RNA id: XM_036979927.1


Basic Information

Item Value
RNA id XM_036979927.1
length 4073
RNA type mRNA
GC content 0.42
exon number 9
gene id mtx3
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32485864 ~ 32507844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacccACTTCCTGATCACGGCAGAAAACAAACATGGCGGCCACCATGGAGCTGAGATGCTGGGGAGGTGATTGGGGTTTGCCTTCCGTCCACACAGAGTCTCTCATAGTGCTGGCCTATGCCAAGTTCTCTGGAGCCACGATCACAGTAACTCCCATAGACTGGACGTGGAAGACTTTGACAGGCACAGTGCCAGAGTTGGTCTACCAGGGATCCACAATAACCGAACCTGCTCAGATTCTCAACTTCCTGAGAAAACAGAGGTTTAATGCAGACTATGAGTTATCGGCGAGGCAGGGAGCAGACACCATGGCCTACATCGCTCTATTGGAGGAGAAACTACGACCAGCCCTGCTACACACATTCTGGGTGGATGCTGAGAACTATGCTAACCTGACTCGGCCGTGGTTCGCTTCccgctctccctttcccctcaacTTCCTGGTCCCTGGTCGCCATGCCAACACAGCCCTGTCCCGGATCCTGCTGACCAAGGGAGAGTCTCCTCTACACACTATCACTGAggtggagggaaagATTTACAGTGAAGCTAAGGAGTGTCTGAATCTGCTTTCCCACAGATTGGGGATGGCCTACTACTTCTTTGGGAACACGCCATGCAGTCTGGATGCGTTTGTGTTTGGCTTTGTAGCTCCCCTCCACAAGGCCAGCCTACCCAGCAGCCCTCTGCAGAGCCACCTCAGACAGCTGGACAACCTCCAGCGCTTCTGTGACCACATACTCAACGCTCACTTCAGCAGTCATCCCGggtctcCCCAGCCGGTTCAGGAGACGGTGGATGCCAACCTGCAGAAACTCACTCAGCTTGTAAACAAAGAGTCCAACCTCATAGAGAAGATGGATGACAACCTGAGGAGCAGCCCTCAGCACAAACCCCTCAGAGCAGACCCCAGACCCAGCCTGGGCAACGACAAGAGCTCTACCCCTGCCTAACCCCTCACCTCTAGCCCTCGACCTCTCACCCCCGACCAGCCTGGTGGATGGGAGGGGTGCTGTATTATACTAAACCTGGTTCTGTAAATGccctagcctgagtgccagtctgtttgtacTAGCATGCCAACTCTTTCTTACTCATTGACAagcaatggagttggcaagagcacaaacagatctgggatcaggctacaaATACCCTAGGTTATCCTTTAAATTATGCATTTGATTGTTTTAGACAGTTTATGCCTTGCAAGTGTAATGAAAACTGCCCTGAATGGAAACTATCAATGAAGAAAAATAATGGCAGAATTGTGGACTATTTAGAGATGATGATGTCTGTAAAAATAGATATGGTTTCATGAAATGAGGGAGAAGTGCACGGCAAAATGGAAAAGTTTTAGTGGTTCAGAGCGGAATGCTGAGGACTGCTACCAAATAAGAAGCCTTTAAACATTGAAAGGCAAGAGGCAGGAAATGAGAAGGCCAGTTGGGTTAAAACGCTCTGAGAGAGAGGTACTGCCTTTCTACTGACCTGCTGTAAGATAGGGAAAACCTTTTCTAACTGATTCTAAAGGGTTTAAATGACTGAGGCCCCAATTCATTCCACCCTGCATTGTAGTATGTATTAAACACAGGAACATGTGAACATGTTTTCTTTCCTGTGGTCGGGTAATATCCAAATGCAAAACTCCTCCCACAGGTACATGTACTGTAGATGCTCTCAGGTTTCAGAAATAAGTTGTGTTCATGGGCAGTGGTCGTGTAAACAAGGTTACTGCATAAACACTAATATGGCAGGTTTGCTGGAATTTATTCATAGATAAGGGCTAAGTCTATGCTAAATATACAAGGCAGTTATTCTTTAGCTCTGTGGTATAATGGGAAATGAAATGTATGGGTCACTTAATCTACATGTTTGTAATGAACAGTACAGGTTGAATTGATGCATCATTTTGAGAGATTCTGGTGTAAATGAGGTCATTACTGACAGGCAGGCACTGACACTGGTCTACTTGTGTTTTGAAACGTCATAGCTACTGTAGTTGCTGTTGCACAGTCCTAAATGATCAGAATCATGCTCTTTCCTCACCTGAGGACTGACTCGACCGTTTCTCTGCTGAGACTCGACGCtcgccccaaatggcaccatattccctatatggtgggctacttttgaccagagcgctatgggccctggtgaaaagcaGTGCACGATAAAGGGACTACAGTGCCTGAAACAAGTTTTCCTCGAGGATTTTGCCAGTGCAAAGCTGTATTTCTAGCTGTCTGTGGTGGTTCCATCCAGACCTGATGTATCTATGTACATAATCATTAAATGTTAGTATTACTTTATGAGGGCATGTGCTGTACAGCTGTCTAGTTTCAGTTAATTTGTGTTCATATTGAATGGGGGGATGTTTAATGCAATGTAGATTATTTTGTTTGTTAGAATGTCACTTATTTTACCGAGGGAGATGTCTAAGCCTAAAGTTTTCCCTTTAACAAATAGATCATCTTTACAACTTGTTTAAGGTAGCTCTGTAAATAGACTTTaagtatatatgtacagtatgtatgctatCATATCGCTGTCGAAGTTAGCTCGTTTAATTAGCTATAGTCCTGCCTCTTCATTAACAGATCGAGTCGTTGTGATTGTAACGCTGTATCAttgtaaatacatttaaatactaATCCAATTTCATTCGGTATTGTGTCTTTATAACGGTGCTGCTTAGATGAATGCGGTTCAACTCTCCTCGTGTGTTTTCTTTCTTTAGCTAAGACTGAAGTGAGTTATTGATTCTACAGTTGGGCTTCATTTATAAGGCATacgtgttttagattattgttcAGCAGTATCAAAAAGCACTACGTTTGTATATTGCCCTACAAAACGCAGTacctatgtttgtttgttttttactgcaaaatctgacttcaAAGTCTTTTTATGTAAAAGACAGCCATTTCTGATATATTCTGATCAAAAGATCAAAGATTTTTGACCAAATTCGTAGTTATTGCGTTTTGCCTTTGTAGGCCAGGCAGTATATTGTGAGGTATTTTACTTCTGATATCAAATCCATCAAGTCTGATCTCAAACACAAACAAAAAAGGTGTAATGGATTCTGACTCAAAAGATGTTGCATATTTTCTCTTTTGACCTCGAATTTGCCCCATGTTGTGGAGTTGTTTTTGTAAAGATGTGTTTTGTTGATCATGATTTTGTCTATATTAGTTATGCTGTGCCTACATCACCATCGCCTTGTCTGTTATGAGCAGGTCCATCTATTTGGGAACATGCCTTGCATTAGACAATGATGGAGAACTCTGCTAACATACTGTACGCCATCTCTGCCTGCAGATGTCAGAAGTATGTCATTACTGCATGTTTGAAGTATGTCATTTGTCTCCCACTGACATCCAGAGACATATATTTGTATGACTCTGGTGACATCCAGGCATCAGCTACTGTAATAGTGGCTCTATTCACCTGAATGTTCCATGTTGTTTCCTGTGCTGTTGTTTACTTCCTTTGTTGACAGGATTAACAGGGACTGTTCAGTGCTTAAAGGGAATGTATCCATGTAGTGAATATTCCCTTTAAGCAATTAATATTATTCACTTCATGGATACATTCCCTTTAAGCGCTATGGAATTAGTTACAACTTTATTCATTGTTTTGGTTTGTGTAAGAAAGAGAAGAAAGGTTGAAATACATGTAtaggagaaagggagacagtGTTAGGAaggactggtactgtgtgtcttGATAAGACTGCAGAAGCGATTGTATAGCTGTAAACTACTGTAACCAACTTTCTCAGATTAAACTCATGTTTGGAATTGTAATAACACTATTGTCACTTTTATCCAAGTTCAGAAAGTCACAGTTAGGATTTGGCCCATTGTCCTTAGCTGGTCAATACTTGAAGTTCAAACAACTTTAGTAAATTCATTCTCCTGAGgttttgtgatgggatgaaaaaCAGAGTTTTAACCATGATATTGCCATTGTAATATCATATTCCTGGTTCATTCTTTGTGCATGGTTGCAAATGAATGCTTTCATTTCAATTTAATAAAAGTATAACCTAACCACCTATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564828 lncRNA upstream 20452 32464030 ~ 32465412 (+) True G497153
TU564821 lncRNA upstream 41326 32441571 ~ 32444538 (+) True G497146
TU564788 lncRNA upstream 95046 32390569 ~ 32390818 (+) True G497117
TU564084 lncRNA upstream 159904 32320513 ~ 32325960 (+) True G496505
TU564078 lncRNA upstream 179559 32305826 ~ 32306305 (+) True G496500
TU564940 lncRNA downstream 147859 32653971 ~ 32713205 (+) True G497253
TU565102 lncRNA downstream 431772 32937884 ~ 32938090 (+) True G497402
TU565502 lncRNA downstream 582855 33088967 ~ 33103783 (+) False G497740
TU565501 lncRNA downstream 592659 33098771 ~ 33103783 (+) False G497740
TU565504 lncRNA downstream 592659 33098771 ~ 33103783 (+) False G497740
XM_036979924.1 mRNA upstream 16692 32414388 ~ 32469172 (+) False serinc5
XM_036979923.1 mRNA upstream 16692 32414389 ~ 32469172 (+) True serinc5
XM_036979925.1 mRNA upstream 19383 32414385 ~ 32466481 (+) False serinc5
XM_021606202.2 mRNA upstream 76152 32403411 ~ 32409712 (+) True cdk7
XM_036979921.1 mRNA upstream 235296 32235450 ~ 32250568 (+) True lnpep
XM_021606206.2 mRNA downstream 26653 32532765 ~ 32537679 (+) True LOC110525781
LOC118965022 mRNA downstream 102324 32608436 ~ 32620481 (+) True LOC118965022
XM_021606207.2 mRNA downstream 141581 32647693 ~ 32667410 (+) False LOC110525782
XM_036979930.1 mRNA downstream 141656 32647768 ~ 32667410 (+) True LOC110525782
LOC110526889 mRNA downstream 161585 32667697 ~ 32668444 (+) True LOC110526889
TU563404 other upstream 1173127 31294946 ~ 31312737 (+) True G495920
TU562768 other upstream 1475260 31008539 ~ 31010604 (+) False si:ch211-225b11.4
TU562769 other upstream 1475260 31009616 ~ 31010604 (+) True si:ch211-225b11.4
TU562537 other upstream 1752974 30732352 ~ 30732890 (+) True G495132
TU562464 other upstream 1909108 30576105 ~ 30576756 (+) True G495076
TU565098 other downstream 421806 32927918 ~ 32928851 (+) True polk
TU565537 other downstream 640355 33146467 ~ 33149998 (+) False LOC110525799
TU565528 other downstream 648579 33154691 ~ 33164261 (+) True LOC110525799
TU565692 other downstream 811525 33317637 ~ 33320348 (+) True c6h22orf39
TU565715 other downstream 955523 33461635 ~ 33465055 (+) True LOC110525816

Expression Profile