RNA id: XM_036979877.1


Basic Information

Item Value
RNA id XM_036979877.1
length 3956
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC110525733
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31215076 ~ 31305586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctctctctctctctctctctctctcattctctttttctctcttcctgtctttctctccctctgttctttcTCTGTGAAGTGGTAACCCCCACAGGACCACGGCAGAGCGCTAGCTGAAAGTAATTAGTGCTTTCAAAGTGACACTGCTCCACTTCATCCACAACTCCTATGTGCCACAGTACTCCACCACCCCCACCGCCACCTCATCACACTCCAGGCCCCTGTCATGTTCTCGTCAAGAGCAGCCACACCCAACCCGCTCCCCACCATTCACACAAGGCGAAGTACATCGGCTGCTATATCGACGACACAGCAAAAAGAGCACTTAGGGGAGTGTCCTTTTTCGACTACAAGAAAATGACGGTCTTCCGTTGCCAGGACAACTGTGCTGAAAGGGGATACCTGTATTCAGGCCTAGAGTTTGGGGCGGAGTGCTACTGTGGCCACAAGATCCAGGCCCCCAATGCCTCTGAGAGTGAATGCATCATGCAGTGTAAGGGCGACAAGGGCAACCTGTGTGGAGGGGCCAATCGCCTGTCCATCTACAGACTGGAGCTGAGCCAGGAGTCAGCGCGCCACTATGGGAGTGCCATCTTTAAGGGGTGCTTCCACAGGCCTGACAACGTCACCCTGGCCCTGCCCATCAGCGCTGTCATCCAGAACATGTCAGTGGAGAAGTGTGTGGACATGTGTACGGAGAAGGAGCTGTCCCTAGCGGTCCTAGCTGGAGACAGGTGTCTCTGTGGGTTCCCCACCCCCCACTTCTCCCTCCATGAGATGGAGGATGAGGACCTGTGCCTGCACCGCTGCCATGGCGAGGAGTTTGAGAGCTGTGGGAATGACGAGTACTTTGTGGTGTACCAGACACAGGTCCAAGATAACCGCTGCATGGACCGGCGCTTCCTGCCCACGCGTTCCAAGCAGCTGATTGCTCTGGCCAGCTTCCCCGGGGCTGGCAACACCTGGGCCCGCCACCTCATAGAGCTGGCCACCGGCTTCTACACAGGCAGCTACTACTTTGATGGCTCCCTCTACAACAAAGGCTTCAAAGGTGAGCGAGACCATTGGCGGAGTGGTAGGACCATCTGCATTAAAACACATGAGAGTGGCAAGAAGGAGATTGAAGCCTTTGACGCCAGCATCGTCATGATCCGCAACCCTTACAAAGCCCTCATGGCTGAGTTCAACCGCAAGTACGGCGGCCATATTGGATTCGCCTCTCAGGCCCACTGGAGAGGGAAAGAGTGGCCTGAGTTTGTGAAGAACTATGCTCCTTGGTGGGCGTCCCACACACTGGATTGGCTGCGTTATGGGAGGAATGTCCATGTGGTCCACTTTGAGGAGCTGAAGAGGGAGCTGTTCTCTAAGCTCAAGGACATGGTCCTGTTTCTGGACCTGGAGGTGGCCgaggaacgcctactctgtgtaGAGGGACAGAAGGACGGTAAATTCAAGCGCTCCGGCCTGCGTAAACTGGATTATGACCCGTACACACCTGAGATGCGCACTAGCATTGACGAACTGGTCATGACTGTGGACGCTTCCCTAAAGAAGAGGAACATGGCCGGGGTGCCGAAGGAGTACCGACCCACTCTGAGATAatatctcctctcctttccctctctctctctctccatttctcactCTGTTCTTCTATCCCTTCCCTTCGTTCTAGGATTAATTCATGCCATCCATGTCCAAATGGCTTCAAATATAAAAGTCACATGAACTGAAAATCTATGTGTAGGAAATACGTTTTTATTTAATATACTTCTCTGTTCCCCACcacttctctgtctccttctttcTCACATCCCTTTCCTTTATTTGTTTGACTGACAGGCACACAACCGTATTGATTAGGAGAACAAATACTCTTTCATGAAATGGTTTGAAATGTCACAAAACCTTTTAATGATCTGTCATTTTCaactaaatgttttgttttgttagataTGAAAAATCTATACCTCAACTTGCTGAATACAGTATGTTTGAGAGCCACTATATTTAAAATTAGGAGGTGGTCAAAACCGTACTATTGGACTTGGATTTGGTTGGCGAAAACCCCTGTGTCCATCTATAGGAGGTAATGAATGGGACTGAACACTCATCTCTCCGTCTACCCCTGTGGACACACCATGAGGCTAGATCTTCACTCTTCTCCTCATACTTCAGCAGTATTCTAACAAGAAGAGGTAATACAGCACTATCAAACAGCTGCTCTGCTTCTCTGAAGCAGTGGCCTCTCTTAAAACTGTGCTGCATCAGTCCTACTGAGTCATTACATCTGTGCATTACAGCTgtccttttggttactggcaacagctctggaacACTAAATAATTAACTCTACATAGTTTATTTTGACCATCAGGCTCTATGGAACACTCCTGACTCTTGTCAAGACAGCCCTTTCAATAACTAGCCTCGACTCATCGACAGCTTGTTCGTCCTTGGTCTCCTCAGATGTGGTCAGCCAGACACACTGCGCATGATACATttattgtggatttattgaaTGGAGTTTTCTGCAAACAGCGCTATTTTGAAACTACCACTTCTGCTAAATCACTCTGCAGAACTTGTTGCTTTCCTTATAATGGTGGTTTGAAGCAAAATTACAATGTGGTGCCTTTTCTGTCAGCTAACTGTTGGCTTTAAGTTGAAATGTAGGGAAAATAAAATGATTACTAATATCAAATATTATTGGTAATGTGAATACATTATTGATGATATTTGATGTTAAACTGTCCGCTTAATGCATCATCAGACACACTAGTGTCGAGCTTATGAAACAAAATACCAAGGATGTTGTTATGCAATTATTGCAAATATTGTGTCAGTGCAATGCACTGATCGAATGTTTGAGATTTCCATTTGGCTCATAACTTAATACAGGCTGGGAAGAGGCAGGGTTAACAATCAATAATTGTATGCCACCTCACTGTGTGGCTGAGGCACGTTAGATCAGTATTGTGGAGTTATCAAGCATACCCTGATAGTTTAACACTTCAAATTATACATTTGTATGGGGGGGCAGTCAAATTTGCCTGCCTATAATGACTCAAACACACCAAAATCAATCAAAATGAACATTGTGTCTCTGTTTGAGTGACTTCATAACTAAGAGATAATCATATTTGTCTTCATAATAAGATAATAATATTTGTCTTCATAATAAGATAATATTTGTCTTCATTTATTTAACTTGAATATGATCCAAAAagtgtttcactgtaaggttaaTACAGCTGTAGCATGTACTGTAGCTGCACGCTTACTACCCCAAAGGCCCAAAAGGCATTTATTCAAGTTATAGATGATATGAGATGAGAGTTTTCCCCTCAATGCTTTTTTTTCTTGATATACGATCCCTGATCATTTTTGTTGAAGGTGAGTAGTAATGCTGAAAGTGACGCACCCCATTTTCTCGATTGCTTTGGTATCGCAAAACAAGCTACATGTACAGGTATATAATAGTCCCAGCCATAGGTAATGTGCAACAGAGAATAGAAAGCTAATATACATCAAAATAATCTGTAAGTGAAGCATTTGATTTTGTACACCCACCATTTTATGTTGACTGATGTATAATGTGTGCGTGTCTCTATTGGTCACATGTAGAAAGAGTGCAATGAAAGAAAAAATTCCTTCCAAAATATACACATATATTTTTTATAGTACGTGCAACAAAATTACAAATATATTTATAATGCAACAAGTAAATGGGAGATATCTCTTCTATTTTTGACATAGGACTTTaactttgagtgttttttgcTTTCATTGACAGGCTAGCACTATCTCAAAAGGGGTGTCACAGTTGAATGTATTTTGTATGGAATGAATGTAATGTGATTATAAATAAGGTAATAGAATGGAAGTAAAAGACTGCGATTCCAAATAAACATGCAATCTGAAATAAATGTTGTATGGTAGTAAAAATA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU563431 lncRNA upstream 16586 31252863 ~ 31259303 (+) False G495942
TU563430 lncRNA upstream 16586 31255194 ~ 31259303 (+) False G495942
TU563429 lncRNA upstream 16586 31258970 ~ 31259303 (+) True G495942
TU563416 lncRNA upstream 39532 31228552 ~ 31236357 (+) True G495930
TU563415 lncRNA upstream 39836 31228274 ~ 31236053 (+) True G495929
TU563465 lncRNA downstream 14858 31320444 ~ 31321010 (+) True G495976
TU563467 lncRNA downstream 16345 31321931 ~ 31322161 (+) True G495978
TU563470 lncRNA downstream 20748 31326334 ~ 31326753 (+) True G495981
TU563491 lncRNA downstream 32632 31338218 ~ 31342976 (+) True G495995
TU563530 lncRNA downstream 95094 31400680 ~ 31409129 (+) True G496024
XM_021606130.2 mRNA upstream 125702 31099067 ~ 31150187 (+) True LOC110525731
XM_021606127.2 mRNA upstream 237961 31025781 ~ 31037928 (+) True LOC110525729
XM_036979870.1 mRNA upstream 253365 31007311 ~ 31022524 (+) False si:ch211-225b11.4
LOC110525738 mRNA downstream 101418 31407004 ~ 31428582 (+) True LOC110525738
XM_021606152.2 mRNA downstream 339117 31644703 ~ 31654452 (+) False LOC110525744
XM_021606153.2 mRNA downstream 339194 31644780 ~ 31654452 (+) True LOC110525744
XR_005052062.1 mRNA downstream 350752 31656338 ~ 31660186 (+) True LOC110525750
LOC110526885 mRNA downstream 354647 31660233 ~ 31671615 (+) False LOC110526885
TU562768 other upstream 265285 31008539 ~ 31010604 (+) False si:ch211-225b11.4
TU562769 other upstream 265285 31009616 ~ 31010604 (+) True si:ch211-225b11.4
TU562537 other upstream 542999 30732352 ~ 30732890 (+) True G495132
TU562464 other upstream 699133 30576105 ~ 30576756 (+) True G495076
TU562307 other upstream 752946 30517976 ~ 30522943 (+) True 4ebp2
TU565098 other downstream 1622332 32927918 ~ 32928851 (+) True polk
TU565537 other downstream 1840881 33146467 ~ 33149998 (+) False LOC110525799
TU565528 other downstream 1849105 33154691 ~ 33164261 (+) True LOC110525799
TU565692 other downstream 2012051 33317637 ~ 33320348 (+) True c6h22orf39
TU565715 other downstream 2156049 33461635 ~ 33465055 (+) True LOC110525816

Expression Profile