RNA id: XM_036979854.1


Basic Information

Item Value
RNA id XM_036979854.1
length 6788
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC110525719
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 30579478 ~ 30656421 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTGTTTCCAGTGTAATGTGAAAGGGACGCCTAGTgtttatctcgctctctctggtcTGGACCCTCCCCCGCACTCATCGGCGGTAGGTGTATATATGGGGAGAGCAGGATAGTGTTATTCGTTTCCGCGGTCCCTTGTTTATCCGGCTGCACACCGCAATCTGCAGCGGAGCTGAGGATGAGCGACCAGGGAAAGGGTTCGGCATCCACTCCTACAGGGGCCCTAGCGCCGGGGTCGGATACGTACAAAGGCTGGCTTTTTAAATGGACTAACTATTTGAAAGGGTATCAACGCCGATGGTTCGTCCTCAGCAATGGCCTTCTGTCGTATTACAGGACTCAGGCAGAGATGGCCCATACATGTCGTGGCACTATCAACCTGGCCACAGCCCATATCGACACGGAGGACGCCTGTAACATTGTCCTGAGCAGCGGCGGTCGCACCTACCACCTGAAGGCCAGCACTGAGGTGGAGCGCCAGAGATGGGTCACAGCGCTGGAGCTGGCCAAGGCTAAAGCCATCCGCATGATGAACGACCAGTCTGATGACTCAGGAGACGAGGAGCCCACGACCCAGTCAGACCGCAGTGAGGGGATCCAGGGCACTCTGAAGACCCTGATCAGCAAGCTTGATGACCTCGGCACGTGTAACGACCTAATCGCCAAGCATGGGGCGGCCCTGCAGCGCTCTCTGAGTGAACTCGAGGCGCTGAGAGTCCccgtggagggaggagagaaggtcaAGGGCGTCAACGAGCGAGCCACCCTCTTCCGCATCACCTCGAATGCTATGATCAATGCGTGTCGGGACTTCCTGGACCTAGCGGAGACCCACAGCAGGAGATGGCAGCGGGCGctgcagtatgagagagagcaGCGTATTCACCTGGAGGAGACCATAGAGCAGCTAGCCAAGCAGCACAACAGTCTGGAGAGAGCCTGGAGAGAGGCCCCCACACTGTCCGCCAACACGCCCAGCGCCCCCACCACAGAGAAGGtaGGGAGTGAGAGGCTGCAGAAAGGGGAGGCGAGTGATGAAGATGAGGATACAGAATACTTTGACGCCATGGAGGAGTCCCCTGCCTTTATCACAGTGACCGCCACTgagaacacacagcacagGCATTCTCAGAGTAACCTGAGTGGAGCGAGTGGAGGCCAGACCAATGACTGGAACCAGGAAAATgtgtatCCTAGCTGTAATGATTCAGGGAAGGAGCTGCAGCCCCTCAGAAGGAGGAGGAGCCACATCCCAGACAAACCCAATTACTCCCTCAACCTGTGGAGCATCATGAAGAACTGCATCGGCAAGGAGCTCTCCAAGATCCCCATGCCTGTGAACTTCAACGAGCCTCTGTCCATGCTGCAGCGGCTGACAGAGGACCTGGAGTACCATGAGCTGCTGGACAAGGCGGCGCGCTGCGAGAGCTCCCTGGAGCAGCTGTGTCTGGTGGCAGCCTTCTCTGTGTCCTCCTACTCCACCACCGTCCACCGCACGGCCAAGCCCTTCAACCCCCTGCTGGGGGAGACCTATGAGCTGGACCGACTGGAGGACTTTGGCTACCGCTCGCTGTGTGAGCagGTGAGCCATCACCCCCCAGCAGCATCTCACCATGTGATTTCTCAGCGAGGCTGGACCCTCTGGCAGGAAATCACCATAGCCAGCAAGTTTCGTGGCAAATACCTCTCCATAATGCCTCTGGgtgCCATTCACCTGCAGTTCCACTCCAGTGGGaaccattatgtttggaggaaggtAACCTCCACCGTGCACAACATCATCGTGGGCAAGCTGTGGATTGACCAGTCAGGGGACATTGAGATAGTCAACCACAGGACCAAGGAGACATGCCAGCTCAAGTTCTCCCCCTACAGCTATTTCTCCAGGGAAGTCCCACGCAAGGTGACAGGGGTGGTGTCAGACAGTGGAGGGCAGGCCCACTACATCCTGTCTGGCACGTGGGACGATAAGATCGAGAGCTCCAAGATCGTCCAGAGCAGCAAAGGGGGCAGCGGCTCCGAGGGCAAGCAGAAGACTGTctaccagaccctgtcccccAAACTACTGTGGAAGAAATACCCTCTCCCggATAACGCTGAGAACATGTACTTCTTCTCCTCGCTGGCGCTGACGTTGAATGAGCCGGAGGATGGGGTGGGGCTGACGGACAGCCGGCTGAGACCGGACCAGAGGCTGATGGAGGCGGGGAGATGGGACGAGGCCAACTCTGAGAAACAGAgactagaggagaaacagagagctgtgaggaggaggagagaggcagaggccaCAGATGCACTTGATGACGAGTGTGATTATGATGACTCTGGTCGGGAGTACGAGGGCTTCCAGCCACAGTGGTTCCACAAGAGGACGAACGCCATCACTGGAGAGACAAACTTTGTGTACAAGGGGGGATACTGGGAGGCTAAGGACAGTCAGGACTGGAATATGTGCACTGAAATCTTCTAAGCCTCGACCAGACACATCCTACCCCCTCACTGGACTCACCCAGGCCCAGGAGACTGCTCTACCGCTGGGTCTGGGTGTTGACCTCTGTGTGCAACTGTGTACGtctcacacactcacaatacAGTTTACCTCCCCACGGACACACACTTCATCTGTTTTACAGAGTCAAAGGAGAGAAGGGGCCTTCTATAGGTCCTCCCTGACAACATAGCACTGAGCTGTATGGGGGtgtaagagagaggagagattgaaTACCACAGAAAATGGACCCAATAGAGATGTCCAAAATAATCAGGTGCTCCACACACGctacccacaatgcactattCCTCTGCTCAGCACATAGCTTTATCTGGGTTTTAATGATTGAATAGCAGCCCATCTAAAtcagttctcctctcctccactgtagACTGGGATGGGATGAAGTCTATCCTCTCTAACAGACAGACCGACAAACAAAAAGAAGGCCACAGAAGTTTATAGAAAGACAGTATACTTTAAAAGGATGGACATTTATTTTGATTAGTAACTGGTATCGGAAAGTGCAGGTAGGCACAGACTCCAACGCTTGAATTAGTTTGTCATCTATGTCCGTCTGCCTGGTAAAGAACTTAAgttccctctgtttccctcctTTTCTCCATTGCAGGAGGAACCAGGTTTAGACCTGCGTATAACCATATAGAGCTCAGACCGTAACCAACGTGGTTTGACAACCAGAGTACTTTTCCAAACACAAACTGGGTATATTGTGATACCTCCCAAACACAGTCACACTTCCACTCCACTGGTAATTGAATCTTTGTCTATTGAGGTAAATAAGCACTTTTCTTTGTGGGTTTCCACAGCTTAATGCATATCCGTGTTGATGTTGAGGAGACTCCAGCCTGGGCACTGTACACTCACCCAGTCCTTTGGTGCTTAACCATAGAAACACATACACTTCTATTGTGCAGTGAGTCATTTAAAGGATATAAATGGCATTGTAGCTAGAACCTGCACACCAATTACTTGTCCCAAAAACAGATCCCATCATCCCACACATGAATATCTAGGCAGAGTGTGAATTCTACACCACCGTGTATAGTTCTACAGCCTATATGACAGATCAGAGCCTGCTCTGGACCTATAATTGTATTCCTACAGAACTGGCTGATGTTGCTATAGCGCTGAAGGAGGCCCATGGTGGCTACTGACAGCATATTGGCATCttaccacagacagacagcatgctcCTCAGGCCTCCCATAGCATACCACTGTTCAGCCAGGGAGGGCTGCTAGTGGAGACACTGGCTCCCAGGCACTGACCCAGGTTCACCTGAGCATAAACCTAGTCCTAACTCCTAGTGTTGAAGAGCTGTGGACAggctgatctgggatcagctgGTGAAGGCACTGTCAGTCTTTTGCCTTTAAGAACTGATTTGTGCACTACATATCTTAGGTGACAGGATTCTTGACAAAGTGTTAGTATATTTTGTAATTACTGTTAGGAATGTAGTATTTGGGCTGGAAGTATTGTACCTACTGTCTGGCCTTTTGTGTGAATATTTTGTGATAACAAGATAATAACAAGACAATAATATGATTATAAAACAGTTCTAATAATAATCGGAACAATAAGTCATGTTTATAGTTGAAATCTGAAGTTTTAATGAaaatgtactgttactgtacctTTTTAATTTAAATTGATCCAGCCAGTTAGAAGTTGTTTCTAACTAGCGCCCATGGTTTGGTTGCAGATTTAATGTTTTGTATTAATAGAGACTTACTCTCACACTGAAAATTATTTTTATACAAAGTTGTTGATATTGGCATATTGTTTACTTGGTTTAGATTTGCAGTTCACAAACAAGCAACCACATCTGACAGTGCCCCTGGTGTGGCCCATAAGGTTTCTGAGGTCAGTTGTTACAGAGACCTGGTATGTGCTCTGGAAGGAAGTGGAAGACACACAGAATACCATCCTCAGCCCAACATATCTGTCTGGAGGGCTAGAGGGGTTGCTGGGGGTGCATACAACTAGAAAATACTCATCAAGCTACTGCTGAATGTAATGTGAACCAGGAAAATGTGAAAGTTTAAACTGTGAGATAATAGTTATCCCCCCAATCACTTTCATGCTCCCAACTGCTTTTCATTTGAACTCAAGAGTAACCCTCCTCCACCGGAAGCCTATAATATAAAGTCTCAACGGGGCAGAGAATTAGGTTGTTACAAGCACATTCTGACCAGGCACTTACTCTCTTTAACCCCGTGAACAACAGCCTCCGTTTTCTGCACTATTTATGTTTGGTTCCAGTTGATCTACTTTGTACCCATGACCTTTCAGCAGACACACAGGCATACATTAGTCACATAACcataacacactcacacatgtaTAAGTACTGACCACATTGGCAAGAACAGTACATTATTAGTGGAAGAAATCAAGTGGGTACAGCAGGATGACATGGTTCCCCACATTGGAATGAATTCTCACTATTCTGGACCCAATCACAGTAAGGGGTTATTGTAAATGTGTCATTGTATAGACAATACTACAACGTCATGTACAGTATTACTGGGCGAGAAACAGTATTGAAATGTGGGGAAGAAAGAGTATGATGTGCAGGGCAAGTATAACTTTTTTCTCAATCATCAACTCCTTATAGATTTAGTTTACTATATTGGGTTTGAAATAGAATTAGTTTTATATATGAATATACATATATTATATTTTGAATGATGATAAACACATCATACATTTTAATCGTTTATTTTGAATATCCAAATGATGTGACCTCAAAGATGGGTGGGTGTGGGTTGCTAGGCGCCCCAGCCAGGGCCTGTGTAAGAGACTGATTAGTAGCAATAGTGGTGATGTTTAGATGATTTATTCATTCATGACACTTGTTGGGGTAAAGAAGATGTTCATCTCTGCTCTGTGCAGAAAGGAAAAACTGAACAACCAAAGCATCTGTGCAGTGTACTGTAGCCTAAAATACTCTTTACCTGCCTTCCTAATGTCATCATCTTTTTCATTTTACCCACACTTAATTCAGTATGGTTTGATTTACCCAACAACACTTTTTCAatatttttattttctcatttgaacctttatttaactaggcaagacagttaagaacaaattcttatttaccatgacggcctacactggccaaacccagacgacactgggccaaatgtgcaccgccctatgggactcccaatcacagcctggaatcaaaccagggtgtctgtagtgacgcctcttgcactgagatgcagtgccttagaccactgcgccactcaggagccaaaATCCAGTATGGTTTGATTTACCCAACAACACTCAAACCAGTATGGTTTGATTTACCCAACAACACTTAATCCAGTATGGTTTGATTTACCCAACAACACTTAATCCAGTATGGTTTGATTTACCCAACAACACTTAATCCAGTATGGTTTGATTTACCCAACAACACTTAATCCAGTATGGTTTGATTTACCCAACAACACTTAATCCAGTATAGTTTGATTTACCCAACAACACTTAATCCAGTATGGTTTGATTTACCCAACAACACTTAATCCAGTATGGTTTGATTTACCCAACAACACTTAATCCAGTATGGTTTGATTTACCCAACAACACTTAATCCAGTATGGTTTGATTTACCCAACAACACTTAATCCAGTATGGTTTGATTTACCCAACAACACTTAATCCAGTATGGTTTGATTTACCCAACAACACTTAATCCAGTATGGTTTGATTTAGCTTTAATATCTATGctttgtttttcttttctttttttctcatcATGGGTGCCATTGTCTTtcatttacatactgtatttgtATATGCACAATAAGAAGTGTGTGTATCACAGATATACATGTGTCTTTTGTTTTGTTCTGCTCTGAGGCAGGACTTTAGTAATGAAGACCTGGTCATACCTGGTCTGAATTAAACCCTGCTGCACAGTGGACTCTGTGCTGTTTGGACTCGTTCTAATACAGTAAGAGCCTGTGTGACCCGTATCACTACTAAGGACCTGGTACTgaaggagtgggtggaaggacgGAGGTGAGCAGGGTCTGGCCTTACCATACTCACTTCAACCTCACTCACACACGCTCATATTCCACACACACTATCTCACACATATGCATCTCTGTTCAGGTGTAACTGCAACCGGGGTTGGTCTTTTATAATTGTGTTTTTTCTCTCTTAATTTATACACATGTAACATTGTCTTCAAAAGAAAGACACAATGACAAACATGAGATAATAAAAGTGTTTCTGTTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU563005 lncRNA downstream 44881 30534352 ~ 30534597 (-) True G495546
TU563002 lncRNA downstream 48130 30531147 ~ 30531348 (-) True G495543
TU562999 lncRNA downstream 50907 30528274 ~ 30528571 (-) True G495540
TU562964 lncRNA downstream 56097 30522006 ~ 30523381 (-) True G495505
TU562960 lncRNA downstream 61064 30501931 ~ 30518414 (-) True G495502
TU563054 lncRNA upstream 38370 30694790 ~ 30695677 (-) True LOC110525722
TU563099 lncRNA upstream 49878 30706298 ~ 30917821 (-) True G495629
TU563158 lncRNA upstream 174961 30831381 ~ 30832545 (-) True LOC110525725
TU563210 lncRNA upstream 263153 30919573 ~ 30919905 (-) True G495735
TU563211 lncRNA upstream 270593 30927013 ~ 30927265 (-) True G495736
XM_036979846.1 mRNA downstream 365 30561618 ~ 30579113 (-) False si:ch211-102c2.8
XM_036979848.1 mRNA downstream 365 30561618 ~ 30579113 (-) False si:ch211-102c2.8
XM_036979849.1 mRNA downstream 365 30561618 ~ 30579113 (-) True si:ch211-102c2.8
XM_036979847.1 mRNA downstream 366 30561618 ~ 30579112 (-) False si:ch211-102c2.8
XM_021606103.2 mRNA upstream 6529 30662949 ~ 30686072 (-) True LOC110525721
XM_021606104.2 mRNA upstream 38365 30694785 ~ 30748526 (-) False LOC110525722
XM_021606105.2 mRNA upstream 38365 30694785 ~ 30748526 (-) False LOC110525722
XM_036979859.1 mRNA upstream 38365 30694785 ~ 30748527 (-) False LOC110525722
XM_036979860.1 mRNA upstream 38365 30694785 ~ 30748758 (-) False LOC110525722
TU563022 other downstream 3905 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 30028 30545402 ~ 30549450 (-) True G495554
TU562998 other downstream 51932 30526686 ~ 30527546 (-) True LOC110525714
TU561865 other downstream 903905 29675323 ~ 29675573 (-) True G494542
TU561743 other downstream 1076087 29502253 ~ 29503391 (-) True LOC110525684
TU564400 other upstream 1004973 31661393 ~ 31661618 (-) True G496772
TU564405 other upstream 1014558 31670978 ~ 31671927 (-) True G496777
TU564492 other upstream 1187043 31843463 ~ 31892649 (-) True G496851
TU565305 other upstream 2023622 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 2671087 33327507 ~ 33330504 (-) True G498484

Expression Profile