RNA id: XM_036979880.1


Basic Information

Item Value
RNA id XM_036979880.1
length 4473
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110525740
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31465833 ~ 31539790 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATAGGGGGCGGGCGGTGTATCCGGTGCAGCAGTGACAGGGGAAAAGAGAGCACTAGGCGAGTTGTCAGCGGCTTCAGCTGGATAAACGTCGGGAGTCCTATTTAAGATAATTCAACAGTcagggatattttttttttactttgatcTGGAAGCCTCCATGCGGAATGAATGGCCAGTCCAGCAGCCAGTTGGGGTGGGGTATATTAGCCACGACAACGTCATCGTATCTGATGAACCAAACTAACCGGCGGTTCCACTAAAAAGAAGAGGATGAAGACGATATGTTCAGGCGAGTTGTACGAGCGAGCAAATTCCGTCATGTCTTCGGCCAGGCGCTGAAGAATGACCAGTGCTACGACGACATCAGAGTGTCGAGGGTCACATGGGACAGCTCGTTCTGCGCCGTCAACCCCAAGTTTGTCGCTATCATCATAGAGGCCAGCGGAGGCGGGGCCTTCCTGGTCCTCCCTCTTCACAAGTCGGGCCGCATTGACAAGGCCTACCCCACAGTGTGTGGTCACACGGGCCCTGTACTGGACATCGACTGGTGCCCCCACAATGACCAGGTCATCGCCAGCGGCTCGGAGGACTGCACGGTCATGGTGTGGCAGATCCCTGAGAACGGGCTGGTTACCGGCTTGTCTGAGCCTGTGGTGGTCCTGGAGGGACACTCCAAAAGGGTTGGCATCATCACATGGCACCCCACGGCACGCAACGTCCTGCTCAGTGCGGGCTGTGACAACCTGGTCATCATCTGGAACGTGGGGACGGGCGAGGCCATGATCCAGTTGGAGGACATGCACCCTGACGTCATCTTCAGCGCCTGCTGGAACCGCAACGGCAGCCTCATCTGCACCGCCTGCAAGGACAAGACCATCCGCGTCATCGACCCCCGCAAGGAAGAGATTGTAGGGgagaaggagaaggcaCACGAGGGGGCGCGGCCCATGAGGGCCATCTTCCTGTCGGACGGGAACGTGTTCACCACAGGCTTCAGCCGTATGAGTGAGAGACAGCTAGCCCTGTGGAACCCGCAAGCCATGGATGAGGCAATCTCAGTGCATGAGATGGACACCAGCAATGGAGTCCTCTTGCCCTTCTATGACCCAGATACCTCTGTGGTTTATCTGTGTGGTAAGGGTGACAGCAGCATTCGCTACTTTGAGATCACGGACGAAGCCCCTTTCGTCCACTACCTCAGCACCTTCACCACCAAGGAGCCCCAGAGGGGAATGGGATACATGCCCAAGAGAGGCCTGGACGTCAACAAGTGTGAGATCGCCAGGTTTTATAAACTGCACGAAAGGAAGTGTGAACCGATCATCATGACTGTGCCAAGAAAGtctgACCTGTTCCAGGACGACCTGTACCCAGACACGGCAGGACCAGACTGTGCCATTGAGGCGGAGGATTGGTTCGAGGGGAGGAACGGCGAGCCCATCCTCATTTCCTTGAAGAACGGTTACGTCCCTGGCAAGAACCGCGACCTCAAGGTGGTCAAGAAGAACATCCTGGACAACAAGCTGAGCAAGAATGCGGAGAACACGGGCACAGTCAACAAGTCTGCCTCATCCACTCCATCCATAAAAAACGAAGGCAAGCTGGAAGAGATCTTGAAAGAAATCAAATCCCTCAAGGACCTGGTCAGCAGTCAGGAGAAGCGAATCATCCAACTCGAGGAGCAGATGTCCAAGATTGCCATTTAAGGACCCTCCCCTCGCCCCGCCACAATTCAGGACGATCCGTTGGCTGGGAGGTGGGCGGGACACGTCACTGGCAATCTAGACGAGTGTTCCGCCTGAAACCTGCCTAGTAACGATCCCAGGCAACATTCCGAGATTAACTTTTTTCTTAGCCAGCCCCTAACCCTCAGATAAAACAGATGAAATATGGCAAACCATTCCTTTTAATAAGCGGCAGTTTAGTTTTGTTTGTATGAAAATTCTTACAGATTCCTTTTAAGATTGTGACCAAGAAAATTCCAATGTGAACAGTTCCTATGTTTTTATATGTAGGTATCAGTATTTTGTCTCCCCCATACCCCAACTTCTTATCTTGCCAAATTTTTAAGCAGTTTTGTTTACACACCACCTTgacagtatatattttttcttttgttttcactttgttttcTGGGAAGATTCAAAATCCGAACTATAAGGAACAATGCAATACGCTGGTAATGCAAGGAGCAGGATTTCAACAATCAATCAAATACTGTAAAAGACATCAATGAGAACAGACCACTAAACACTCAGAAATTGATCCTGATGTATCATAGAGCGTTTAGATATCAAAGACAACAGAAGTACTGAGGTATACAAGTGGTGACATCATTCATGCTGTAAGTATTGTATGAAAGGTTGCCTTTTGTCTTTTTTTCCTACATCGTAACGGGACCACTGTCTACACTTGCTAACATCGCCTGACCAGAGTTAATGCATGCAATAGATATTCTACTCGAGAGAAATTCTCCGTCTTTGGTCTCTAGCTTGTCTTACTAAGCAAGCAGCAAACAGTCCTTTCATATCATTTGATACCTTCTATAACGTATGTATGCATCTTTCGCAGTAAACAACTTGAACAACGTTTTCATCATCTCCATCTATTTTGTGTCACAGGAACAGAAAGGGTATTAGTGAACTAGATAAAAATGACAGGTTAGATGTCATCTGTACTTCTCGTAGCCTTTAGATTTCACCTTAAACAGGTTTCTTGTTTGTAGTTTACAATGCACATGCCCCAATCCAAAAATAATTTTCAATAATTTCGGTGACCACTGTGATCAACATCGTTAGTTCCAGTCTTATGAAACAGAGGTTTGTCAGTATGTCCCCACTCCCTCTGGCCCTGTGACACAGAtggtatgtatgtactgtaagcTCTGCACTGTAAGTCACAGTGCTACTGACTCATGACATGCAGTCACCTGGGGTGCTTCTTTTGTACAGGTTCGTGTGGCAATGACCTGTGTGCTGCCCAGAGAAGGACCAATGGAATTGTGGGTTATGTCGCTGGTTAACATTTTCACATGCTTTCAGTAGTATATCAGACTTGTTCTGCCTCTTGAGGTGTTTGTGTGTCGATTGTGCAGTCATAAACCCCAATGTTGAACCATGCCCTTGTGTTCAGGGTCCGTGTGCTAGGATGCTCACTATTCACCATCTCATTGGCCCATATCCGTACAGCCGACCAGAGTGAGTGACGGGTGTGTCTGAAACTAAAACAATTTGATCCTGTTTTGAACCTCTGTTGTTTGACAACGGACGACAAGATGTAACGTGGAGAGGCAAGGCTTTCAGGATGTGCGAATATGTGCCTCGTATTACTTTGGCCTTGTTGGAGTTTTTTGTTTCCCCAGATAGGGAATGTGAGAGGGATTTTGGATATTAAATGGATTCACCGTAGGGTGTGACCAAGGTTCTGGCCTATGATAACAGAATTAGATGGTGTGGTGGTGATGATAGTCATTTAAATACTGTATGTTTTAGTCTTGCTTCCTTCTCCGGCTCTCCCATTGCAGATATCCCACTATGTACTTCCTTAGCAGAATTTTAAATAGCTAAATACTCTGTCACATCACTAGAGAATCAGAGGAACAAGGAGTCGTTTGGATCATCTGAATATTTGATGGTGTTGCCAACTACGATAATACAGTAGGTTCTGTTGTCatgctatttttgtttattttccaGGCGGGGTGGGTTAAGGTTCAATATTAGCCTTTAAAGTTTGTTACCACTGAATAGATCAGAAAGTGCCGTAGAGGTGTGCACAGGAAGTGCTTATggaagacagggtttgagaatggTGTGAGTTATTTAGCAGGATAGGGAGTGAATGGGCTGCCTGAGTGGCTAGAAAGCACTGAGAAATGTACGTTTTCATCAATCCATCTTGGAATCCAAGTATCTAAGATTATAACCAAGGATGCAATTGGACACAGAGATATGGATTGGCCAGGGCCAGGGGAGGTTGTCTTGGGTCTTGTGTCCTGTATGTACATCAGTGCTTCTCCTGGGCCTCCTTGGACCACTCAAGGCAGTGAGAGCTGTGGACACGGTAGGTTGGTGAAATATGTAGAGATGTATGTGATGTTTGGAAATAAAGGCCTAGAATATGATTGAAAGCTTTGTAAATAACATGACCATGTAATTGTATTTTTCTTTGTACTttttcttattcatttgttttgtttttgagcTGAAAGAGGGTGTTTGTTTATGGTGGGTTTTAAATGTTTCCTCTTGTCTGCGTTCCCTGCCCTTGCCATAATGCATCATGACAGAACAGAATCTCCATTCTGTCACCGGTATTATAGATACAAAAAGAGCTCAATGAATTACAGAAGAAAAACGAACAAGAATTCAGCCTCTTGTGGAGGTCTGTTCAACATTTTTGTTAATTTCTCCTGCTTCATGTATCAACAACTCATTGATTATCAGAAAAATTAATAAAGAAATGAAAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564262 lncRNA downstream 40667 31424921 ~ 31425166 (-) True G496652
TU564260 lncRNA downstream 41927 31423689 ~ 31423906 (-) True G496650
TU564245 lncRNA downstream 56718 31400719 ~ 31409115 (-) False G496640
TU564240 lncRNA downstream 56718 31407921 ~ 31409115 (-) True G496640
TU564244 lncRNA downstream 62348 31400719 ~ 31403485 (-) False G496640
TU564399 lncRNA upstream 140496 31659480 ~ 31659947 (-) True G496771
TU564403 lncRNA upstream 149049 31668033 ~ 31668357 (-) True G496775
TU564404 lncRNA upstream 150270 31669254 ~ 31669636 (-) True G496776
TU564417 lncRNA upstream 185680 31704664 ~ 31705045 (-) True G496789
TU564429 lncRNA upstream 240163 31759147 ~ 31759455 (-) True G496801
XM_021606139.2 mRNA downstream 1233 31458042 ~ 31464600 (-) True tmem119a
XM_021606135.2 mRNA downstream 20463 31428660 ~ 31445370 (-) False LOC110525736
XM_021606136.2 mRNA downstream 20463 31428660 ~ 31445370 (-) True LOC110525736
XM_021606137.2 mRNA downstream 20608 31428660 ~ 31445225 (-) False LOC110525736
XM_021606132.2 mRNA downstream 145671 31315214 ~ 31320162 (-) True LOC110525734
XM_036979881.1 mRNA upstream 26159 31545143 ~ 31607759 (-) False ssh1a
XM_036979882.1 mRNA upstream 26159 31545143 ~ 31607759 (-) True ssh1a
XM_021606150.2 mRNA upstream 97663 31616647 ~ 31631197 (-) True LOC110525743
NM_001124609.1 mRNA upstream 115792 31634776 ~ 31635836 (-) True ublp
XM_036979883.1 mRNA upstream 121237 31640221 ~ 31641551 (-) True LOC118936268
TU563022 other downstream 890260 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 916383 30545402 ~ 30549450 (-) True G495554
TU562998 other downstream 938287 30526686 ~ 30527546 (-) True LOC110525714
TU561865 other downstream 1790260 29675323 ~ 29675573 (-) True G494542
TU561743 other downstream 1962442 29502253 ~ 29503391 (-) True LOC110525684
TU564400 other upstream 142409 31661393 ~ 31661618 (-) True G496772
TU564405 other upstream 151994 31670978 ~ 31671927 (-) True G496777
TU564492 other upstream 324479 31843463 ~ 31892649 (-) True G496851
TU565305 other upstream 1161058 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 1808523 33327507 ~ 33330504 (-) True G498484

Expression Profile