RNA id: XM_036979897.1


Basic Information

Item Value
RNA id XM_036979897.1
length 3189
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC110525759
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31800969 ~ 31824346 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGGAAATCAATGCCAACTCCACAAGAGCCACAATCTCAATGCCACTACACGACAGCACATGCTCTAGGCATATGTGCATGCCCCGAAGCACATACGCATGGATTGCTTCATATGAGACCATTGAGGACGGTTGACACACTAGACCTCCGCTACTGACCGAATAGACAGTAAATGTCCCAGCGCGGAACTGCCATCTGAACACGTGTGTCCCTTGGTGTCAGGTACTGTAGTGTGTGTGATGGCTAACGGCGGGGACCTGTTCGCCATCCCAGAGCGCATGGACACAGACACCGAATCACCGAAAGAGAACAAACCCGAGAATCACACTAGCTCCAGCTCTCCACCGTCACCGGAGACCTCGTGCACACAGCAGgggatggagggaataaAAGTCTACCTGCACGAGCGCGAGCTGTGGGAGAAGTTCCATGAGGTCGGAACAGAGATGATTATCACTAAAGCGGGAAGGCGGATGTTCCCCTGCTACAAGGTGAAGGTTACGGGCCTCAACCCTAAAGCCAAGTACATCCTCCTCATGGATATCGTGCCAGCGGATGACCACCGCTACAAGTTTGCAGATAATAAATGgtctgtGACGGGGAAGGCGGAGCCGGCCATGCCAGGGAGGTTGTACGTCCATCCTGACTCTCCGGCCACCGGAAGCCACTGGACACGTCAGCTTGTCTCCTTCCAGAAACTCAAACTCACCAACAACCATCTGGACCCCTTCGGACACATCATATTAAACTCCATGCATAAATACCAGCCCCGCCTCCATATCGTCAAAGCagacgaatacaacaggtttggTTCCAAGAACACTGCCTTCTGCACGCACGTGTTCTCAGAGACCGCCTTCATCGCCGTGACATCATACCAGAACCACAAGATCACCCAGCTGAAGATAGAGAACAACCCATTCGCTAAGGGCTTCAGAGGCAGTGATGACATGGAGCTGCATCGCATGGCTAAGATACAGGGtAAGGAGTATCCGGTGGTTCCTCGTAGCTCAGTGCGTCAGAGGGTGTGTCCTAGTGGGAGTCCGTTTGGGGGGGAGGCGAAGGGGTTGGGTTTGCACCCCTATTCCTGTGAGAATGGGGTGAGCAGCACCACCCAGGACCTCCTCATCCCCCCTCCAGCCCCCTACACCCTCCCCCAACCAGACACACACGAACACATGCAGGTGTACCACTGCAACAAGAGAAAAGcgGATGATAGCTGTCCTACAGCAGAGAATCACCAGTACAGGAAGCCCTACATCGTCAGTTCTCCCAGCAACGACGAGTCTTACTATCAGCCGTCTGCTtaccctcatccccctctccctccctccgtccacccctctccccctggTCTCTCTGACTCCCCATACAGGTCAGAGGCGGGGCAGCGGCAGGCGTGTATGTTTGCTGGCTCAGAGCCCAGACTGGACAACCTCAGCTGTACATCCTGGTCCTACAGCTGCCCATTGACTCCACCCATGGCCCCCATGACCCCTACTGACCCCTACACAACCTTCCCCCACCAGCCCTACTCCTCCAGTCCCCGGAACGCTCAGCTGAGCTCCATAGCCCACCAAGGCTCTCATCCTCTGGGGGACTCTCTCTCGCACGGCCAGACCCAGAGCTCCAGACCACACCAGACACCCCAACACCCCAGCCCACCCCTCACAGAGTACCACCGctacccctcctccccatctcctcctcagtaCCACACCCTTCACACACATGTCAGGGGAGGGGTCTCCGAATGGAGCGAGGCCACCTGATTGGACCACAGGTATAGGGGAAAGACTCTGATTGGTGGCTTGGGGTTATGTTTATGTGAGGTGTTCTCATTTTATGTGTGAAGAGATTTAATTGGCCAGTTGTGTGTTTCCCTGTGCCATGGGTGGAACGTTAGATTGTCTGTGTGTTACGTTTAAGTCCATCCTCCTCTGACTGGGACCTCTCTGGAAGGAACTGATGTTAGAGGAACTTGGTGGATAAGCATTCAAACTAGAGGGACAGGAAGAAAGATGACGCCATCAACTAAAACGTTCCAAGCTTCATTCCTGAGACTGTTTTTAATACAGTATGTGACCCGTCTGTCACCCTGTCACCCTGTCCCCTGAAGATGTGAGACTGCCTCTCTATGGCCGTGGTTCCCAGTTGGTTTGTGACCCACCGAAATCCCTGTGATCCAACAGACTAAACCATATTTCTAATCTGTGTGTCAGCTCAGCTCAGGGCTGCTGTGAGTTAATGTCGGCTGAGAGGGGCTGCGGTGGCCACAGGCAGAGCAGAAGAGAGATAAACTGTTAGTTTACACCAGGCTGCAGGGAGGAAGacctgcacacacactgacaaacacagaGAACTTGTTTAGAGGCTGCCGCATGGCAGAAGACCTGTACACGGTCCCATTGCATTTTGGGTATATGCACATCTCATCATCATGCAGCTGTCACTGCTGGCCTCTCCTTTACCCCTGAACTGACCAAACAaaactctctgtttctctgaactGACCAACCAACACTTTCCGTTTATCTAAACTGACCTATCAATCAACACTGTCCTTTACCCCGAACTGACCAAAACACTCGATCAACActacatttctgtctctctctgcccctctctctctgtctgtgtttctaccccccccccccctcccctttcaaGCCAGTAGAAGGGAGTCATATAGTCACAGAAGGTTGTGTATAGTCACATTTTAAAACATATTTAGACACCATATGATTATTGTTCTTGTCTAGATATTGTTTTATTTTCCTTGAGAGTCAGTGGGTGCATTAGTTGGAACCAGGTGATGGCCTGGTGTTTTACACTAACACAGGAAGAGTTCGCATTGGTTCACAGAGGATCAGTACGTAAGCACTGTATGTGCAGAGAgagagtcgtgtgtgtgtgtgtgcgaaagCAATACTTTAAAAAGAGACGTCCTGTGATCATTTGAGAAGTGTTTGTACTTTattgtattgttgttgtttatagtATTTATTGGCCTTGAGATTTTGGCTGGTTTTGTTGTAAGATGGTGAAATTACACAGTGTTGGTTGAATTGTTCAAGTTGTTTGTTTCCCAttgaagtttttatttttttgcttttctcCCTCCCGTCTCCTGTCATTTCCTTTTGAATACAATATTTAACATGGTTGTAATAAATGGCTTGTTACTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564429 lncRNA downstream 41514 31759147 ~ 31759455 (-) True G496801
TU564417 lncRNA downstream 95924 31704664 ~ 31705045 (-) True G496789
TU564404 lncRNA downstream 131333 31669254 ~ 31669636 (-) True G496776
TU564403 lncRNA downstream 132612 31668033 ~ 31668357 (-) True G496775
TU564399 lncRNA downstream 141022 31659480 ~ 31659947 (-) True G496771
TU564565 lncRNA upstream 170112 31994458 ~ 31994683 (-) True G496919
TU564566 lncRNA upstream 170930 31995276 ~ 31995499 (-) True G496920
TU564588 lncRNA upstream 199582 32023928 ~ 32024730 (-) True G496932
TU564607 lncRNA upstream 258541 32082887 ~ 32083103 (-) True G496950
TU564613 lncRNA upstream 269102 32093448 ~ 32093762 (-) True G496956
XM_021606173.2 mRNA downstream 42465 31735854 ~ 31758504 (-) False LOC110525757
XM_036979889.1 mRNA downstream 42776 31735854 ~ 31758193 (-) False LOC110525757
XM_036979890.1 mRNA downstream 42777 31735854 ~ 31758192 (-) False LOC110525757
XM_036979891.1 mRNA downstream 42780 31735854 ~ 31758189 (-) False LOC110525757
XM_021606174.2 mRNA downstream 48515 31737618 ~ 31752454 (-) True LOC110525757
XM_021606178.2 mRNA upstream 4384 31828730 ~ 31857288 (-) True LOC110525762
XM_021606180.2 mRNA upstream 35820 31860166 ~ 31864841 (-) True si:ch211-113d22.2
XM_036979898.1 mRNA upstream 42582 31866928 ~ 31882270 (-) False LOC110525764
XM_036979899.1 mRNA upstream 42582 31866928 ~ 31903950 (-) True LOC110525764
XM_021606187.2 mRNA upstream 120203 31944549 ~ 31947393 (-) True srrd
TU564405 other downstream 129042 31670978 ~ 31671927 (-) True G496777
TU564400 other downstream 139351 31661393 ~ 31661618 (-) True G496772
TU563022 other downstream 1225396 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 1251519 30545402 ~ 30549450 (-) True G495554
TU562998 other downstream 1273423 30526686 ~ 30527546 (-) True LOC110525714
TU564492 other upstream 19117 31843463 ~ 31892649 (-) True G496851
TU565305 other upstream 855696 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 1503161 33327507 ~ 33330504 (-) True G498484
TU566347 other upstream 1508304 33332650 ~ 33336780 (-) True LOC110525812
TU566881 other upstream 2216013 34040359 ~ 34041174 (-) True G498960

Expression Profile