RNA id: XM_021606289.2


Basic Information

Item Value
RNA id XM_021606289.2
length 3761
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110525837
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 34376151 ~ 34414688 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGATGTCCTCAATATGAACCAGTATAGACCTACTGTCCTCAATTAAGTTTAGAGATTATGTAAATATGATCCGTTTGCTTTTTTGATTAAATCCTTTTTTCCCTGCTGAAAAAAAATCGAACAATATATCATAATAGCAGGTATACACCAAGTCCTATAGCCTTAAGTACATGAGTAGTAAAATGTTTGATACGTTTCAATTACCTTGCATGGACTTGTATCTTTGTGAACACATTTTCGTGTTTGAGCGTTCGCAGATGGATCTAAACCGCTCGTGGGAAAATGTATTTCTGTCAGCGAATTAGCCTACCCTAAGCCACACTGGGAAACAAGCGCGTTGTGAAATCAACCTAAAAATAGCTTAACATGCAACGTTTTTTATGACGTTTTAGTGATTTTTCTGGGAAGATTTCTTTGAAGATAACTCGATGCTGGCCATAAAATTCATCATTGTTTTTCGCCTCTTCTTGCGCATTTGGAGAGGCGCGGATCACTCTTTTGGGAAGGTGAAACGCTCTGACTGTGCATGGCTTTAAGGTTTGGACTAATGTTTCTCAGTACTGGCTGTCTTGTTACAAAGGAAAACAATAAACTACTGGACCCAAGATCACAGGCGTAGCCTACTGATCAAGAATGCGCTTAATTGGAGTACACTGGCGAGGTGTCCCTTGCATCACCGCCGGGATCACGTTTTCGTAATGTTCAATACTTCGGGCGTCGATCCCACTTCCAATAAGAGAGAGGATGTTTCCGAAGTTATCAATGGCACTCTGGAGCTTTTCTATAACGTCCTGGTCACAGCTGGTCCAACAGCCATGTGGAACGATACGTGCGGGGAGACACTACTTGATTTCGGCAGTGGAGAGAAGATAATAATCGGAGTGATGTTGGCTATCATCACAGCGGTCACTGTGATGGGAAACACACTGGTTGTCATAGCGGTTTGCGTGGTGAAAAAATTAAGACAACCGTCAAACTATCTTCTTGTGTCCCTGGCTGTGGCAGACCTCTCCGTGGCCATAGTTGTCATGCCCTTTGTTATAGTGACAGACCTAACTGGAGGCAAGTGGCTTTTTGGGGAGGTGTTTTGCAACATCTTCATTGGTATGGATGTAATGTGCTGCACAGCCTCCATCATGACCCTGTGCGTGATCAGTGTTGACAGGTATCTGGGGATCACCCGCCCCCTCACATACCCAGCCAGGCAGAACGGCCAGCTGATGGCCAAGATGATCCTGGGGGTGTGGCTGGTGTCCGCCTCCATTACCCTGCCACCCTTCTGCGGCTGGGCCAAGAACGTCCACGCGGGCGGCGTGTGCCTCATCAGCCAGGACTTTGGTTACACCATCTACTCCACGGCTGTGGCCTTCTACATCCCCATGCTCGTCATGCTCTTCATGTACTACAAGATTTTCAGGGCCGCCCGCAAGAGCGGCCTCAAGCACCGCTTCACCGACTTCACCCGGCGCGAACGGCTGGAGACGGTGGCAAGCGAGGCACTGAGGATGCAAGGCCTGAAGCCGCAGGGCGTGGCCGAGGAGTGTGCGGTGCTGTCCCGTCTGCTGACCCGCGAGCGCCGCAACATCTCCATCTTCAAAAGGGAGCAGAAGGCTGCCACCACGCTGGGGGTGATCGTGGGCGTGTTCTCCATCTGCTGGTTGCCCTTCTTCATCCTGTCCACGGCCAGGCCCTTCATCTGCGGAGTGGAGTGCAGCTGTGTGCCCATCTGGCTGGAGAGGTTCCTCCTCTGGCTGGGCTACGCCAACTCCCTCATGAACCCCTTCATCTACGCCTTCTTTAACCGGGACCTGCGCTCCACCTACAAGGATCTGCTGCGATGCCGCTACCGCAACATCAACCGACGCCTGTCCGCCGTAGGTGTGCACGAGGCCCTTAAGGTGTAGGAGGAAGAGGACAATGACTAGGAGAGTTTGGGGCCCCAGAAGCATCCAAGGAATTTCTAATCCTGTCCTCATTGTAAAGACTACTGGCTGCTACTCTTTGTGATTGTATAATAGAGGCTGAGGGATGACCTGTGACCTGTGGCTGTagataaagacagagacagactgttaatacctCTCTAACACGctgtagagacacagagacaaggCCATCACttaggtctgtgtctgtctgacacacacaGTCATTCTATTTTGGGACACAAAACCATAGACCGTATTTGACGGCCTATTCAAGTTGACACTGGCTTTGTGCATATGCTACAATTCAGTCCTGACTTCATATTCATGTCAGGAAGATGATGCATTGACTTGGGAAATCACATGCGGACCCTGGCGATAATTCTAGGTCATTAAAAGCATGGGCTGCAAATGGATTTCTGCACAATGACATTTGCTAAATTAATGCTTGCGCAAGGGGTGCCATTGGCTGTTGACTTAAACCAGTGAAGGTCACGgaatctgtatctatgtaactgtTTCCAGTTCAACTTATCTGTCGTCTAGTAGGTGATGATGGTGAACAATTGAAAGTGGTCTGTATAGGAACATGTGAATCTATTATTTTTTGGAGGCAGGCAAGTGTTTAATGTTCACCAACAAAAACACTGCAAAACAGAAAGCATCCATTGTCAGTTTATTTTCAGACATGCCTTTGAATTCCTTTGGAATATAAATCGTAATGTGAATGAAGGCTAACAAACAAAAGTTAATCTTGTAATGTTACCACAAAGCACTTGAGGGTGGTAGGGATAACAAGCCTATGATTTGACGTGATTTAATGGGGAAGATGTTAGAGAGGTGGTACAACAGGtaggcctaatggttagagttGGAGAATGTTCTGGAACAAACTACATACATCTCTGAGAAATGCCCATTTACAAAATCCACAGGAATCCTCACCATTTCATTTGGCATTCATTGTTCAGTGGATTCTGCTTGAAGCTCACATCTGTCTAACATGCTATGCATTATCCATGGAAGACCAGAATGTTGTGCATAGTCAGTTTGACATAGCTCAGCAGCACAGTGGTTCATACTTCACTTCACCCTAGCACACATGTAAAACATGTAGAAggtgcccactgggcacacactggttgaatcaacattgtttccacgccATTCTAATTAAAtgatgttgaaccaacgtggagtagacattgaattgacgtctgtgcccagcggGTAATGACAGATCTTAATAATTTTCTCCAAGTTCAGTTTTCACAACACACAAACAGTTGGTTGGCTGCACGAAACAGACAGATTTTCCCTACTGATTTGATTGTGTTATAACAAAATTGTTCAACTATGATCCATTAAGGAAAGGCACTCATTGTGCTGATGAGATTCTCCCAACAAGGAATGAGTCCACCCATCAAAGTCTTTATCGCTAATGCCTGAAGCAGCAGGTGTTGCTACTTCTGCTCTCTTTCATAGCAGGATGTGGTCAAAACTTTTATGAACTCTGCATCAACTTGGTTTATTCACAACAACTCTCTTTTGTTGTaatctgtgtaaaaaaaaattgtatagtTGAAGCAGTGTGTGCTTTTCTCTACCTCGGTTTTCGGAAAATACTTGTTAATTATTATTGCAAACAGATATATTCCTGGCTTGCACTATATTTTGTCATATGATTCCTTGTTATTTAAGTGTCTAGTGTCGACGGCATTCATTGACATACCCTTCTACAACTGCTTTGTGAACGTTATTCTCCAAAATGTACCTGGAGAAATTAGagtatatttctttcatcactttgTAAATAAAGCAGCACTTGGTTTAAA

Function

GO: NA

KEGG:

id description
K04163 HTR7; 5-hydroxytryptamine receptor 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU567157 lncRNA upstream 46339 34329491 ~ 34329812 (+) True G499225
TU567156 lncRNA upstream 47066 34328882 ~ 34329085 (+) True G499224
TU567131 lncRNA upstream 71043 34303253 ~ 34305108 (+) True G499207
TU567125 lncRNA upstream 90834 34284607 ~ 34285317 (+) True G499201
TU567110 lncRNA upstream 124463 34249829 ~ 34251688 (+) True G499186
TU567193 lncRNA downstream 47676 34462364 ~ 34462623 (+) True G499261
TU567249 lncRNA downstream 53512 34468200 ~ 34468478 (+) True G499316
TU567448 lncRNA downstream 62064 34476752 ~ 34476987 (+) True G499505
TU567452 lncRNA downstream 65123 34479811 ~ 34480176 (+) True G499509
TU567468 lncRNA downstream 75327 34490015 ~ 34490230 (+) True G499525
XM_021606284.2 mRNA upstream 77752 34292777 ~ 34298399 (+) True LOC110525834
XR_002473696.2 mRNA upstream 97270 34277225 ~ 34278881 (+) True LOC110525024
XM_021606280.2 mRNA upstream 402364 33970403 ~ 33973787 (+) False fahd2a
XM_021606281.2 mRNA upstream 402364 33970404 ~ 33973787 (+) True fahd2a
XM_021606264.2 mRNA upstream 609671 33756104 ~ 33766480 (+) True LOC110525824
XR_005052074.1 mRNA downstream 174855 34589543 ~ 34594418 (+) True LOC118964863
XM_036979972.1 mRNA downstream 370297 34784985 ~ 35201448 (+) False LOC110525840
XM_036979971.1 mRNA downstream 370298 34784986 ~ 35201448 (+) False LOC110525840
XM_036979973.1 mRNA downstream 370299 34784987 ~ 35201448 (+) False LOC110525840
XM_036979974.1 mRNA downstream 370299 34784987 ~ 35201448 (+) False LOC110525840
TU567034 other upstream 224414 34151140 ~ 34151737 (+) True G499111
TU565715 other upstream 911096 33461635 ~ 33465055 (+) True LOC110525816
TU565692 other upstream 1055803 33317637 ~ 33320348 (+) True c6h22orf39
TU565528 other upstream 1211890 33154691 ~ 33164261 (+) True LOC110525799
TU565537 other upstream 1226153 33146467 ~ 33149998 (+) False LOC110525799
TU573608 other downstream 4855271 39269959 ~ 39311874 (+) True fancc
TU574234 other downstream 5259324 39674012 ~ 39678263 (+) False LOC110525927
TU574235 other downstream 5259324 39674012 ~ 39678263 (+) False LOC110525927
TU574236 other downstream 5259324 39674012 ~ 39680031 (+) False LOC110525927
TU574237 other downstream 5259324 39674012 ~ 39680031 (+) True LOC110525927

Expression Profile