RNA id: TU562998



Basic Information


Item Value
RNA id TU562998
length 749
RNA type TUCP
GC content 0.54
exon number 2
gene id LOC110525714
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 30526034 ~ 30527686 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGGATCAGACTACCAGCGTTCTCCGCTTCCAAACACGTCACATTGGACATTTATCACTCACGAAAGCAGGACTGCGAGTCTGACACTGAACTGTGCAGCGAGGAGCGCCTTCTCTTGGGCAGCTTTGGCGCATCGCCCAGTGACACCAGGTCTCAATGGAACGTGTTCAATGTGACAGCTCTGCTCAAATATTGGATGCATCAGGGAGACACAGTGACGCAAAGCCAAGAAGCAAGAGTCCTTGTGATAGAGAAAGAACACGAGAGTGGGGCACCGGACGACGGAGAGGAAATTGACATGGCCTACATCGGGCATCTTACGCACAAGAAAATCAAGGTTCACCATCCGACAGACGAACGGGTTATGATGGTTGTCTTCTCCAAGCACAACCTGCCCCGAGATGGCGAGAGCGCACCCACTCTCATCCGTACTGTGGAACACTCCAAATACGCAATTTTGGACCAAGTCAGCCGCGAAGTTCAAGGGCGACGCCACAAGAGAAACCGAATGGAGAGAGTGCGGATGGCCGGCGGAATTGCAGCTAATGCTACTGGGTCCGCGGCTGAAGCCGTCCAACGCCCACTCTGTCGGAAGATTGACATGTGGGTAGATTTCGACCACATCGGCTGGAACGAGTGGATTGTGTATCCAAAACGCTACAACGCCTTCCGCTGCGAGGGCGAGTGCCCTACTCCGGTGGATGAATCCTTCAGTCCCACCAACCACGCATACATGCAAagCCTGTTGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU562964 lncRNA downstream 3305 30522006 ~ 30523381 (-) True G495505
TU562960 lncRNA downstream 8272 30501931 ~ 30518414 (-) True G495502
TU562958 lncRNA downstream 21040 30501931 ~ 30505646 (-) False G495502
TU562979 lncRNA downstream 55366 30471105 ~ 30471320 (-) True G495520
TU562977 lncRNA downstream 57506 30468974 ~ 30469180 (-) True G495518
TU562999 lncRNA upstream 728 30528274 ~ 30528571 (-) True G495540
TU563002 lncRNA upstream 3601 30531147 ~ 30531348 (-) True G495543
TU563005 lncRNA upstream 6806 30534352 ~ 30534597 (-) True G495546
TU563024 lncRNA upstream 52419 30579965 ~ 30582419 (-) True LOC110525719
TU563040 lncRNA upstream 89467 30617013 ~ 30617233 (-) True G495578
XM_036981740.1 mRNA downstream 201740 30311060 ~ 30324946 (-) True LOC118965020
XM_036979817.1 mRNA downstream 317096 30199594 ~ 30209590 (-) True sftpbb
XM_021606082.2 mRNA downstream 334871 30189572 ~ 30191815 (-) True LOC110525709
XM_036981739.1 mRNA downstream 418991 30105365 ~ 30107695 (-) False LOC110525706
XM_021606074.2 mRNA downstream 545908 29976158 ~ 29980778 (-) True LOC110525703
XM_021606093.2 mRNA upstream 9720 30537266 ~ 30553741 (-) True LOC110525715
XM_021606099.2 mRNA upstream 33875 30561421 ~ 30579113 (-) False si:ch211-102c2.8
XM_036979850.1 mRNA upstream 34072 30561618 ~ 30579045 (-) False si:ch211-102c2.8
XM_036979847.1 mRNA upstream 34072 30561618 ~ 30579112 (-) False si:ch211-102c2.8
XM_036979851.1 mRNA upstream 34072 30561618 ~ 30579112 (-) False si:ch211-102c2.8
TU561865 other downstream 851113 29675323 ~ 29675573 (-) True G494542
TU561743 other downstream 1023295 29502253 ~ 29503391 (-) True LOC110525684
TU561696 other downstream 1043340 29478655 ~ 29483346 (-) True LOC110525681
TU561692 other downstream 1111372 29411215 ~ 29415314 (-) True G494389
TU559292 other downstream 2691384 27827231 ~ 27835302 (-) False LOC110525655
TU563013 other upstream 17856 30545402 ~ 30549450 (-) True G495554
TU563022 other upstream 47572 30575118 ~ 30575573 (-) True G495560
TU564400 other upstream 1133847 31661393 ~ 31661618 (-) True G496772
TU564405 other upstream 1143432 31670978 ~ 31671927 (-) True G496777
TU564492 other upstream 1315917 31843463 ~ 31892649 (-) True G496851

Expression Profile