RNA id: XM_036979923.1


Basic Information

Item Value
RNA id XM_036979923.1
length 4116
RNA type mRNA
GC content 0.47
exon number 12
gene id serinc5
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32414385 ~ 32469172 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCCATCACGGTAAAaacagtgggaggagagagggggagagaacgagagagacggGGAAGACTGGGTCACACGTACTGTCCCCACGGTCTTTTTAAGTAGATCTCTACAAGAGAACGTCCGGAACTGGAAAAGTGGGCTACATTCTGAAAGGGTATTTTTGACCACCGTAACAAGATGTGTACCCCGCGCTGTATAGGGCAGCTGGCGTGCTGCTGTGGCTCGGCAGGCTGCTCCTGTTGTTGTGGCTGCTGTCCTAAAATCAAGCAGTCCACATCGACACGCTTCATGTATGCCCTCTACTTCCTCCTCGTCACCGTCATCTGTGTCGTCATGATGTCACCCACCGTGGAGCAGGAGATGAGGGACCACaTCCCATTCTACAGTGACCTGTGTGAGAAGCTGAATGCTGGTGAGAACTGCTCTATCTTGGTGGGTTACTCTGCTGTGTACAAGGTCTGCTTCGGCATGgcctgcttcttcttcttcttctgtatcTTCACCCTACGAGTCAACTCTGCCACCGGCTGCCGCGCCGCCATACACaatgggttTTGGTTCCCGAAGTTCATAGTGTTGTTGGCCTGCTGTGTTGGAGGATTCTTCCTGCCAGAGCAGGACACCTTTCTGGAAGtgtggaggtatgtgggagCTGTAGGGGGGTTTCTCTTCCTGCTGATCCAGCTCATGCTGCTGGTGGAGTTTGCCCACAGATGGAACACTAACTGGAGTTCAGGTGTGAAGGACAACCGTCTGTGGTATGGGGCGCTGGCTCTGGCCACCTTGGTGTTGTTCAGTGTCGCCGTAGGAGCTGTGGTGTTCATGGCTCTGTTTTACACACACTCTCAGGCCTGTCTGCTCAACAAGGTGTTCCTGGGGGTCAACGGCAGCCTCTGTTTCATAGTCACTATGCTGGCTATATCTCCCTTCATACAGAGactcCAGCCTAAGTCTGGCCTGCTCCAGCCAGGAGTGATCAGTGTGTACGTCATGTACCTCACCTTCTCAGCCTTCTCCAGCAAGCCCAAAGAGATGTTGGAGGTTAATGGGGTGAAtacgacagtgtgtgtgttccctttCAACTCTGGTTCAGAGAGCGACAAGAGGATCGTAACAGGAGTGGGAACTGTCATCCTGTTCGGCTGTGTGCTCTACTCCTGtttgacGTCCACCACCAGACGGAGCTCTGCAGCGATGCGTGTGATTAGGAACAGCGTGCCTGAGACTGAAAGAGCGCGCTGCTGTTTCTGCTTTGGAGATGACACAGATGACTATGATGAGGAGCAGACTGGAGGAGGACAAAATGTTTTATATGATGAGAGACAGGGAACCATCTACAGCTACCCCTACTTCCACTTTGTCTTCTTCCTGGGTTCACTCTACGTCATGATGACTGTCACAAACTGGTTCCACTATGACAACCATAAGATAGAGAAGCTGCTGGATGGCAGTTGGTCTGTGTTCTGGATCAAGATGGCGTCCTGCTGGGTCTGTCTCATCCTCTACATGTGGACCCTGCTCGCCCCCATGGTCTGCCCCAAACGCTTCGaggcctaacacacacacatgcagacaccgAAACACAGCCCAACGTTATTTTCAGCTTTCTACATGGGTTTTTTGTGTTGCGttttgtttttaatgttttaGTGTTTTATATTGAATTTTTTACCAGTTATGAATACTTTAAGCTATTGTTGCCGGGAAGGCAGTTGATGTCTTTAATTTTTACTATTATTGATGTATGGGGTTACATTCAGGTTGGACTCATAGCTTGACTCTTGGGGGTGCCTAAAACAATGGGCTGGACTAATGTTCATACAATAATGTATGTGGCTCCCCATGGTCCAAGAGGTGCCCAGATTCTGTTATGGGAGTGTCCAGCACCAATATCATTTCCACCCTGTTTACATGTTTGCTTAAATGTGTGATACCCATACTTGTCTCTGTTATTCTTTTATTCCCATGAAGAGAAGTTTCATTTCTCAGGCTCATACATCAGCTTGCTTGTTATTTTCTTGATTttgtttacccctttttctccccaatttcgtggtatctaattggtagttagtcttgtctcatcgctgcaactcccgttcggactcgggagaggcgaaggtcgagagccgtgcgtcctccgaaacacaacccaaccaagctgcttcttgacacaatgcccacttaacccagaagccagcctcactgatgtgtcggaggaaacaccatacgcattgcgcccggcccgccacaggagtcgcttgtgagcgatgggacaaggacatccctaccgaccaaaccctcccctaacccggacgacgctgggccaattgtgcgccgccccatgggtctcccagtcgcggccggctgcgacagagcctggacttgaacccagaatctctagtggcacagctagcactgcgatgcagtgccttagaccactgcgccactcgagaggccCAGCTTGCTTGTTATTGAACCCTTTTGTAGAATACTTTTTCTATGCAATTAAACAAgctgttttgatttgatttgcctgtCTTTAGGTcacacagtcatgtgaaatttgTTAGTTAGGAGTAAATAGGATCGATTATATCAACGCTCCTTTTGAGGCAGAACTTTAAATGCCAGTCGTTTgtacacacacatttattgtaCAGTTGTGTTTTCCAAATAAGCCTCTCTGACTAGCAGAGCGCCGGCTAGCAGGTCAAGGACTGTGAGACCAGAGAGTCACTACTGTTGAAGGGAGCTGCAATCATGGAGGGGGAAATCAACAGTTTGATTTAAAACGTTTGCCAAAGGTAGATCTCAGAAACAAGGAACAGACACGCTCAAGTTTTTCACCCGAGTATCTTCTCCCTCTATAACTGCTGCAATCCTCCAACTCCTCGGCCCTAGAAACGTGCTTGGTGTGCGCTGTGTTGCTGATGAAGGGTTACCTACAGAGCTCCTTTCAGGTGTGTGAAAATAGAAGGGGAAGGGGATATGGGCCATGAACCGGGACCTTAGTGTGTAGTGGTGGTTACTCAACACTGGTTGTTGATGTTATTGACTGAACAAACCCAGACTAAGACTTGCCTGACAGGGAGCAAGAAACTATTCTCCAGAACTCCAAACCATTCAGCTATTATGCTTTTCTGTTTTCATACTTacaaacctacagtatataacccttTTGATACTAATATGAAATATGTACACTTTGGTTTAATATATTGGTATTTGTTGAAGAAAAACAACTTGAAAATTGTGATATTTAAGATGTATGTCTTTTTTTCCCTTAGATTTCAGATGAGATAAATATCAGTGGACTTTGCTGAATAGAATAATCAGATAACCCTATGAGCCAGCAGTTTGTTGATGCATATTTATGCCATAACGTTTCCACTGTGACTGAAGTTTCTTCACCTCAGCCGTTGTTATGAAGGGATTAAACCCGTCTGGAGGGATAGGATGTGTACAGGGTTAGGCTCCATTCATTATCCATTCAGTGATGTCATGGAGGGTTATTGGAATTTCAATTAAACAATGAAATGCTTCCATTAAAAGAAGTACAATAATTGTGAAATAGAATTTCCCTTTACTGAATGATGCTGAATTGACTGGAACCCTGGTGTAAAACATGTTGACTGATCACTTTTTTGAACACCTTTTTGCTATTAGCAGATTCTGTCCACATGTCATTTCAGACGAGTTGTGTTTTTTATCCTGTCTCCTGTGGAGGATCCAGATAGACAGGATGTGGTGCTCTACTGCAGCTCAGCCCTACACCAACTGGTCAACCTCATGTTAACTCATTAGGGATCAAAACCAAACCTTCTGATTGGGCTGTGCGCTGCCATACATGACATGTTGTGGTCCATTTTATGTTCTCCATTGTTAAGATGACCACTTGGTGTGTGCACAGGAGTGTGAGTGGAATGTGAGTGTTTTTGTCTCATTTTATTTGTACAAGAGCACTTGCGTTAGTGAGTTTTGCTCTGTGAAGaaaattgagtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgcatgtTTCCAAACACTGCTCGCACTAATTCTCTGTACACAATTTGATTTAGTCCTAAACACAAAAATAAAACGAACACCTTTTAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K24177 SERINC4_5; serine incorporator 4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564788 lncRNA upstream 23571 32390569 ~ 32390818 (+) True G497117
TU564084 lncRNA upstream 88429 32320513 ~ 32325960 (+) True G496505
TU564078 lncRNA upstream 108084 32305826 ~ 32306305 (+) True G496500
TU564063 lncRNA upstream 128035 32286076 ~ 32286354 (+) True G496486
TU564047 lncRNA upstream 151328 32262355 ~ 32263061 (+) True G496470
TU564940 lncRNA downstream 184799 32653971 ~ 32713205 (+) True G497253
TU565102 lncRNA downstream 468712 32937884 ~ 32938090 (+) True G497402
TU565502 lncRNA downstream 619795 33088967 ~ 33103783 (+) False G497740
TU565501 lncRNA downstream 629599 33098771 ~ 33103783 (+) False G497740
TU565504 lncRNA downstream 629599 33098771 ~ 33103783 (+) False G497740
XM_021606202.2 mRNA upstream 4677 32403411 ~ 32409712 (+) True cdk7
XM_036979919.1 mRNA upstream 163821 32232088 ~ 32250568 (+) False lnpep
XM_036979920.1 mRNA upstream 163821 32232088 ~ 32250568 (+) False lnpep
XM_036979921.1 mRNA upstream 163821 32235450 ~ 32250568 (+) True lnpep
XM_036979918.1 mRNA upstream 189557 32211597 ~ 32224832 (+) True erap2
XM_036979926.1 mRNA downstream 16692 32485864 ~ 32506112 (+) False mtx3
XM_036979927.1 mRNA downstream 16692 32485864 ~ 32506112 (+) False mtx3
XM_036979928.1 mRNA downstream 16692 32485864 ~ 32507844 (+) True mtx3
XM_021606206.2 mRNA downstream 63593 32532765 ~ 32537679 (+) True LOC110525781
LOC118965022 mRNA downstream 139264 32608436 ~ 32620481 (+) True LOC118965022
TU563404 other upstream 1101652 31294946 ~ 31312737 (+) True G495920
TU562768 other upstream 1403785 31008539 ~ 31010604 (+) False si:ch211-225b11.4
TU562769 other upstream 1403785 31009616 ~ 31010604 (+) True si:ch211-225b11.4
TU562537 other upstream 1681499 30732352 ~ 30732890 (+) True G495132
TU562464 other upstream 1837633 30576105 ~ 30576756 (+) True G495076
TU565098 other downstream 458746 32927918 ~ 32928851 (+) True polk
TU565537 other downstream 677295 33146467 ~ 33149998 (+) False LOC110525799
TU565528 other downstream 685519 33154691 ~ 33164261 (+) True LOC110525799
TU565692 other downstream 848465 33317637 ~ 33320348 (+) True c6h22orf39
TU565715 other downstream 992463 33461635 ~ 33465055 (+) True LOC110525816

Expression Profile