RNA id: TCONS_00033354


Basic Information

Item Value
RNA id TCONS_00033354
length 869
lncRNA type intronic
GC content 0.40
exon number 5
gene id XLOC_016240
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 14514166 ~ 14515594 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACACacatgaggaagctcgactcagcTTGGCTTGCAGACAGATAAGGACAGTGATTGCCTGTCATACACCTAAAgaaagaacaggGGCATTAAAGACACAACTATAGTGaacgtgatgaagaaaaattatttggaacaaagaggctggagaAAAAACTGATATGAAGATTTAAGAAATTGATGCAGCACCGCAAGTACCATCACCACCAATGACAATGGCAGGATCCTTAAgaacaccatcaagatgcacagatgctGTACATttcagtacacctatgaacatttacagtccttgTTCAAGTACAGTTGGAGATCAAGACAACTTATTGCAACTcgtcatgtctttcacgactgataaaagttttaaaatcatgtgacgtcataaagcagcaactgtgcctgattctcacaaatcagcaaaaccaaaacagacgtgatgaaattccagatgtaaacacatttgacctttctttgtccaatttgatttggaaaaacttgaaaatcaactaaacgagcagcccgaacaaatgaagaaactggtagcctactttggaATCATTGGTGTTTTCCACTAAGCAGTTTGGTGTGTCCCGGGAAAGCTTTTGGCTCACTTTTTGGCTGAACAAATTAACTGGAGCAGGGCAAACCAAAATGTGGCCTTTCATGCACTCTCCCTTAGGACTGTCTAGTCAATGTAGTGAGGagaaatgtccataccacgccactgataaagaagtggaaaaatgcattacaaggtggcTACAACGTGCTCCTGACAGGGCTGGAGGAAGGAgggaagaagagaaagctaatgtgtcaaatgtctacatcaataatttattttttaaacaacattttaagtgtatt

Function

GO:

id name namespace
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1903225 negative regulation of endodermal cell differentiation biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

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Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032026 lncRNA downstream 22323 14489942 ~ 14491843 (-) True XLOC_016239
TCONS_00033790 lncRNA downstream 73786 14438985 ~ 14440380 (-) True XLOC_016237
TCONS_00032023 lncRNA downstream 87499 14394120 ~ 14426667 (-) True XLOC_016236
TCONS_00032018 lncRNA downstream 242091 14271716 ~ 14272075 (-) True XLOC_016234
TCONS_00032015 lncRNA downstream 485005 14021956 ~ 14029161 (-) True XLOC_016233
TCONS_00033791 lncRNA upstream 149055 14664649 ~ 14676427 (-) True XLOC_016242
TCONS_00033792 lncRNA upstream 221449 14737043 ~ 14831123 (-) True XLOC_016243
TCONS_00033357 lncRNA upstream 273189 14788783 ~ 14789247 (-) True XLOC_016244
TCONS_00033358 lncRNA upstream 418204 14933798 ~ 14949626 (-) True XLOC_016246
TCONS_00032031 lncRNA upstream 422992 14938586 ~ 14940003 (-) True XLOC_016247
TCONS_00032019 mRNA downstream 123539 14276639 ~ 14390627 (-) False XLOC_016235
TCONS_00032020 mRNA downstream 126831 14278841 ~ 14387335 (-) False XLOC_016235
TCONS_00032022 mRNA downstream 126831 14278898 ~ 14387335 (-) False XLOC_016235
TCONS_00032021 mRNA downstream 126831 14278898 ~ 14387335 (-) True XLOC_016235
TCONS_00032017 mRNA downstream 242083 14208158 ~ 14272083 (-) False XLOC_016234
TCONS_00032027 mRNA upstream 139540 14655134 ~ 14656669 (-) True XLOC_016241
TCONS_00032028 mRNA upstream 274700 14790294 ~ 14798295 (-) False XLOC_016245
TCONS_00032029 mRNA upstream 275783 14791377 ~ 14798305 (-) False XLOC_016245
TCONS_00032030 mRNA upstream 276357 14791951 ~ 14793343 (-) True XLOC_016245
TCONS_00032032 mRNA upstream 466789 14982383 ~ 14987282 (-) True XLOC_016249
TCONS_00031998 other downstream 1259369 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00031991 other downstream 2289627 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031983 other downstream 2851243 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031958 other downstream 3608987 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031915 other downstream 4766735 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00032033 other upstream 478799 14994393 ~ 14994490 (-) True XLOC_016250
TCONS_00032037 other upstream 513052 15028646 ~ 15033121 (-) True XLOC_016251
TCONS_00032040 other upstream 586509 15102103 ~ 15107716 (-) True XLOC_016253
TCONS_00032063 other upstream 1993230 16508824 ~ 16512422 (-) True XLOC_016264
TCONS_00032069 other upstream 2100346 16615940 ~ 16616055 (-) True XLOC_016267

Expression Profile

Expression of TCONS_00033354 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.
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Expression of TCONS_00033354 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.