RNA id: XM_036979851.1


Basic Information

Item Value
RNA id XM_036979851.1
length 4679
RNA type mRNA
GC content 0.54
exon number 30
gene id si:ch211-102c2.8
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 30561421 ~ 30579113 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAACATTATACGGTTTGAACGGCTTGGCTTAGACCCGGGTGGGGGAGCACTGTTTGAAGGTTGCTTGGAAACCCAAGCAATGCTCCTGTCAATCAAGTCAAGCTGGAAATGAGTCTACGAACTTTGTTTCATACCATTCAGAAAGAAATGGCCGATGGCAGTTTTGAAGGGGCAGAAAGAGATGCTGCAGAAGACACAGATGAGCTTCTTTACACTGACCTGGATGAAGACAGCAATGCCCCTCTGCCACAGGATCACTGTGACCTCCTCCTAGATGCCATCGATGCCCAGCTGAGCCGCCTGCAGGTGCAGAGCCATAGCAATGGCATTGAAGGTATCTCCAGAAAACATGATTGCCTCAATACAGCTCATCTTAGCAGTAGCCAGTCTGTGAGCAGGGATACAGGACTGGGAAGTACCATCCCCACTAACGACACCCCCATCTCTTGTCTTGACGTGGTACGCTCTGAGACCAGGGACCTATCTTCAGTGCCTGGTCCTCCCAGCACTAGCAGTGTTCGTACAGGGGTTCTCATTGAGGCCTGTTCCAGTCTGGAGCCTGAGGGAACCAAGGAGAACAGGCACCATGCTGCTAGAACCACCACCAGACACCTGGCAGGAGTGCCTGTGTGGAATTTTGACACAGTGACCATAGACAGTGACTTGGACTCAGTACGCACAGAGAAGGTCTGGCAACACGTCCACAGCAGGCCAGGATACCTGTCAGCCATTCGGTCTGTCAGCCGCGTGGATGGTCTCGACACTGACCAGAGTGACTATGACACACCCACTCTGGAGCCAAGGAATCTCAAGTTTACTCCAGCACTGATAGCTAGCAATGGAAAAGTGACCAGTGACAGTCTACCTCTTCGTAAAGCACACAAAAGCAGAAGAGACACTCACAGGTGTGGGCTCTCtgtggatgatgatgatgaggacacAGATGAGGGCTGTGTCCGCTGGAGGAGGAGACGTAGGCCTGACAAGGACACAGGGGGACATGTGTGTACGCAGAGGCCTGGGGGTCGTCTGGAGGAGGTGAGGTCAGACTGGCTACAGATGGAGGAGGAGCTGGCTACCCTCAGACAGGACtgtgagaaggaggagaagaggctgAGGATGAAGAGAGCTCAGCTGTGTGAGACTGAACTGTCCCTCACTGACCTTCTTCAGAAAAGAAAACATGCCATGCAGGAGTGGGAGCAGCTGCGTGCGGGGGCAGAGCAGATggaaagggaggggaggagtCTGGAGGCCAGCCTGAGAGACAGCAAGGCAgaagcagacagcaccagTTCTCAGCTGTGCCGGCTGCAGAGGCAGAGGGACTCCTGTTTGCAGGAGGTCAGGGATCTGAAGGAGGAGCTGGCTGCTCTATGTAAACACAGAACTGCCTTAACGGATGGGACCTGCATGGACAGGAGAGTGACCAGTGTCAGTATGTCTGTCCTTGAGAGAGAGGAGTTGGACAGACAGCTGAACAGTGCCAAGACAGAGCTGTTTTCTGAGCAGCGGTGCTCTAGACTCAAACTGGACTCTATGCAAGAGAAGTTGGACGAAGCTCACGAGGAGCTCCAGCGtgtaacagaggaggagaagttACTGAGGGATAGGTGTGCATGTCTGGAGGAGAAACACAGActgaaacaggaggaggaggagGCAGTGGAGGTGCAGGTGTGTGAGCTACAGAAAGAGCTGGGGGAGAGTGAGAGCAGGGTGGAGAGGATAGTAGCCCAGAAGGAGCTGCAGCTGCTGGGGTtccaggaggagaggagtgccttgcaggcagagagagatgggctCCAGGGGGAGCTCCGTAGCCTGAGGAAGCTGCACAGCATCTCCCTGAGAGAGACCCAGGAGCAGGCACTCACGCAGACGCAGCGGGAGCTGGAGCAGCTGAAGAAAGAGTTGGCTTTGTCTCATGAGAAACACATCCAGCAGGCTCATATTCAAGCTGAAGAAGAGAAAACAGTATCTCTCAGAGAACAGGCCCTGTCTCACACACAGCACATTGAGTCCATACAGAGCTGCATCCAGATGAAGGAGAAGGAGTGGTGGAAGCTGAGGGAGGCTCTTAAGGAGCAGAAGGAGGTGATGAGGAGGCGAGAGGAGGAGCTGTGTGCGGAAGCTCGGGAGATGATGCACGGCACCATAGAGCGTGAGAGGAAGAAATGGGCGGCAGAGAAAGAAGCGGCTCTACAGTTGCAGTGTGGGATACTGGAGGAGCAAGGCCGGGAGGCTCTGGAGAGAATgaggggagagactgagagagagaagaggaatgcCTTGGCTCTTCAAAGCAAAGTGGTAGAACTGAGGACAaAAGTGCAGGAGTTGGAAAGTGAGGGCCTTGTGCAGCAGAGTGAGCAGGCGTCTGCTCTCGCTGCAATGCGTAGGTCCCTGAGAGAGAAGCACCAGGTTGAGCTACAGAGACTGCGCAGGCACATGGAACAGGAGGGCGAGAGGGAATCGTTGAGGCTGGAGCAGGTTGTCCAACAAGCAGAGGAGGAGGCTGGTAGACTGCAGGTGCTGCTGGGGGAGAGGGAGCACATCCACAAGCAGGCCACAGCCaggctggagcagcagcacagacaCTGGGCCCAGGAGATGGGGGCAGAGTGTCAGCATCTTCAGCACCTGCTGGAACACAGTGGGGCCGTAGGGAGCTCCCTTCAGCTCCCACACAGTCCTACGGTGGCCCAGGCAGTCCAAACCCTGCAGGTCCTCAGAGAGCAGTTGCAGCAGTCAATCAGTCAACTACAGCAGGAGCTTGACTTACAGAGACGCAGCACTCAGCAGCTGAGCCGGGACAAAGAGCGGGAGTTCCGTATTCAGAGGGAACAgatggagacggagagacagcagGCTCTGGGCTCACTGAAGGAGACACTCATTCAGGAGCACATTGAGGAGCTGAGCGATCTGCAGCAGGCCCAGGTGCGGGAGGAAGGAGACGAGACAGGAGGTTTGGCTGCGTCCCTGCGCAGGCAGCTGCAGGCCAAAGACCAGGAACTGCGCCGGGTGCAGAGGAGCATGGGACAGTGGAAGGAGCAGACCACTGCACGCCTGGCACGCAAGTTTGAGGAGGAGTTGACAGCCGAACTGGAGAGGTGCAAGGCAAAGTTGTTAAAGGGGAGAAAGGCACCTAAGGCACAAGAGGAGAAGCAGAGGAAGCTGGAGAAACTGGAAGGGGAGATGAGACGCATTACTGGGGAATGCACTGACTCTGGAGCTCAGCAAtcagcctcctctccctcactccacaTTGGGGAAGCCCCTACCTCCCCCGGGTCCTCAGACCTGGCCTCCTTCAAGCTACTGCGTCACCTCCAGAGCCGGGTCAAACAGCTCCGTGCTGAGAACCAGGCCCATGCCCATGCCTGCAGCCCCTCTCAATTGGGCAGGACCCCTCTAGGCAGGGCCCCAATGGAGCTGGCTGGTTCCTACCTGGAGACGATCACACCATCCCAGGAATGCACTCAGTTTTGGAGTCGTTCCCGTTCCAGGACAGTACAGGGTGAAGGATTGTGAGCTTTGCCAgatgacgtgtgtgtgtttgtaaaatGAATTACTGGAGGACAGCAATCTCAAATCATTTCAAGGTACTCCTGAAAAGGATGACACTACATGATCAGGGTAAATGGCCTCAAGGTCAAAATGGGTTAAGTTGGCATTCTTCTTCTGCCTTTGGAGGAATTAAGTCTTACTGCTAGGCTAAAGGTTGGGGACTGAGTGAATGTTTGATGAACCAACTGACATGTCTGCATAGTGCCTTTTCCGGAGCTGTGACTCTTTAGGCAGTGGGATCAAGCTGAAATTAGGACCATTTGAAGAAGAAAGTAATCTTGCGTCAGTTTCTTTCTATGTTGCAACAGAGCTATTGTAATTATTATGCTCAATGTACACTCACAGGACAGTTTATTGGGTGCACCTATTTAGTACAgggtcggacccccctttgcctccagaacagcctggaTTCTTTGGGGCAAGTTGGAAACGTTCCACAGgtatgttggtccatgctgaagCAATGGTGTCATGCAGTTGCTGTAGATTGAACGGCTTTACCATTGACAAcaggcaggatgggtccatggactcatgctacttatgccaaatcctgactctgccatcagcatgacgcaacaggaaccaggATTTGTTGGACTAGGTGATGCTTTCCACTTCtcagttgtccagtgttggtgatcgtgtgTCCACTGGAGAggtttcttcttgtttttagctgttaggagtggaacctggtgtggtcgtctgctgcaaaaGCCCACCTGTGAAAATGATCAACAAGTTCTgagttccgagatgccgttctgcacaccactgttgtactgcgccattatttgtctgtttgtggcccacctgttagcatgcacaattcttgccattctccttcgacctctcatcaacaatctgttttcgcccacagggcTGCCACTGACTGGTTGTTtattgtttgtcgcaccattcttggtaaaccctagacactgtcgtgcctGAATAGCCCAGGAGGgtggccgtttctgagatactggatcgtCCTGGCACGGACAATCATACCACGCTCCAAGTCGCTTATGTCACTGGTTTTTCCCCATTCTACCATTCAaatgaacagtaactgaatgccttgatgcatgtctgcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU563005 lncRNA downstream 27021 30534352 ~ 30534597 (-) True G495546
TU563002 lncRNA downstream 30270 30531147 ~ 30531348 (-) True G495543
TU562999 lncRNA downstream 33047 30528274 ~ 30528571 (-) True G495540
TU562964 lncRNA downstream 38237 30522006 ~ 30523381 (-) True G495505
TU562960 lncRNA downstream 43204 30501931 ~ 30518414 (-) True G495502
TU563024 lncRNA upstream 853 30579965 ~ 30582419 (-) True LOC110525719
TU563040 lncRNA upstream 37901 30617013 ~ 30617233 (-) True G495578
TU563043 lncRNA upstream 47368 30626480 ~ 30626694 (-) True G495581
TU563054 lncRNA upstream 115678 30694790 ~ 30695677 (-) True LOC110525722
TU563099 lncRNA upstream 127186 30706298 ~ 30917821 (-) True G495629
XM_021606093.2 mRNA downstream 7877 30537266 ~ 30553741 (-) True LOC110525715
XM_021606091.2 mRNA downstream 33932 30526034 ~ 30527686 (-) False LOC110525714
XM_036981740.1 mRNA downstream 236672 30311060 ~ 30324946 (-) True LOC118965020
XM_036979817.1 mRNA downstream 352028 30199594 ~ 30209590 (-) True sftpbb
XM_021606082.2 mRNA downstream 369803 30189572 ~ 30191815 (-) True LOC110525709
XM_036979856.1 mRNA upstream 366 30579478 ~ 30656417 (-) False LOC110525719
XM_036979857.1 mRNA upstream 366 30579478 ~ 30656418 (-) False LOC110525719
XM_036979854.1 mRNA upstream 366 30579478 ~ 30656420 (-) False LOC110525719
XM_036979855.1 mRNA upstream 366 30579478 ~ 30656421 (-) False LOC110525719
XM_021606103.2 mRNA upstream 83837 30662949 ~ 30686072 (-) True LOC110525721
TU563013 other downstream 12168 30545402 ~ 30549450 (-) True G495554
TU562998 other downstream 34072 30526686 ~ 30527546 (-) True LOC110525714
TU561865 other downstream 886045 29675323 ~ 29675573 (-) True G494542
TU561743 other downstream 1058227 29502253 ~ 29503391 (-) True LOC110525684
TU561696 other downstream 1078272 29478655 ~ 29483346 (-) True LOC110525681
TU564400 other upstream 1082281 31661393 ~ 31661618 (-) True G496772
TU564405 other upstream 1091866 31670978 ~ 31671927 (-) True G496777
TU564492 other upstream 1264351 31843463 ~ 31892649 (-) True G496851
TU565305 other upstream 2100930 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 2748395 33327507 ~ 33330504 (-) True G498484

Expression Profile