RNA id: XM_021606174.2


Basic Information

Item Value
RNA id XM_021606174.2
length 3438
RNA type mRNA
GC content 0.48
exon number 25
gene id LOC110525757
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31735854 ~ 31758504 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTGCCTATAACTTGAAGGACACTCCTCAATCTAACATCAGTGAAGAGCGGCGTTGTCGGTTATAAAAGTGAGCCATGTGCACAGAGAGCAGAACTGAGTTCAAAGGTGAAACTGCACTgagcggagagagggaggagcccagagagggagagaggaagggaaaatgAGGTTAAGAGAAGCGAAAGAGGGTAAGAGAAGTTGTGTGCAGAGAGTGTGACTGTGCATTCTGGACTCCCCAGTCTCCCAGACTGAGGTAGGCTGCTGACAGAGGCTGTGGGATCCTACCCTAGCCCTTTGACTGAAGAGAGACACTCTGGATGGTTCATCTGTCCACCAGTTGTCATCGGACGCTCCAGCAACGTTTGTTTTTCATTTAATGGTTTGTTTGTTCCTGGGACAGAGGACATACCTGTCTCTAAGAACACAGGGTGAACCACCTACTCTGCGCGTGTCTGGAACTCTGAGCTGTGGTGAACCTCTGTCTGGGGATCCCTGTGGGGGATCTGTTTTTACATTGTCTCTCTGACGTGTGTCCATGTGCAGTGGAATGTTAGCCCGTGCGTGTCCCTGGAGGCGCGAGGACGCTGGACCTGTGAACtgtgaatgacacacacactgctttagtGGACCACGTCCCCACACCCAAACACACTCAAACTCCTGGACCACTGGTAGCTAGCAGAGCCATGGAGTGTTCGGCAGTGCAGACAGAGACTCCTGGTATCCATGACAACAGTGTAGAGATGACCCTGGAGGAGAGTCCGGTCCTCATCTCCTCATTCTGCACCGAGCTACAGCTATATAGCGTGGATGGAGGAGGGGGGTATGACATAGTGAATAACCAGGTGATACCAACACCGGGGCCACCACCAAACTACAGTTCACACATTGCCTCACTTCAACAAAGCTGGGAGATTAACTACCAGGAAGCAGCCATCtatctacagGAAGGAGAGAACAATGATAAGTTCTTCACACATCCTCGGAATCCAAAGGCGCTGGCAGCATACTTGTTTGCTCACAACCACCTGTTCTACATGATGGAGCTGCTAACAGGACTCCTACTgatggtgctctctctctctgaggctcCCGCTGTACCATCACTACGCCTGGATGTTTATgTCCACGCCACTCTGGAGTTATTGGCTCTGGTTATGGTGGCGTTTGAACTCTGCATGAAGCTGCGCTGGCTCGGCTTCCACACATTCATCAGACACAAGAGGACCATGGTGAAGACGTgtgtgttgctgctccagtttgtGGAGGCCATAGTGGTTCTGATCCGGCAGACGTCACACTTGCGTGTGACCAGAGCTCTCAGACCCATTTTCCTGGTGGACTGCAGATACTGTGGTGCCGttcgcagAAACCTGCGTCAAATCTTCCAGTCCCTTCCCCCTTTTATAgatatcctgctgctgctgctcttctTCATGGTCATCTTCGCCATCCTgggcttCTGTCTGTTCTCCCCTAACACTTCTGATCCATACTTCAACACTCTGGAGAACAGCATCGTTAGTCTTTTTGTACTACTGACCACCGCAAACTTCCCAGACGTGATGATGCCAGCATACTCGAGGAACCGCTGGTCCTGTGTCTTCTTCATCGTCTACCTTTCCATTGAACTCTATTTCATCATGaacctgCTTCTGGCAGTGGTGTTCGATACGTTTAACGGTGTTGAGAAGATGAAGTTTAAATCTCTGATGCTCCACAAACGCTCCGCTATCGACCATGCCTTCCAACTGCTGGTCAGCAgacagAGGCCAATGGGTCTGTCTCTGAAGCAGTTTGATGGTCTAATGCGTTTCTACAGACCCCGTATGTCTGCCAGAGACCGCTTCCTCACATACAAGGCCCTAAACACTGCAGGAGCACCCAtgctcagCCTAGATGACTTCTATAAATTCTATGAAGTAATTGGCCTCAAATGGAAGGCACGGCGGAGCGGGGAACACTGGTTTGATGATCTTCCACACACTACTTTTCTTATCTTCAAAGGCATCAACCTGCTGGTCAAATCTAAAGCCTTCCAGTACACCATGTatGTGGTGGTGGCCGTCAACGGAGTGTGGATCCTCGTAGAAACCTACATGTTGAATAGTGGATTCTCCTCGTCCAGAATAGTCCCCTGGAGCTACATTGTCTTCCTCACCATCTATGgggtggaggtgttgttgaagGTAACAGGCATGGGACCGTTGGCCTACTTCAGCTCCGGCTGGAACCTGTTTGACTTCTTTGTGACGGTGTTTGCCTTTCTGGGCTTGATTGCTCTGGCCTTCGACATGGAGCCCTTCTACTTCATTGTGGTGCTCAGACCACTGCAGCTACTCAGGTTGTTTAAGATAAAGCAGAGGTATCGTAACGTGTTGGACACCATGTTTGAACTCTTCCCGAGGATGGCAAGCCTGGGGCTGACATTGATCATCTTCTACTACTCCTTTGCCATTGTGGGGATGGAGTTCTTCGCTGATGTAGTTTACCCTAACTGCTGCAATACCAGTACAGTAGCAGATTCATACAGGCAGATCAATGTAACCATAGGCAATAGGACGGTGCTGGATGAGGGTTACTACTATCTCAACAACTTCGACAACATTCTCAGCAGCtttgtgactCTGTTTGAGCTGACTGTGGTAAACAACTGGTACATCACCATGGAAGGAGTGACCTCCATGACAACTCACTGGAGCCGCCTCTACTTCATGACCTTCTACATTGTCACCAtggTGGTGATGACCATCATCGTTGCCTTCATCCTGGATGCGTTTGTGTTCCGTATGAACTACAGCCGGAAGAACAAAGAACCACTGTTAGATCCTGAGGATGAGAACGGTATAGTGTTTGAGATGTGTGTAacgatggtgtgtttgtgtggtgtagaTGAGAACGGTATAGTGTTTGAGATGTGTGTAACtatgttgtgtttgtgttgtagaTGAGAACGGTATAGTGTTTGAGATGTGTGTTTGCGTGTTGTAGATGAGAACGGTATAGTGTTTGAGAAGTGTGTAActatgttgtgtttgtgtgttgtaggtgtgtgtttgtgttgtagaTGAGAACGGTATAGTGTTTGAGATGTGTGTAActatgttgtgtttgtgtgttgtagaTGAGAACGGTATAGTGTTtgagatgtgtgtttgtgtgttgtagaTGAGAACGGTATAGTGTTTGAGATGTGTGTAACTATGTTGTTTGTGTGTTGTAGATGAGAACGGTATAGTGTTtgagatgtgtgtttgtgtgttgtagaTGAGAACGGTATAGTGTTtgagatgtgtgtttgtgtgttgtagaTGAGAACAGTATAGTGTTTGAGATGTGTGTAACTATGTTGTTTGTGTGTTGTAGATGAGAACGGTATAGTGTTtgagatgtgtgtttgtgtgttgtagaTGAGAACGGTATAGTGTTtgagatg

Function

GO: NA

KEGG:

id description
K16896 TPCN1; two pore calcium channel protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564417 lncRNA downstream 32573 31704664 ~ 31705045 (-) True G496789
TU564404 lncRNA downstream 67982 31669254 ~ 31669636 (-) True G496776
TU564403 lncRNA downstream 69261 31668033 ~ 31668357 (-) True G496775
TU564399 lncRNA downstream 77671 31659480 ~ 31659947 (-) True G496771
TU564262 lncRNA downstream 312452 31424921 ~ 31425166 (-) True G496652
TU564429 lncRNA upstream 6693 31759147 ~ 31759455 (-) True G496801
TU564565 lncRNA upstream 242004 31994458 ~ 31994683 (-) True G496919
TU564566 lncRNA upstream 242822 31995276 ~ 31995499 (-) True G496920
TU564588 lncRNA upstream 271474 32023928 ~ 32024730 (-) True G496932
TU564607 lncRNA upstream 330433 32082887 ~ 32083103 (-) True G496950
XM_021606156.2 mRNA downstream 81319 31652136 ~ 31656299 (-) False gatc
XM_021606155.2 mRNA downstream 81319 31654447 ~ 31656299 (-) True gatc
XM_021606154.2 mRNA downstream 81320 31654447 ~ 31656298 (-) False gatc
XM_036979883.1 mRNA downstream 96067 31640221 ~ 31641551 (-) True LOC118936268
NM_001124609.1 mRNA downstream 101782 31634776 ~ 31635836 (-) True ublp
XM_036979895.1 mRNA upstream 48515 31800969 ~ 31824128 (-) False LOC110525759
XM_036979894.1 mRNA upstream 48515 31800969 ~ 31824344 (-) False LOC110525759
XM_036979896.1 mRNA upstream 48515 31800969 ~ 31824344 (-) False LOC110525759
XM_036979897.1 mRNA upstream 48515 31800969 ~ 31824346 (-) True LOC110525759
XR_005052063.1 mRNA upstream 52386 31804840 ~ 31806652 (-) True LOC118964859
TU564405 other downstream 65691 31670978 ~ 31671927 (-) True G496777
TU564400 other downstream 76000 31661393 ~ 31661618 (-) True G496772
TU563022 other downstream 1162045 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 1188168 30545402 ~ 30549450 (-) True G495554
TU562998 other downstream 1210072 30526686 ~ 30527546 (-) True LOC110525714
TU564492 other upstream 91009 31843463 ~ 31892649 (-) True G496851
TU565305 other upstream 927588 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 1575053 33327507 ~ 33330504 (-) True G498484
TU566347 other upstream 1580196 33332650 ~ 33336780 (-) True LOC110525812
TU566881 other upstream 2287905 34040359 ~ 34041174 (-) True G498960

Expression Profile