RNA id: XM_021606139.2


Basic Information

Item Value
RNA id XM_021606139.2
length 3229
RNA type mRNA
GC content 0.44
exon number 2
gene id tmem119a
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31458042 ~ 31464600 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACGGGGACAACCTCACTCTCAACAGCTCCATCCCAGACCTTGACAGAGGCTTGTAACACTAGTCAAACTCACAATATATACCACACTAGAGCTTTGAGTCTGTCAACTACATAGCAAATGTTTTGTTCTCATACAGAAAAAGCATTAACTTTCAGCATTACTCTTGAGAAATACAAATCTATCACTATGGCCAAGCAAGTGTACACCTGACCTTCCCTGTACTTACTGAACAAAACCTTCAGAAAATAAATCAATAGGGGGAGAAAAAAATATCTGTTGAACTGAGTTGTTCAACCTATGATTTAAAATCTTCTTATGGCAAGGCTGGACCACGAGGTGCTCCAAACAGGCGTGGGCAGAACAAAAGCCCTGCAGCGCCAGCAGGGATGTGAGAACTGAGGTATGTGTTTATAGCAGACCATAAAATTTATATGTTAGATTTGTATGTGTGATATGATGAAAGACGGGCCCTGTGCCTGTGAGCTGGTCCTGTAGGCCGTGTGGAGACGGGCTGTAATCTGGAGCACGTAATTAGAGGATTCCGTGGGAGGCAGAGAAACCTAGGGACTCGCCCTGTGGAGAACTAAAATACCCACTAACCTTCAAAATGTACAAAGAATAAGTGTTATTTTCCATTTTAGAGAATACTGATTCAACTACGAGTGAAGGTAAGGTGTTTTATTTTCATCTTTGATAATAAAGTCCCTCACATATTGCACTGCACTAACATCTACAACACCAGAGCAGAATTTTGTATTTGACCTCATTGCGCAACTTTCAAGATTGCCACATGAACCAGTGAATCAGGGATTGTGAATAATTAGAAGAATATATTAGTAGTGGACAAAGATGTCCCAGTCCCCCTCATCAATATCTCCCATCATATGTAATGTTTAGGAGCAGGCAAGGAAAATATATTCAGTATGGCAGCCCCTAACTGTCCCCCCTCTCTAGACTGACCAAAGCATCCACCAAAGTATGTGAGCATCCACCAATGTCCCTCTGCAAGGAGAGGAGGATTTGGGGGAGGTAGCAGGAGAAGATGGAAATGTAGAGGGATGGACATCTTTCTGCAATCAGCAGGCTTTGTTTTTTTACAATTGGAGAAATAACTTTCAGTATACTTCAAGTTATAGGAGAAGGGTGGAAACTTGgaagctctctctttctccctcaatttccttctctgctctctctctctctctctcttgcactccctctccccttctctgctGTTAGAATCCCAGTACCATTCAGTCCAGAGGAGACACCAGCCAGACATACAATCTGATTCTGAAGGAAAGATGAGGCACCACTTGATTCTTCACCTGTCATGCGTGAGTCTGGTTATGCTCTGGGGCCATGGCTGTGCCAGGCATGTGCCAATGGTCTACAGCATTTCCATGGATGGCAGTGGTGACGTAGGGGAGACGGATCTTATATTCCCCGTTGATAGCCCCCACCACCCTGTCTCCCCCACCGTCGATGTGTCCCCCACCGTCGATGTCAGCCCCGTTgatgtctcccctgtctcccccaccACTACCCTAGCCCCCACCCTGGTCAGCACCatcaccaacaccatcaccaccaccatgatCCGCCTTAAGGACTTTATGGTCACCCGGGTGGTGGACTTCCTCCAGGATAATATGCTGATCATCATCGTGGTCACCTCCCTCCTCATTGTCATGATCTTCATCATCTGCTGTGCCGCTACCATGAGCCAAAAGCGCAAgttggaggcctacaaacctcctGCCAACTCACCCAGCAAGTATATGGACCACACGGCAGAAGGAGTCAAATCCTCCAGTGAGGTCCAGAGTAGGGTGTGCGGCGGGCCTGACTCAGCCAGGAGGGTCCAGATCCAGGGAACCCCCAAGAATCTACGCACCCCTTCTGTTGCGCTGGTGGGGGAAAAGGTGGGCAAGGAGCCCAAACCGAAGGAGGTCCAGAAAGTGAACGatgtagaggagaaggagacgcGGAGGGTGGAGCCTAAGCACAAAGGGCAGAAGGCTGAGGAggtgcagcaatgttccagctcCAGCACCAGCCAGCCTATGGTCTGCACCTGCCACCTGAGGAAGGCCAACCACTAAGTATAGGTTGGGGCTCCAACCATGTAAACTAGCAAAAAAAAGGAGACAGAAACCTTTTCTTGTGCGGAGGGAACTCCCTGGGTACGTCCGCTGCTGTGTGCCAAACTTGTATGTGGAATCTGACCTTGTGGATACCTTTTAGCATACAGATACTGTACAATTAGGTCTAAAGAGCATACAATCAGGCCTTAAAAACATAAGGAATTTCAGCCCTGACTGTCCTTTTTGATATATCTGATAAATTATTCCTCCTATACTTACCTTGTTGTAGAAAAGTCATTGTGAAATATGAGATTTTGTTCATCAATTGATAGCTTTCAAAGCGACATGTCAAAACATATACCAAGACCGTGCTTATAGGATGTTTGCATGTTATTACTGTTGGGAAATTGTGCTGCTCAGTTAAGCTTAACTAAAAAGATGTAGATCacacagaaaaaaagaaagtTATCTTCTGTGAACGAGAGAAAGCCAAGCGTATTTCTGTTTGCTAACTCTATGGCGATAACCTGGCCAGTTGATTTCAACACAGTAAATGATTGATGTgagaaaatgtattttcttttaGCAATGGACTCCTTTTTTTCTCTTACTTCATTAGAAATGTTACAATTATATACATGTCACATGGGTGCTTTGTGGATTAATATTGAAGAGAATTTGCTCATGCTATATGGATAGACGGTAGAGCTGCTTTTTTTGTATTACATTATCTATTTTTTTCCGAACATCAAAATAACTGTGATTTGCAGGTGCGGGTATGTGGTTACAAAGGTCAGTGCAAGTTTTTATTAAAAATGGACTTACATTACTCAAGTAAATTAAAATCCCCAAATTCTCCTGAGTCCCTTTAAGGATTGTTTTACAGTGACCCTCAGTTCTGCTGTACATTATGGTAATTTTGTTTGCGTAATGGATCTTATTTAATTTTTGTCCAGCTTCAATAGAGATTTTGTTGATATATGTTTTTCTGGAAATTGTAAGTGTAAAAGACAGGCAGTGAGTGTGAGATTTCACCATGTTCATTAAGTGTTTcaaaaacatacacagaacaaaaatctaaacgcaacctctaaagtgttggtcccatgtttcatgagctgaaataaaaaaatccctgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564262 lncRNA downstream 32876 31424921 ~ 31425166 (-) True G496652
TU564260 lncRNA downstream 34136 31423689 ~ 31423906 (-) True G496650
TU564245 lncRNA downstream 48927 31400719 ~ 31409115 (-) False G496640
TU564240 lncRNA downstream 48927 31407921 ~ 31409115 (-) True G496640
TU564244 lncRNA downstream 54557 31400719 ~ 31403485 (-) False G496640
TU564399 lncRNA upstream 194880 31659480 ~ 31659947 (-) True G496771
TU564403 lncRNA upstream 203433 31668033 ~ 31668357 (-) True G496775
TU564404 lncRNA upstream 204654 31669254 ~ 31669636 (-) True G496776
TU564417 lncRNA upstream 240064 31704664 ~ 31705045 (-) True G496789
TU564429 lncRNA upstream 294547 31759147 ~ 31759455 (-) True G496801
XM_021606135.2 mRNA downstream 12672 31428660 ~ 31445370 (-) False LOC110525736
XM_021606136.2 mRNA downstream 12672 31428660 ~ 31445370 (-) True LOC110525736
XM_021606137.2 mRNA downstream 12817 31428660 ~ 31445225 (-) False LOC110525736
XM_021606132.2 mRNA downstream 137880 31315214 ~ 31320162 (-) True LOC110525734
XM_021606133.2 mRNA downstream 142979 31310900 ~ 31315063 (-) True LOC110525735
XM_036979880.1 mRNA upstream 1233 31465833 ~ 31518984 (-) False LOC110525740
XM_021606142.2 mRNA upstream 1233 31465833 ~ 31518987 (-) False LOC110525740
XM_021606140.2 mRNA upstream 1233 31465833 ~ 31539790 (-) True LOC110525740
XM_036979881.1 mRNA upstream 80543 31545143 ~ 31607759 (-) False ssh1a
XM_036979882.1 mRNA upstream 80543 31545143 ~ 31607759 (-) True ssh1a
TU563022 other downstream 882469 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 908592 30545402 ~ 30549450 (-) True G495554
TU562998 other downstream 930496 30526686 ~ 30527546 (-) True LOC110525714
TU561865 other downstream 1782469 29675323 ~ 29675573 (-) True G494542
TU561743 other downstream 1954651 29502253 ~ 29503391 (-) True LOC110525684
TU564400 other upstream 196793 31661393 ~ 31661618 (-) True G496772
TU564405 other upstream 206378 31670978 ~ 31671927 (-) True G496777
TU564492 other upstream 378863 31843463 ~ 31892649 (-) True G496851
TU565305 other upstream 1215442 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 1862907 33327507 ~ 33330504 (-) True G498484

Expression Profile