) False LOC110525706
XM_021606074.2 mRNA downstream 330282 29976158 ~ 29980778 (-) True LOC110525703
XR_005052057.1 mRNA downstream 336178 29970067 ~ 29974882 (-) True LOC118964857
XM_021606091.2 mRNA upstream 201088 30526034 ~ 30527686 (-) False LOC110525714
XM_021606093.2 mRNA upstream 212320 30537266 ~ 30553741 (-) True LOC110525715
XM_021606099.2 mRNA upstream 236475 30561421 ~ 30579113 (-) False si:ch211-102c2.8
XM_036979850.1 mRNA upstream 236672 30561618 ~ 30579045 (-) False si:ch211-102c2.8
XM_036979847.1 mRNA upstream 236672 30561618 ~ 30579112 (-) False si:ch211-102c2.8
TU561865 other downstream 635487 29675323 ~ 29675573 (-) True G494542
TU561743 other downstream 807669 29502253 ~ 29503391 (-) True LOC110525684
TU561696 other downstream 827714 29478655 ~ 29483346 (-) True LOC110525681
TU561692 other downstream 895746 29411215 ~ 29415314 (-) True G494389
TU559292 other downstream 2475758 27827231 ~ 27835302 (-) False LOC110525655
TU562998 other upstream 201740 30526686 ~ 30527546 (-) True LOC110525714
TU563013 other upstream 220456 30545402 ~ 30549450 (-) True G495554
TU563022 other upstream 250172 30575118 ~ 30575573 (-) True G495560
TU564400 other upstream 1336447 31661393 ~ 31661618 (-) True G496772
TU564405 other upstream 1346032 31670978 ~ 31671927 (-) True G496777

Expression Profile