RNA id: XM_021606247.2


Basic Information

Item Value
RNA id XM_021606247.2
length 1317
RNA type mRNA
GC content 0.44
exon number 3
gene id c6h22orf39
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33317578 ~ 33320353 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaGGAATTACataaataggcggggtttattaATTTTTGGTTtaggtaactagtgacgaccttTTCACAGTGCTTGATTGGCCGTTTTCGTCCTCTTGTCAAAAGTCAAAACAACGGAGGTGATGATGGCAGATTCTGGAGCAATGTGGAGGCCGCCCCGGACCTGTGATGACTACTGGAGTGAATTCAGACACTGCAAAAGCCTGTGGAACCGTTTCCATAACTACTATGCCCATGGCACATCCCCCTCCTGCGGGCAGTGGAAAGAAGACTACTACTCATGTAGAGAGTGGGAGAAGAACCCATGCCCTGAGACCAAGGAGTCTTTACAGCAGAGTGAGAGGAACCGGGAGGCAGAGCAGAGGAAGTTCACCCCTGTGTGGGACCTGAGACGAGATCCGCCCAGAGACTGGCACATGCCCCTGCACCAGGGAAAGTCCCCAGATTCCCAGTCCTAACCATCCCCTGGGTCAATACTGCCATGGCCCTAATCATGGGCAGACCAAGGTCAATGTGGCATCTGAGATCTGTTTCACTACACAAACTTAACCAATTCTTCTAGCTTTAACTGTAGAGATTGTGGCTAGGGAGCCATGGTCCTGGGGTTATTCAGAGCAATCCATTGACATTAGAGCTAGAATTTTAAAGTACAAGTATTTTTGGAACAAGTCATAATTGTTCATGGCAGAATGTATGTTCTACACAATGTATTTTTACTTTATGTTCTTGAACTTTTCTGAATATGCCCCTTGCAGAGGGTGTGAAGGCTTTTGTCCCAGCTAATATGCTCTTAACCACCTGACTCTTATTGGTTCAGTTGAAACCATGTTTAGAAAGGTGTTTTAGTGCTAGGCTTGGTTGGGGAAAAGCCTGCTCTCCAGGAACAAAACCACTCTGGCGTAGATTTTTTTTCCAGAGGTGTCCAATTTTCTTCACTGGTATTAGGGCGGTGTTCTCTACTGCTAGAAAGTTCTACTCTAATCAAAAACAAAATTATTGATAGTGGCAGAGTGTTGTGCATTCTTTCCATACATTATGTGTGTACTGGGAAATAATATTTTGGGGAACAGCTAAAAGAGATACTGGATTAGGAAAAGGGTAGGCACACCATCCAGTATTCTGGCTTCCACCAGTGGTCTGACTGTTTTTGTCTCGTCATTGTGTGGAAAGAGACTCTACCTATTGCAATTGAGGCCAGTGTTTCTGTAACACCGTTACACAGGATCTTTGCCTTTTATTATTTCACATGATACCTTATCTAGTgttacatacatgcatacataaaaatgcatttcaaataaaacaaatgtgaaTCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU565621 lncRNA upstream 107789 33208850 ~ 33209789 (+) True G497855
TU565619 lncRNA upstream 118087 33199265 ~ 33199491 (+) True G497853
TU565618 lncRNA upstream 119039 33198142 ~ 33198539 (+) True G497852
TU565615 lncRNA upstream 120190 33193078 ~ 33197388 (+) True G497849
TU565514 lncRNA upstream 134426 33180315 ~ 33183152 (+) True G497749
TU565693 lncRNA downstream 12297 33332650 ~ 33336735 (+) True G497921
TU565697 lncRNA downstream 26722 33347075 ~ 33347369 (+) True G497925
TU565705 lncRNA downstream 48361 33368714 ~ 33368925 (+) True G497933
TU565711 lncRNA downstream 58553 33378906 ~ 33379166 (+) True G497939
TU565721 lncRNA downstream 64271 33384624 ~ 33384857 (+) True G497944
XM_021606245.2 mRNA upstream 403 33313355 ~ 33317175 (+) True LOC110525806
XM_021606244.2 mRNA upstream 36630 33279198 ~ 33280948 (+) True LOC110525805
XM_021606235.2 mRNA upstream 140418 33173522 ~ 33177160 (+) True LOC110525801
XM_036979945.1 mRNA upstream 152392 33135282 ~ 33165186 (+) False LOC110525799
XM_021606246.2 mRNA downstream 1586 33321939 ~ 33326388 (+) True LOC110525808
XM_021606249.2 mRNA downstream 7150 33327503 ~ 33331597 (+) True LOC110525811
XM_036979953.1 mRNA downstream 32319 33352672 ~ 33367435 (+) False LOC110525814
XM_036979955.1 mRNA downstream 32319 33352672 ~ 33367435 (+) False LOC110525814
XM_036979951.1 mRNA downstream 32333 33352686 ~ 33367435 (+) False LOC110525814
TU565528 other upstream 153317 33154691 ~ 33164261 (+) True LOC110525799
TU565537 other upstream 167580 33146467 ~ 33149998 (+) False LOC110525799
TU565098 other upstream 388727 32927918 ~ 32928851 (+) True polk
TU563404 other upstream 2004841 31294946 ~ 31312737 (+) True G495920
TU562769 other upstream 2306974 31009616 ~ 31010604 (+) True si:ch211-225b11.4
TU565715 other downstream 141282 33461635 ~ 33465055 (+) True LOC110525816
TU567034 other downstream 830787 34151140 ~ 34151737 (+) True G499111
TU573608 other downstream 5949606 39269959 ~ 39311874 (+) True fancc
TU574234 other downstream 6353659 39674012 ~ 39678263 (+) False LOC110525927
TU574235 other downstream 6353659 39674012 ~ 39678263 (+) False LOC110525927

Expression Profile