RNA id: XR_005052059.1



Basic Information


Item Value
RNA id XR_005052059.1
length 2111
RNA type mRNA
GC content 0.54
exon number 18
gene id LOC110525725
representative False

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 30831347 ~ 30905811 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TgatttaggattaggattaggaatATGACATAAATCACTCCGGGATAGTTCAGTGTTGATAATGACGATAGACGCTTAAAGGGAATCTGTTTTTAAACGTGCCTTGTTTCCGGTGAAATGTTGAAATAGAGAATGGGCAGGGTAAAAGACTGCGGGCTGTGCTTTTAAAAGACTGAAGGAGACTAATTTATTTCCATTGTGAGAAACTCGACTTGAGATAGGCTACAGTACGctcagacggagggagggagtgcTGATAGTGAAAAGAAAAGAGACCGGCCAGTCACATTAGCCTACCTATTTTGGCTGGTTGCTTCGGAACACTGCCTATAGATTAGGGCATGTGGGGAACTTTCTGCAAAGTCGGTGAATGTTTGAATATTTTTGTTTTCGGCCTGTCATTTTTACCTTTCTTTCCGTGATATTTAAAATGCAGCCACGTCCTTTCTTGCTATTATAACGGTAAAGGTGTAGTTGATATTTGTATTTTATGTATTTGGTTGATGAAGGGATGCGCTCTCTCTCCGTGAAGCGAAAACCTGGACTTTTAGGTATATTTTTTTCTCGAACTGGAAAGAAATCTACTCACTAGCTCACCTTTTTAGGAACTCTTCAGCCTGTGCTTTTTTGACGCCGCGGAAATGGGAGCGTGTCAACCGGACTGCGTGTCCGCGCTTTCCCGAAAAAGTTTCAGTTGGATTGTGCTGCTGCTGTGGCTGACCTCTGCAGCGCACGGAACCTGGAGGACGGGTCTTTACAAATATTCAACTGGGACACAGCTCAACAGAGAGTCTTCCGCAGCGTCTCAAACCTCTATTTATCAAAAAAGGAACTGGTGTCCCCATACGGTCACTAAGACAGTGACGTGCCAGGTGCAGAATGGGACAACCATGCAGCGTGTCTACCAGACATGTCGCTGGCCACAGGGATGCACAGGGGGCAGCTACCGGACAGTGGTCAGACCCTCCTATAAGGTGGTGTACCGTGCCGTCACCTCTCTGGAGTGGAAGTGCTGTCCAGGCTACAGCGGCACCGCATGTGAAGAAGAGTCAGGAAACCAGCTGGTGGCTCAGGAGGCGGTGAGGAAGCCGTCTACTCTCCGCCGGCCACCTGCCCAGGCCCGCACAGGAACAGGGGAGCAGCTCTCCACCAATTGCCTCAACTGTAGTCGAATCACAGCCCTGACAGACAGACTCAGCTCACTGGAGGCAAAGGTCCAGGTGCTGTCCTCTCCCGCTTCCACTTCTCACCGCCACCTACAGGGTAAAGGAGGATTGGCACGGGAATCTTCCTCACAGATGGTGGATCCACAAACCAAAGGAGCCCCTGGCGAGCAGGGACCCATAGGTCCACAGGGTGAAAGAGGCAGAGACGGTACCCCTGGACGAGATGGGAAGCCAGGGTCTCAGGGACTGCCGGGACCCAGGGGCGAAGCTGGGGTGAGGGGCCCCTCGGGGACCCCAGGATCTAAGGGGACCCCAGGACCAGTGGGACCCAAAGGTCTACCAGGTCTCCCAGGAGAGAGGGGTCTACTTGGGCTTCCTGGACCTCCAGGACCCCCTGGACCCCCAGCCACTACCAGTGCCCACATCCCAGAGCCAGACCAGGGTCAGGGCAAGCTGCTCCTCTCCAACACCTTCCCTGACCCACGAGGGGCTCCTGTCCAGGGCCCCCAAGGCCCTGATGGACCTGCTGGTCCCCCAGGCCCCAAAGGCCCCATGGGACCCCCTGGCCCAGCAGGACAGAACGGGAAGTCGGGGGCCCCTGGGAGACACGGCCCAGTGGGGCCAAAAGGAGAAcgtggggagagaGGTCCTCTGGGatatccaggagagagaggattCATAGGAGATCCGGGAGTACCAGGAGCCAAGGGAGAACCAGGAGAGAAAGGCCTGCCGAACAATCTAAATGGGGACGGGATACATCAGATCAGAGAAGCGCTGAAGATCTTAGCCGAGAGGGTTTTAATCCTCGAGACTATGATCGGTATTCATGGACATTAGTTTGAAGATGTTCCAAGACTTGCAGGCAGACCTGGAGCTTCTGGCTCGCAGGGTGACACTGCTGGAGGCTATCATCTGGCCAGAGCCTGATCTAGGGTCTGGAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU563158 lncRNA downstream 558 30831381 ~ 30832545 (-) True LOC110525725
TU563054 lncRNA downstream 137426 30694790 ~ 30695677 (-) True LOC110525722
TU563043 lncRNA downstream 206409 30626480 ~ 30626694 (-) True G495581
TU563040 lncRNA downstream 215870 30617013 ~ 30617233 (-) True G495578
TU563024 lncRNA downstream 250684 30579965 ~ 30582419 (-) True LOC110525719
TU563210 lncRNA upstream 21278 30919573 ~ 30919905 (-) True G495735
TU563211 lncRNA upstream 28718 30927013 ~ 30927265 (-) True G495736
TU563208 lncRNA upstream 68083 30966378 ~ 30967417 (-) True LOC110525727
TU563248 lncRNA upstream 109846 31008141 ~ 31009233 (-) True G495772
TU563302 lncRNA upstream 198209 31096504 ~ 31096728 (-) True G495822
XM_021606113.2 mRNA downstream 12484 30802629 ~ 30820619 (-) False LOC110525724
XM_021606117.2 mRNA downstream 12484 30802629 ~ 30820619 (-) True LOC110525724
XM_021606114.2 mRNA downstream 12485 30802629 ~ 30820618 (-) False LOC110525724
XM_021606111.2 mRNA downstream 12487 30802629 ~ 30820616 (-) False LOC110525724
XM_021606112.2 mRNA downstream 12488 30802629 ~ 30820615 (-) False LOC110525724
XM_036979869.1 mRNA upstream 7702 30905997 ~ 30966075 (-) True dnah10
XM_021606124.2 mRNA upstream 67860 30966155 ~ 30979576 (-) False LOC110525727
XM_021606123.2 mRNA upstream 67860 30966155 ~ 31000403 (-) False LOC110525727
XM_036979875.1 mRNA upstream 160243 31058538 ~ 31095890 (-) True LOC110525730
LOC110525732 mRNA upstream 407312 31305607 ~ 31306398 (-) True LOC110525732
TU563022 other downstream 257530 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 283653 30545402 ~ 30549450 (-) True G495554
TU562998 other downstream 305557 30526686 ~ 30527546 (-) True LOC110525714
TU561865 other downstream 1157530 29675323 ~ 29675573 (-) True G494542
TU561743 other downstream 1329712 29502253 ~ 29503391 (-) True LOC110525684
TU564400 other upstream 763098 31661393 ~ 31661618 (-) True G496772
TU564405 other upstream 772683 31670978 ~ 31671927 (-) True G496777
TU564492 other upstream 945168 31843463 ~ 31892649 (-) True G496851
TU565305 other upstream 1781747 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 2429212 33327507 ~ 33330504 (-) True G498484

Expression Profile