RNA id: XM_021606178.2


Basic Information

Item Value
RNA id XM_021606178.2
length 3495
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110525762
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31828730 ~ 31857288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccaaaacACATAGTACTTGATAGTATTTTTTACTTGGGTACTTTACACCACGGCTATTAATGTTTGATGACCCAGCACAATGACAGCCATGAAAACAGTTAAAACCTAAAAGTCAACAACAGAGAAATCAGCGGCAGCGCCAGTGAAGAGTctggctacccaaactccttgTTTCAGCCAGACAAATTCAAGAGTTCATGTCAACGCAGTTcctcatactgtagctactgcAAAAATCGACAAGAGACTAGATCATTTCCGGGAATGGTTCATTCTAATCGCGAGCCCTACCAGGAAAGAAGCCTCAGCTGACAGCGGTGTTCGGGTGCCGCATATATTTCAGATTGTAGACAGATGTCAACTAAGAGAAACAACAGATTTAAACGAGACGTGTTTTACTCTTTGCGACACTTGGGACGCACGCACACCGAACAGTAAAACGGtgATATGTGGTAGCAGGCAGCACTATGCCATACGTGGACAGGCAGAACCGTGTGTGTGGCTTCCTGGATATTGAGGAGAAGGAGGGCAGCAGTCGCTTCCAGAGACGCTacttcatactggacacacagGGCAACACACTGCAGTGGTACATGGACAacccccagAACCTGCCTAGTGGAGCGAACGCAGTTGGGATTCTGCAGCTGACATACATCTCCAAGGTGAGCGAGGCCACGGGGAAACAGAAGTCCAAGACTGAGTTCTGCTTTGTGATCAATGCAGTGTCTCGGCGTTATTTCCTCCATGCCAACGATGCTGCTGACCTGAAAGACTGGGTCCTCGCTCTGAACAAAGCTACCAAGATCACTGTCCCTAAAGCAGGGCCTCTCCAGCCCAGATCAGAGGTTTCTACAGTAACCGGTGAGGCAGTGGGTAAGAGGCTGGCCTACAAGACTGAGATCATCGGGGGAGTGGTGGTGCACACACCCATCTACCAGAATGAGGGTGGGGAAATGGAGGTAGGGGACAGGAGGGTCTCCTCTGTAGGCAGTAGACCAGGTGTACTGAGGTGTGGCTATTGTGTCAAACAGGGTAACgtgAGGAAAAGCTGGAAGAGACGTTTCTTCACACTGGACCACAACGCTGTCAGTTACTACAAGTGTGAGATGGATAAGGAGCCCCTGAGAACTGTTTCTCTGAGAGACATTCAGAAGGTCCATGAGTGTCTGGTGAAATCTGGGGACCTGCTGATGAGAGATAATCTGTTTGAAATCATCACCAGCTCCAGGGTCTTCTACGTCCagACAGACACTCCAGAGGACATGCAGGGCTGGATCAGAGACATTGAGTTGAAGATACAGGACTTCAGAGGCCCTGCCAAGggttctGCATTTACGTATCGCCATGGTAACTCCTCCCACCCACCCTCTGTGTTCCGTGGTCGCCAGGGAGATGACAGGAGACCCCCACTAGTGAAGTCGTGTTCCGTAGCCCCGGGGTGGCAGCCCTGGACCCCCGTACCCCAAAGAGAGGCTCCCGCTCTGGGCACACTGGACAAGGACAGTCACTTTAGCAATCTGCCCTCCAGTCTTTCCTCTcgctccacctcttcctccacctcctcatcttcatcctccccctccactcccactCTCATCCCACAGGGGGTCCCAGCTCCAGCCCTAGCCAGTGGTGTGGGGGTCCCAGCCTGCCCTGGCCCCATAGCTCCAGACCCCTCCAGCAGCCGGAGGAGACACCGCTCTCAGCCTCAGCCCCCCAAAGACCGCAGCTTCCCTTTCAGCCTGGACGATGATGGCATCCGCACCACAGACGTCTAGAACCAACCACTTCTAGAATCAACAAAACTCTGGATCCAACAATATATAGAACCACCATCTAGAACCAATGTGTAGACAGACAAACAATGACACTTGTTTGAGTGCTTTCTACCGTTGAAAGACTGAacctccctcccccacccccttCTCCTCTGCTCTGAGGAGGTAGCTCTGGTGGGGGAGGGTAGTGATGTAAACTGGGGTTCCTGGATGCGTTCTCTCACTGAGGGGTGTGTCAGTAGTGGCTGTGGGCTTTTGGTATAGAGGGtgactcagagagagagcagtcttgGGCAGACTGGGAGGGGTTATCAGTATTAGAGTGTCTGGTGGAATGTGAAGGATATGTTATTTTATTGTACGATTTCCTCTTTAAACTTGAATGTAGTCCACCCAGGTACTGAGATGAAGGAAGGTGAATGCTGTGGTGGAGCCTGGTCTGTCTACCGAACACCCTCCACTAGTCTAAGTCAGCTGGTCTTTTGCTTGTATTAACCAAGGCtacgtcccaattggcacccactatgggtcctggtcaaaagtagtacactatataatgaatatggTGCCACTGCCAATTGGGACCAAACCCAAGGGTCCCGTTCAATCAATACCCTGGTCATGGAACATGTTGGTGTCTGTGGCTCTGCCTGTAGACAGTCCTGTTCTCTTGTTAGACTGCATGCAATTGCGTCAAATCGCTACATCAGCAGCACATTTTGTACATACGCTTTTAGCGTATTTCTGCACGTTGTTCCACAAGCCTGGATTCTCTTGCTCAAATGCAAATGATCTACTATGGTATTGTGTCATGTCACATGTTGTGTTTTGCCTGCCTGCACCTCACCGACCCAGGTCCATGTGTGCTTTTCTCTTCTCTTTAAACTTAACCTGTCATGTTTCTGATTCTTTACATAGACACCTGTTAGAAATCACAAACATCaatatctgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagacacatcggttcaaatactattttaatgTATTTTAATTAATTTTCAATGCATTTGAAACATGTATTCAGATAACCTTTATTTGAAAAAaacaagtagttgaatattggaatgtatttggaCTTATACTtggaaagtatttgaaaatactcaaatacactcccATACATTTAACCCAGTtatttgaaaatagtatttgaataTACTTTTAAAATACAATTTGGTCAactatttgttttttgtttttacaaataACTCAAATAAAAGTACCTGTTTTGGGCTGTGTATTTGAAAACACTGAAATACacaggaaaaaagtatttaaataacaaatgctcaaatacacatgtatttgaacccagagtgtgtgtgtgtgtatctgtgtgttgagTTTATCATGGTTGACTGGCTGGTCAAACATATTAGAGAGGATAATGTTTGTTTTTAAGTTAAGGCATCTTTGATTTCTGTATATGCTCTTTTATCATTTTGCAGTACTGTAATTCCGGAAAGAGAAAGGTTAAATGCTAATGTCTGCTATTTCTAATGCAATTTTTTTTCTCTGATTTAATTCCTGTGGTACAGTATTTCAGATGTAATGGACTGCCTTCTACCTCGTACCTGGTGTCCACTCACCTACCTGATCATAatggtgttgttttttttttttacttataaGCAAGTGCATTAAATAATAAGACAAAAGCTTTTTA

Function

GO: NA

KEGG:

id description
K23796 PLEKHA1_2; pleckstrin homology domain-containing family A member 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564429 lncRNA downstream 69275 31759147 ~ 31759455 (-) True G496801
TU564417 lncRNA downstream 123685 31704664 ~ 31705045 (-) True G496789
TU564404 lncRNA downstream 159094 31669254 ~ 31669636 (-) True G496776
TU564403 lncRNA downstream 160373 31668033 ~ 31668357 (-) True G496775
TU564399 lncRNA downstream 168783 31659480 ~ 31659947 (-) True G496771
TU564565 lncRNA upstream 137170 31994458 ~ 31994683 (-) True G496919
TU564566 lncRNA upstream 137988 31995276 ~ 31995499 (-) True G496920
TU564588 lncRNA upstream 166640 32023928 ~ 32024730 (-) True G496932
TU564607 lncRNA upstream 225599 32082887 ~ 32083103 (-) True G496950
TU564613 lncRNA upstream 236160 32093448 ~ 32093762 (-) True G496956
XM_036979897.1 mRNA downstream 4384 31800969 ~ 31824346 (-) True LOC110525759
XM_036979894.1 mRNA downstream 4386 31800969 ~ 31824344 (-) False LOC110525759
XM_036979896.1 mRNA downstream 4386 31800969 ~ 31824344 (-) False LOC110525759
XM_036979895.1 mRNA downstream 4602 31800969 ~ 31824128 (-) False LOC110525759
XR_005052063.1 mRNA downstream 22078 31804840 ~ 31806652 (-) True LOC118964859
XM_021606180.2 mRNA upstream 2878 31860166 ~ 31864841 (-) True si:ch211-113d22.2
XM_036979898.1 mRNA upstream 9640 31866928 ~ 31882270 (-) False LOC110525764
XM_036979899.1 mRNA upstream 9640 31866928 ~ 31903950 (-) True LOC110525764
XM_021606187.2 mRNA upstream 87261 31944549 ~ 31947393 (-) True srrd
XM_036979904.1 mRNA upstream 116544 31973832 ~ 31984689 (-) False LOC110525767
TU564405 other downstream 156803 31670978 ~ 31671927 (-) True G496777
TU564400 other downstream 167112 31661393 ~ 31661618 (-) True G496772
TU563022 other downstream 1253157 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 1279280 30545402 ~ 30549450 (-) True G495554
TU562998 other downstream 1301184 30526686 ~ 30527546 (-) True LOC110525714
TU565305 other upstream 822754 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 1470219 33327507 ~ 33330504 (-) True G498484
TU566347 other upstream 1475362 33332650 ~ 33336780 (-) True LOC110525812
TU566881 other upstream 2183071 34040359 ~ 34041174 (-) True G498960
TU569190 other upstream 3908078 35765366 ~ 35767929 (-) True G501142

Expression Profile