RNA id: TU565692



Basic Information


Item Value
RNA id TU565692
length 1253
RNA type TUCP
GC content 0.44
exon number 3
gene id c6h22orf39
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33317578 ~ 33320353 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cttTTCACAGTGCTTGATTGGCCGTTTTCGTCCTCTTGTCAAAAGTCAAAACAACGGAGGTGATGATGGCAGATTCTGGAGCAATGTGGAGGCCGCCCCGGACCTGTGATGACTACTGGAGTGAATTCAGACACTGCAAAAGCCTGTGGAACCGTTTCCATAACTACTATGCCCATGGCACATCCCCCTCCTGCGGGCAGTGGAAAGAAGACTACTACTCATGTAGAGAGTGGGAGAAGAACCCATGCCCTGAGACCAAGGAGTCTTTACAGCAGAGTGAGAGGAACCGGGAGGCAGAGCAGAGGAAGTTCACCCCTGTGTGGGACCTGAGACGAGATCCGCCCAGAGACTGGCACATGCCCCTGCACCAGGGAAAGTCCCCAGATTCCCAGTCCTAACCATCCCCTGGGTCAATACTGCCATGGCCCTAATCATGGGCAGACCAAGGTCAATGTGGCATCTGAGATCTGTTTCACTACACAAACTTAACCAATTCTTCTAGCTTTAACTGTAGAGATTGTGGCTAGGGAGCCATGGTCCTGGGGTTATTCAGAGCAATCCATTGACATTAGAGCTAGAATTTTAAAGTACAAGTATTTTTGGAACAAGTCATAATTGTTCATGGCAGAATGTATGTTCTACACAATGTATTTTTACTTTATGTTCTTGAACTTTTCTGAATATGCCCCTTGCAGAGGGTGTGAAGGCTTTTGTCCCAGCTAATATGCTCTTAACCACCTGACTCTTATTGGTTCAGTTGAAACCATGTTTAGAAAGGTGTTTTAGTGCTAGGCTTGGTTGGGGAAAAGCCTGCTCTCCAGGAACAAAACCACTCTGGCGTAGATTTTTTTTCCAGAGGTGTCCAATTTTCTTCACTGGTATTAGGGCGGTGTTCTCTACTGCTAGAAAGTTCTACTCTAATCAAAAACAAAATTATTGATAGTGGCAGAGTGTTGTGCATTCTTTCCATACATTATGTGTGTACTGGGAAATAATATTTTGGGGAACAGCTAAAAGAGATACTGGATTAGGAAAAGGGTAGGCACACCATCCAGTATTCTGGCTTCCACCAGTGGTCTGACTGTTTTTGTCTCGTCATTGTGTGGAAAGAGACTCTACCTATTGCAATTGAGGCCAGTGTTTCTGTAACACCGTTACACAGGATCTTTGCCTTTTATTATTTCACATGATACCTTATCTAGTgttacatacatgcatacataaaaatgcatttcaaataaaacaaatgtgaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU565621 lncRNA upstream 107848 33208850 ~ 33209789 (+) True G497855
TU565619 lncRNA upstream 118146 33199265 ~ 33199491 (+) True G497853
TU565618 lncRNA upstream 119098 33198142 ~ 33198539 (+) True G497852
TU565615 lncRNA upstream 120249 33193078 ~ 33197388 (+) True G497849
TU565514 lncRNA upstream 134485 33180315 ~ 33183152 (+) True G497749
TU565693 lncRNA downstream 12302 33332650 ~ 33336735 (+) True G497921
TU565697 lncRNA downstream 26727 33347075 ~ 33347369 (+) True G497925
TU565705 lncRNA downstream 48366 33368714 ~ 33368925 (+) True G497933
TU565711 lncRNA downstream 58558 33378906 ~ 33379166 (+) True G497939
TU565721 lncRNA downstream 64276 33384624 ~ 33384857 (+) True G497944
XM_021606245.2 mRNA upstream 462 33313355 ~ 33317175 (+) True LOC110525806
XM_021606244.2 mRNA upstream 36689 33279198 ~ 33280948 (+) True LOC110525805
XM_021606235.2 mRNA upstream 140477 33173522 ~ 33177160 (+) True LOC110525801
XM_036979944.1 mRNA upstream 152451 33135282 ~ 33165186 (+) False LOC110525799
XM_036979945.1 mRNA upstream 152451 33135282 ~ 33165186 (+) False LOC110525799
XM_021606246.2 mRNA downstream 1591 33321939 ~ 33326388 (+) True LOC110525808
XM_021606249.2 mRNA downstream 7155 33327503 ~ 33331597 (+) True LOC110525811
XM_036979953.1 mRNA downstream 32324 33352672 ~ 33367435 (+) False LOC110525814
XM_036979955.1 mRNA downstream 32324 33352672 ~ 33367435 (+) False LOC110525814
XM_036979951.1 mRNA downstream 32338 33352686 ~ 33367435 (+) False LOC110525814
TU565528 other upstream 153376 33154691 ~ 33164261 (+) True LOC110525799
TU565537 other upstream 167639 33146467 ~ 33149998 (+) False LOC110525799
TU565098 other upstream 388786 32927918 ~ 32928851 (+) True polk
TU563404 other upstream 2004900 31294946 ~ 31312737 (+) True G495920
TU562768 other upstream 2307033 31008539 ~ 31010604 (+) False si:ch211-225b11.4
TU565715 other downstream 141287 33461635 ~ 33465055 (+) True LOC110525816
TU567034 other downstream 830792 34151140 ~ 34151737 (+) True G499111
TU573608 other downstream 5949611 39269959 ~ 39311874 (+) True fancc
TU574234 other downstream 6353664 39674012 ~ 39678263 (+) False LOC110525927
TU574235 other downstream 6353664 39674012 ~ 39678263 (+) False LOC110525927

Expression Profile