RNA id: TCONS_00032040



Basic Information


Item Value
RNA id TCONS_00032040
length 247
RNA type processed_transcript
GC content 0.43
exon number 2
gene id XLOC_016253
representative True

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 15102103 ~ 15107716 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ttcaGTTTATTCCGTGCTTCATCCAGAAAGACACTAAATTGTATACAAGACTTACATCTGTACTGCTGCTAACCACAAGGAGCCGTGATGGGGTCTTGGATGGTCAGCACAAGCTTCTTGTCTATGCTCACCGTCAGTGTGAACTGAGGTCTTCCTATTAAAGCTACAAGAAAAGAACAGTATTAATGGACTTAATACATGACTTGAGGTACTACTCTAGTATGCGAACTGAGAACGCGAGGTCGGA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000135324

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00033793 lncRNA downstream 137884 14962493 ~ 14964219 (-) True XLOC_016248
TCONS_00033358 lncRNA downstream 152477 14933798 ~ 14949626 (-) True XLOC_016246
TCONS_00032031 lncRNA downstream 162100 14938586 ~ 14940003 (-) True XLOC_016247
TCONS_00033792 lncRNA downstream 270980 14737043 ~ 14831123 (-) True XLOC_016243
TCONS_00033794 lncRNA upstream 529503 15637219 ~ 15650590 (-) True XLOC_016258
TCONS_00032050 lncRNA upstream 913941 16021657 ~ 16027339 (-) True XLOC_016259
TCONS_00033795 lncRNA upstream 1107379 16215095 ~ 16218098 (-) False XLOC_016260
TCONS_00033359 lncRNA upstream 1258358 16366074 ~ 16376418 (-) True XLOC_016261
TCONS_00032058 lncRNA upstream 1280253 16387969 ~ 16393313 (-) True XLOC_016262
TCONS_00032038 mRNA downstream 60257 15035090 ~ 15041846 (-) False XLOC_016252
TCONS_00032039 mRNA downstream 61758 15035093 ~ 15040345 (-) True XLOC_016252
TCONS_00032035 mRNA downstream 68940 14998612 ~ 15033163 (-) False XLOC_016251
TCONS_00032034 mRNA downstream 68967 14998612 ~ 15033136 (-) False XLOC_016251
TCONS_00032036 mRNA downstream 70245 14998613 ~ 15031858 (-) False XLOC_016251
TCONS_00032041 mRNA upstream 1812 15109528 ~ 15125512 (-) True XLOC_016254
TCONS_00032042 mRNA upstream 192372 15300088 ~ 15324837 (-) False XLOC_016255
TCONS_00032043 mRNA upstream 196486 15304202 ~ 15318786 (-) True XLOC_016255
TCONS_00032044 mRNA upstream 233973 15341689 ~ 15362923 (-) False XLOC_016256
TCONS_00032045 mRNA upstream 235414 15343130 ~ 15349382 (-) True XLOC_016256
TCONS_00032037 other downstream 68982 15028646 ~ 15033121 (-) True XLOC_016251
TCONS_00032033 other downstream 107613 14994393 ~ 14994490 (-) True XLOC_016250
TCONS_00031998 other downstream 1847306 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00031991 other downstream 2877564 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031983 other downstream 3439180 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00032063 other upstream 1401108 16508824 ~ 16512422 (-) True XLOC_016264
TCONS_00032069 other upstream 1508224 16615940 ~ 16616055 (-) True XLOC_016267
TCONS_00032073 other upstream 1836556 16944272 ~ 16944391 (-) True XLOC_016269
TCONS_00032082 other upstream 2231702 17339418 ~ 17392808 (-) False XLOC_016272
TCONS_00032083 other upstream 2246115 17353831 ~ 17392719 (-) True XLOC_016272

Expression Profile


Expression of TCONS_00032040 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.
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Expression of TCONS_00032040 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.