RNA id: XM_036979898.1


Basic Information

Item Value
RNA id XM_036979898.1
length 3783
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110525764
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31866928 ~ 31903950 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGCAGTCAGCTGATCACTGCTCTGGCATTCAGAGTTGAAgcggaggatggagagagagagaggctgagggagaagAGGCTACTGATGCTACAGTAATCTGTGATCTAACAGAGAGTAAGAAACCAACAGCGTCATCTCAGCTCTGTCAGCCTCTTGTCACGGTTTGTTCCGGGATCAACAATGCAGAAGAGCAGTCTGGGAAACGAAAGCAAAAGGAGGAAgtgaagagagaaacaagagatgCCAAAAAATCAACATCCtttcaaaaagagagagagagaacacacggaTCAGCtccaagacacacagagagagagagagagagagagaaagagagagagagatacaagtaAACAGACTCTGTGGtgagtcactcctcctctcttctactctcctctGGTGCGTTGTTGCTTATGCACAGAGGAGCAGCAGAACTAAGAGAGGAGTTCAATCTAGAGCCAGAGGAGGAGAACCAGACTGTGTGGGAGTAACAGAACCGAGAGTGGAACTGTAGAACCTGTAAGGGACCAGACCCTTACAACCAGGAGTATCATCAGACCCAGTGGGGTGCAACCAGACCCAGGGGGTTGTATACTGTATAGAGGAGCTGGTGTGTCTCTGTAGAGATGTCCTGGGGGTCtttgctgtctccagtccagtGGGCCAAATGGACTTGGTCAGCTGTGcgggggggaggggaggatgagggggaggagggagcgcCCGGAACCAATGATGGAGAAAAttcggACTCAGAAGGGAACTTTGAGACCCCAGAGGCGGAGTCTCCTGGTCTGCTGAATGACCTGACCCAGCTGGATAACTCTGCCCACACAGTCCTCACCAGAGATGTCGGACAGCTGACGCCCCGCCTCGTCCTGGACAGAAACTCCAATCAGGATGTTTATCCCACGTCCCTACAGGAAGTCCAAGATGCCCTAAACAACCTCAATAGCTCCTCCCCTCTGAGTGGAGCAGGTTTAGACCAGAACCTGAACCTGAGGTTGATCTCAAGACCTGGAGAAGGAGATGGTCTCTCCCCGTCCCCTCTGCCCCAGCCCCGCGCCCTACGCCCTGCCTCGCTCCCTGTCCACAACTTCCCTGACCCCGCAGAGGTTGATGACATTTCTCCTATCACCTATGACCCCAACGGCAACATGAACTCTGACCCCAAAAGCCTGACCCCTGAACTGGACAGACCGgactcagacagacagtcacctaGGATGAGCACGGACATCACGAACTCCTGTAAAGTGAAGAAGCTGGACAACCAGACTCCGTTACAGAACACCAGTGGAGAGGACAACGACCATCGCAAAGGTCATGCTACAGATGAGGAGAAGCTAGCCAGCACAACAGGACTCGGAGCAGATGGAGACCACAACGAGCTGAATGTGTCATCCAGACCAGAGGAGTCAGACTGCTGTTCTATGTATGAGGACCCCTGCCAGCTGAAGAACGCCAAGCTGGGAGGAAGTAACACGCAGAAGAAGACAGGAAGTGAGGTTCTAGACGCCATTTGCATCAGCGAGGAGGAGAAAATGGCTGTTCTCACCCTTATCAGAGAGGAGATCATCACTAAGGAGACGGAGGCCAGTGACTGGATGAGAAAGTATGAGGACAGCAGACAGGAAGTCATGGAGATGAGGAAAATTGTGGCAGAGTATGAGAAGACCATCGCCCAGATGATTGAGGACGAACAGCGCAACACCCTGAGCGCCCAGAAGTCTTTGCAGGCTGTAACCATGGAGAAGGAGTTGGCGCTAGCGGACCTGAACTCGGTAGAGCGCTCGCTGTCTGACATGTTCCGCCGCTATGAGAACATGAAGAGCACCCTGGACGGCTTCAAGAAGAATGAGGAGGTGCTGAAGAAGTGTGCTCAGGAGTATCTGGCCAGAGTCAAGCAGGAGGAGCAGAGATACCAGACGCTCAAACTCCACGCCGAGGAGAAACTAGACAAGGCTAATCAGGACATAGCCCAGGTACGCAGCAAGGCCAGCTCTGAGAGTGTTGCTCTGACCGCCAGCCTGAGGAAGGAGCAGATGAGGGTGGACTCTCTGGAGAGAGCCCTGCAGCAGAAGGCCGAGGAAATCGAGGAGCTCACCAAGATCTGTGACGAGCTCATCGCCAAGATGGGCAGAACAGACTGAGACAGATTCCATACGTCCAAATCATTCAATCTTGATCCACCGAGAAATCCCTGCCTACAACCTATGGCATACTCTGCCCTGTGCATGCATCCAGCCAATGAGCAGTTCTGTTTTCCCTTGGGGCGTCTGCCTCTAATGCTGCTGTACTGGTCCGATGTCATATGATAACCCATTTTCTCTTGAGTGGTGTACCCTatggagaatagggtgtcatttgagccAGAGATTGTTACATGTGGACTGTTTTTGTTTTGGTCATTTTCGCCATGCAAGACCAAATCCCTTACTCCCTCCATCTGTCGCTCTGTCCTGTAACTAATATAATACAATGTGCTGTCTAGGCATTGCATAGATTTGGGCTCATTTACCTGACGATAACAGTTTGTGGAGCACTTATTAATAGATTGTGTATATAAACACCCTGGCTgagatgtactgtacatatttatTCTGAACACTAGGAGACTAGGGTGGGACCAGGTAGACGCGCTCTAGGACagttagaggtcaggggtgagCTGTGTTTGACCCTTCTGTATGACTACACTATTACAGGGAGGGGGGGGATATGGGCATAGGGTTTAGGATGCACTGCTATTGATAGGGGTCGTGTGGGGCGTTGTCCTGGAAAGTATAAAGCTTTTCTCCTGTTTGTAATGAGGCCTTGTGTTAGCAGTGGAGGAGgggctgtaggtctactgtataGTCTGCTCTGTGTGGTCTTGGACAGGTTTAGATCACCTCCAGCATACCTGCACAGGGGAGGATTTCTCGCTGTCCTAAACTCCACCTGGTTAGTGTTTGTCTCAGGCCAGTGTGTTGGAGCAGAGAGTAGAATACTCGGTTACTCAATCTGGAAATGGTGAAATTAATACAAAGACTATCTATTTTGTATATGTTCAAGCATACTGAAAACTGGAAGTGTTTGAATGACTGTGGCTGTTATTTTTTAGTTCagaatttttttaaatcctcagaaTATCCTACTCATGTTCCCCTCTGGCCACTGACATGCACAGCACCTGTAGTGTCCAGGTGTGAAACATTATGACATGGCGGTAGAGGGAACTGTTCCAGGGTTACTTGAGCTCCCATTGACCCCGggccaatgtagtgcactatatagggaatagggtgccctttgggacacGCCCAGTGTGTTTCACTGCAGCACCTATTTAGTGGCATAGAAAGATAACGTTTCTCTTATTCACTGCTTAACTGTTCCCAGCTGAACTGGTTGTGTTAAATGCTCGTCACCCCTGTGGAGAGTCACACCGCCTCACAGTACTTGTTCCCTCTCCGCCATACTGCTCTGTGGACGACCATAGTTATACAAGatgcattataaactgggtggttccagccctgaatgctgattcgTTGACAGCCTTCTCTATCATGCACATTTTTGCGCCATTCTGCAGTTGCGTTTCCTCCAGCGTCATTGACGGTTTCGTTAAACATTGTTTTTTTAAAACTGTCACCAATCTCTTTTTTTGAATTGTCATTATTTGTGAAGTGGTAATAAGAAAAGTACAGCTATACTGACTATGTTGACTAATACGGTATATGCAGTGTGTCCTGAGTAAACAAGATTGCAGTAATAAAGGAGTGTGTTCTCATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564429 lncRNA downstream 107473 31759147 ~ 31759455 (-) True G496801
TU564417 lncRNA downstream 161883 31704664 ~ 31705045 (-) True G496789
TU564404 lncRNA downstream 197292 31669254 ~ 31669636 (-) True G496776
TU564403 lncRNA downstream 198571 31668033 ~ 31668357 (-) True G496775
TU564399 lncRNA downstream 206981 31659480 ~ 31659947 (-) True G496771
TU564565 lncRNA upstream 112188 31994458 ~ 31994683 (-) True G496919
TU564566 lncRNA upstream 113006 31995276 ~ 31995499 (-) True G496920
TU564588 lncRNA upstream 141658 32023928 ~ 32024730 (-) True G496932
TU564607 lncRNA upstream 200617 32082887 ~ 32083103 (-) True G496950
TU564613 lncRNA upstream 211178 32093448 ~ 32093762 (-) True G496956
XM_021606180.2 mRNA downstream 2087 31860166 ~ 31864841 (-) True si:ch211-113d22.2
XM_021606178.2 mRNA downstream 9640 31828730 ~ 31857288 (-) True LOC110525762
XM_036979897.1 mRNA downstream 42582 31800969 ~ 31824346 (-) True LOC110525759
XM_036979894.1 mRNA downstream 42584 31800969 ~ 31824344 (-) False LOC110525759
XM_021606187.2 mRNA upstream 62279 31944549 ~ 31947393 (-) True srrd
XM_036979904.1 mRNA upstream 91562 31973832 ~ 31984689 (-) False LOC110525767
XM_021606185.2 mRNA upstream 91565 31973835 ~ 31984689 (-) True LOC110525767
XM_036979915.1 mRNA upstream 139471 32021741 ~ 32032081 (-) False LOC110517556
XM_036979914.1 mRNA upstream 139471 32021741 ~ 32032585 (-) False LOC110517556
TU564405 other downstream 195001 31670978 ~ 31671927 (-) True G496777
TU564400 other downstream 205310 31661393 ~ 31661618 (-) True G496772
TU563022 other downstream 1291355 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 1317478 30545402 ~ 30549450 (-) True G495554
TU562998 other downstream 1339382 30526686 ~ 30527546 (-) True LOC110525714
TU565305 other upstream 797772 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 1445237 33327507 ~ 33330504 (-) True G498484
TU566347 other upstream 1450380 33332650 ~ 33336780 (-) True LOC110525812
TU566881 other upstream 2158089 34040359 ~ 34041174 (-) True G498960
TU569190 other upstream 3883096 35765366 ~ 35767929 (-) True G501142

Expression Profile