RNA id: XM_036979959.1


Basic Information

Item Value
RNA id XM_036979959.1
length 2213
RNA type mRNA
GC content 0.48
exon number 19
gene id LOC110525816
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33447246 ~ 33465055 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTGGAATGCAAAtgatcagagagaaagagagagagagagagagagagagagaggcgcatCAGGACTGTTGTAGCTGCTAGCCTAACTGTTCATAGTTCAGTGTTCCTTGTCCCGCTCTTACTCTAATGTGTATTTGCATCTGAGGTCAGCAACAAAGGAATTTCCTcatgagttgagaggagagacTCCAAAATTATGACAATGAGTTTCTTTGGAAAATTGAAGAACCTACACAGTGGGCCTCCAGCTCCACCCAAAAGAATAGAGAACAATGCGGGGTATGGTGGCTGGCCAGAAGATGAGTTTGACGATGAGGATGGGAACACATATGAGGCTCCCCCCTGTGAGCGACCGGCCATGAAGGTTCCTCCCAGACATGTGGAGGAGAACGTCTATTTAGATAGTTCTTCAGAGAGGTCCAATCGTGTTCTTCCCAAAAGGCAGGCAGCACCACCCCCAAGGCCAGCCAAGATGGCGCCCATGGGCAAAGCATCGAAACAGCAGCCTCACCATCAGCCTGACCCTGAGGAGTTCTACATCGACCCCAACACCAAGAAACctcctgaGGTAGACAGGAAGGAGAAGCCAGGGAAAAGGTCTACTCCTAAGAAGTCTGCCCCTCCTCCTTCCCGCCCTGCCTCTGctcccacccctccccctgcAGAGGAAGATGTCTACCTGGATCCTAATGAAGGACAGGCAGACAGTGATGACCTGTATCTGGAGCCCACAGCAGCTTGCCCCCCTGCTCCTCGCGGGCCCATAAGGATGCCCCTCCTACCCAAGACAGCAATTGCCCCTCCCCCCATGCCCATaAAACCTCCAGTACCCAGAGCCAAGTCGAGTTCTCTACTGGTCAGTGAGGCAAAGACAGCTCCTCCGCCTGATGTGAAACGCTCCACGTTCCCTGGCAAGCTGCCCCCACCCACCCCAGGCATCAAACCCCCCCTCCCTGCATCCCTAAAGGAACCCAAACCCAGCCCCCCTCCCCCGCCCATTATAGACACTACCGCAGCAGTTTCTCCCTCTGGTATGCAGACAACCATGCAGGCAGGAAAGGAGGAGAAAGAGTGGTTCGCTGGAAACTGCAATAGAAAGACTGCTGAGGACCTCTTAATGCAGATCAACAAGGATGGGGCATTCCTGATACGTCACAGTTCAGCCCAGAACGCCCGTCAGCCCTACACACTGGCTGTCCTATACAGACAGAAGGTCTATAACATCCCCATCCGCTTTCTGGAGGAGACGCGCGGCTACGCCCTCGGAAAGGAGGGCAAGAAGAACGAGGAGtTTTTCAGTAGTCTCCAGGAGATCATCTCTCACCACAAGAATAACCAACTGCTGCTGATCGATAGCAAGAGTCAGGCCAAGCACACCACGTATCTCACCCATCCAGCCCATCCATAAACAACATTATCCATAACCCACACACAATATATATCACCCACCCAGCCTGacaaactacactacactactatagggtggcaggtagcctagcggttagagcgttgggccagtaactgaaatgtcGCTGATTTGAATACTTGAGTCGATAAGGTGAAAAAtcggtcaatgtgcccttgagcaaggcacctaatttgctccagggccGCCGTGCTACTATTGCTGACCCTGTCCAAAAAAAcacatcactgcacctgtacatttcACTTCgctgtatgtgacaataaatcAAAAATCTTTTCATAACCCACAGAAATGTGTATCTCACCTACACCAGCCCATTCATAAAGTACATTAAATGCTACCATTAATAACTAAATACATTTGATAACTTGGAAATACTACCTTCAATCGTCATGTTCCTCACCACAAGATATCCATTACAAACCCTCgtttttgttttgtgatgaaAATGGCTAGAAGTGTACATATTACCGTAtatctgtgtactgtatgtgtttgtgtgtttaagtATGCTGTAATTATGTCTGTTTGACTTTATTAACCTATTTTTGATTGAAATTAGATTAATTTTAAAATGCTTGCACCTGAATAGAGTAGTGAGTAGTCTATGAAAAGGTATATTCAATACCTCATTCTTGCTCTGAGTCTTTATGCAGTGCTTGTTTCAGTGAGTGATGGGGAATTCAATTTTGTGTCTACACCTGTGTTGTGACTGAATACTGTGTAAGTGGGCCATCTGTAAGTTTCtatttatataataatatagtctgAAATGTTTTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU565735 lncRNA upstream 45721 33401208 ~ 33401525 (+) True G497958
TU565725 lncRNA upstream 58827 33388179 ~ 33388419 (+) True G497948
TU565723 lncRNA upstream 60614 33385727 ~ 33386632 (+) True G497946
TU565722 lncRNA upstream 61868 33385161 ~ 33385378 (+) True G497945
TU565721 lncRNA upstream 62389 33384624 ~ 33384857 (+) True G497944
TU565790 lncRNA downstream 48454 33513230 ~ 33513454 (+) True G498010
TU565798 lncRNA downstream 57545 33522321 ~ 33522610 (+) True G498018
TU565792 lncRNA downstream 79593 33544369 ~ 33545595 (+) True LOC110525819
TU565847 lncRNA downstream 283244 33748020 ~ 33750556 (+) True LOC110525823
TU565963 lncRNA downstream 313442 33778218 ~ 33779928 (+) True G498174
XM_036979958.1 mRNA upstream 7575 33420413 ~ 33439671 (+) False LOC110525815
XM_036979956.1 mRNA upstream 7575 33420414 ~ 33439671 (+) False LOC110525815
XM_036979957.1 mRNA upstream 7575 33420437 ~ 33439671 (+) True LOC110525815
XM_036979953.1 mRNA upstream 79811 33352672 ~ 33367435 (+) False LOC110525814
XM_036979955.1 mRNA upstream 79811 33352672 ~ 33367435 (+) False LOC110525814
XM_021606255.2 mRNA downstream 1216 33465992 ~ 33508271 (+) False LOC110525817
XM_021606256.2 mRNA downstream 1217 33465993 ~ 33508271 (+) False LOC110525817
XM_021606257.2 mRNA downstream 20573 33485349 ~ 33508271 (+) True LOC110525817
XM_021606258.2 mRNA downstream 50474 33515250 ~ 33568701 (+) False LOC110525819
XR_002473830.2 mRNA downstream 99924 33564700 ~ 33568701 (+) False LOC110525819
TU565692 other upstream 126898 33317637 ~ 33320348 (+) True c6h22orf39
TU565528 other upstream 282985 33154691 ~ 33164261 (+) True LOC110525799
TU565537 other upstream 297248 33146467 ~ 33149998 (+) False LOC110525799
TU565098 other upstream 518395 32927918 ~ 32928851 (+) True polk
TU563404 other upstream 2134509 31294946 ~ 31312737 (+) True G495920
TU567034 other downstream 686364 34151140 ~ 34151737 (+) True G499111
TU573608 other downstream 5805183 39269959 ~ 39311874 (+) True fancc
TU574234 other downstream 6209236 39674012 ~ 39678263 (+) False LOC110525927
TU574235 other downstream 6209236 39674012 ~ 39678263 (+) False LOC110525927
TU574236 other downstream 6209236 39674012 ~ 39680031 (+) False LOC110525927

Expression Profile