RNA id: XM_036979973.1


Basic Information

Item Value
RNA id XM_036979973.1
length 6379
RNA type mRNA
GC content 0.53
exon number 20
gene id LOC110525840
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 34784985 ~ 35201448 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACATGGACCCGTAGGCTGCGACAGACGTATTTGTAGCCAGACAAATTACACAAAAGGAATGCGAATATTGTAGCCTATGCCTCATCACAAAGTTACTGTGCGGAATTTAaaagtaggcctaggctatataTAAACTAGCTCACTTCCTTTGGgtaatttgcagagctggcggaAGTAGCCTACGTCAGTTATCTCGGCTCTCTGAGGCTTTTATTGCACACTAATTTCAGATGTAGGGAAAAGAGGGGAGAGTAGATTTGAATCACCCCTGTCGCTTTAAGGACACTTATCAAAGCTTTGCATATATGCGAAAGGGAAAAATACGATGAGCCACGAGCAACTGAGCAACCAAGGACGGAATACAGGAGTGGATTGATGTTTAATAACTTACACGGGCCTGGAATAGCCGATGCCTTTGCCTTATGGGGTTTGATCATATACAGTGGATTGTCGTATGCTGAAGTCGCTAAACGGAGGATCATTTGGAAAATATTGCGCATAAGTAGCGAGAGATTTGGAGATCCCTGCCCTCGTGGATTTTATCGCGCAAAGGTTTAGCCCTACGGTGGAACTTGTCAGATGAATATGGTTAACCGTTGAAACACGCTAATAGCCTACAGAGAGGATTATCAACTTATGTAGCCTATTATCTTATCCATTATTGATAAGCACCTAATGCGCATTTTGACGGATATTATCTAGACTCTTTTTTTGACAGCGGATCATGGATTGGGTGGTGGAAAACAACGGGCAGCGACATGATTTCTCTGCGCTGTCTGCGGTATTCAGCTATTAACATTGTGTTATTCCAATGCAACAAAGTTGCAAAGGAAGTGGAGTGCATAAATTGTAACTATTTCGCTGTTTTGCACCTGCTTATGTGAAGAACGCGTCGACGTTACAGTATCTAGTCGCTTAAAATACGTGAGGATTTGCATCGCTTCTTCCTCGCCCGCATGGAATATTTGAACATTTGTTTATTGTATTAGGGAGGTTTATATTCAAGGTCATTCCGAGAATCTGATTACTTATAGATGTATTATTTATACATCCGTATCTACTAGTGATAACACTATAGTTTATTATTTCGGTTGGCCGCACAGGGAATCCGCTTTACGTTAGGTGATTTATAGTGATTTTGTCATTGCAACATTTCTAAAATGGATGGAAAATTGAAGCAGAGCCGGAGATCCCGTTCCAAACGTGAGAGGGTACGGAGACGGGAGGCAGTGGGCAAGGATGCCCGCAGTCCGAAACCTTCGTCTTGTTCAGATAGGGAGCAAAGTCCTGGGAGGGATCTCGTCTCCCAGAATGGTAAAAAGTCTCCACACTCAACACCCTCTGCCAGAACCTCGCGCCCCCCTCGTCGAAAGAGACGAGAATCCAGTTCTCAAGAAGAGGATATCATTGATGAATTTGCCATTGCCAGTTTCGTCAGCCTGGACTGTCTGGAGAAGAAAACTGGGGCCCTGAAGTCTCAGGAgcggaaggagaaggagaggtggagagaggagaagcagCAGGAGACGGTGGTGAAGAGacagaagaaggaggaggaggaggaggagaacgtcATGCCCACGTCTCTGGACCCCCTGGAGAATGGCTTCATCAACCACGcccagagagagcaggagaggatgaaCGACAGACTGCTGAAGAAAACCTACTCCAAGAAGAACAAACAGaTCAAGGCCCTGCAGGTACGCCCAGTGAAGCTGGATGAGGATGGGGCCATGCAAGAGTTCAACAGACCCAACAGGAGCATCTCTAAAGAGCACCTCAGTGAGagctCCACTCACTCGCTGTCAGGCCGGGGCTACTCGTTCACTTCTTTAAAAAGAGACGAGCACCCGTTTGGGAGACATGAGTGTGACAGCGAGAGTGACGTTGATGACAAGGTATCTGATGTAGGATCCGAGAAACTATTTTCCCCCACTACACCCAAAGGTGTGTCAACGAATGAGAATCCCGAGTCCAAGACTGTCAGCTCGGCCAAAGTCTCTGGGCTCCAGCGTAGCCAGGAGCAGAGTAACGAGGTGTCCTTCGCCCCGCCCGTGTCCAGCCCCACCCCGGCCTCCCCGCCTTCGGGCTCCCCTGCCCCTGCTGCCACTGCGGCAGGCCCCCCTCAGCCCCTCCCCAAGGCGCAGCTCACCTCCCCGCCCCCCCTCCTCATCAAGAGAGAGTCAGATCGGGTGCCGCCCATCCCCAGATTCCCCACCCCTCCCCTGCTGAGGGCCCAGCCCCACCCTCTCCAGGAGCACCGGGTCCCCGTCTCGCTCCCTCCCCCCCAGCACCAACACCACGCCAGGCCTCTCATCAGCCACCAAGTGCACCAGCATCACCCGCTGCATTACAACAGCCTGCACGACATCAGCGGCGGCAGTGCAGGCCTCCCCAAACACCACCACCTGcccccctctccccaccaccTGAGtggcctcccctcctccaccccggCCCTGCCCCTGTCCATAGCCAACCTTTCGACCTCGCACTATTCCTCCCTGCGAAGCCCGGCCCATCGCCATCCGGCCATGTTCGCAACCCCCGCCACACTTCCGCCACCTCCGACCTTACCCACCAACAGCCTTGTGGTCCCTGGGCACCCCGCTGGCACCCCCTACCCAGAGCATGACCTCCTGCGGCAGGAGCTGAATAACCGCTTCCTGGTTCAGAGTTCAGAGGGGCGGAGCCGGGGGCCGTCCTCCGCGGGGTCCCCGCTGGCCCCTGTGTCACTCCTGAGGGGAGCGTTTCACCAACACCAGCACATGCATCAGCACCAACACACCCACCAGCACACCTTCACGCCCTTCCCGCCCAGTCTGCCCCCGGCCGCCATCATTACTCCGCCCACCGCACCCCCCATGGTGCGAACCCCAGCCAGAAATTTCGACAAATACGCTCCAAAACTGGACAGTCCATTCATTAGACATTCAAATTTCTTCCCCTCCTACCCCCCCACAATGCCAGGCATGCCCCCGCTGCTCCCCCACTCAGGACCCTTCAGCTCACTGCAAGGAGCCTTCCAGCCCAAGTCCTCCAACCCCATAGACGTAGCCTCCCGCCCGGGGGCAGTACCTCACACACTCCTACAGAAGGACCCACGGGTATCAGATCCTTTCAGGACATCAGTCAGAAAACCTGGCAAGTGGTGTGCGGTGCACGTCCAGATCGCCTGGCAGATCTACCACCATCAGCAGAAGATGAAGCAGATGCAGGTAGACCCTCACAAACTGGACATGAATGGAAAGCTGGACCTGTTCAGCCGTCCCCCCGCCCCAGGGGTGTTTCCTGGGTTCCCCTACACCCACGACCTGGCACGACCCATGTTCTCCTCCACAGgTTCTGGCCATCCGGCCGCCTCCCCGTACGGCCCCTCCCCCCACCACAGTGGCTTCCTGCCTCCCAGCCACTTGGCAGATCCTTTCAGTCGCTCCAGTACCTTTGGCGGCCTCGGCAACCTTTCAACCAGTGCCTTCGGAGGATTAGGCAACCCCTCGCTTGGCTCCAACAGTATCTTTGGCCATAAAGAAGGCCCCGGGGGCCTGCCAGGCTTCGGCAGCCCCCACCACGATACCTGGAACAGGCTCCACCGGACCCCACCCTCCTTCCCCACCCCGCCGCAGTGGCCCAAGTCTGCAGACGCGGAGCGCAGCAACTCAGTCAACAGccacgagcgagagagagaacgagagagggaacgggagagggagagagaacgggagagagaacgggagaaaaGGGATTCATCCATCAGCAAGGAGGAGAAGGATAAAGACAGAGATTCGATTGACCGTAACCGTCACTCGAACCGTTCCTCCCCTGCGTCGGCCCAAACCAGCTACCAGATCAGCAGCCTGATCCGCTCTAACAGCCAGAACTCCAGTGACTCTGGTCGCCACCACAGCGCCAGTGTGGATCGGGTCCGGGAGGCCGAGAAGGAGCTCCTGGAGCGCCACCGAGAGGCAGCCATTCTGGGGGACGTCAAGGTGAAGGAGAGCCGCTCccctggaggagggaaggaggtgtcagacagagacagacgctCGTCAGAGGACCCCATCAAACCAGCCCACCGCACGCCCTCTCCCTACCCCAAGGCTGTCCTATCTGAGACAGGAATGAAGATGGCTGGTGGTCCCCCACCCACTCTACTCAAggacggggacagggacaggaaggAAGGTCCTCCGTCTTCTGGGGGGGACCTGCTGCTGCACAAGGTGAAGAACGACATGAAGATCAAGGAGGAGCGCAAAGAGGACcaggaggtgatggtggtgagCTCCGAGCCTGCCACTcagcctgctcctcctcctcagcctctacctcctccacctccccagcccggtcaccaccaccaccaccaccaccaccctcctctGTCCCAGCagcctcctcccccctccccacgcTGCAGTGACTTGCCCACCCACGGCTCCCTGCATGGGGTGCACATGGCCCACTCCCTGCCCCTCTCCATGAGCGCCATGCACCAGATGGGCAGTCTCAACGTGCTGGACCGGGCCCGCATGGCTCCCTTTATGGGGGTGAGCCCCCTGGCTGCTGCTGCAGGGAGGGACCGGATGCCCCACCAAGCCTTCCCTTGGGACCCACTGAGGGAGGCCTACCGCAACCTGGACCTGCAGCGCAGGATGGACTTTCAGCTGAGGGCTGAGCAGGCCCAGCGCTTCCCCAGCATGTACGAGCAGGAGCGGGCTTTCCGGGAGAGAGAGGCCCACGACTACTCCCACCATGAGCACATGCTGGAGGTACGGCGGGAGCACGAGAGGATGAGGCAACAGGCAGAGGAAAGAGAGCGCCAGCACCTGAGGGAGGAGCTGGACCGAGCACGGCTCCACCAGCTGCACCAGTCCCCCATGGAGGGACACCTGCCACACATGCCCCCCTTCATGCCCCACCTGGGCGGCATGCCCTACCCCAGACTCAGCCCCTCCACCGGACACAACGGCCTGCTAAACCGGACGCCCCCCACTGCTGCCCttagcgcccccccccccctagtgcCTGCAGGCAGCACCAGAGCAGCCTCCCCCAGAAGGACTACCCCCCACAACACCCAGGACCCCCGAGATTACTCCCCCTCCCGCAACCCCAAAGAAGTGGAGGCACGGTAGCTTGACATAACAGGCAAAGGACGTGAATGCTTAAAAAGGCGCACTCCCCAATTTAGAACCTTCTAGAGAGAACAAGATGCACTGCTTTTCAATGGAGAAAGGCATAAGTAAAAGAGAAAACAGTATGATTGTACAAAGTAAAGATTTGTAAGGGTGAAGAAGCACATGCCATGCTTTTATTTTATATGGACAGGCTGATGAGAATGTTGGTTAGAAGAACACAAAAAGTATGTGTATGTTAGTTGCCGACTTAAAATTTGATATTAATATATTAATCCAATACCTTTTGTCGATTTTTCTGTGAAAAGTGAGATTCTGATTGAAAAGAGAGATTCTGATTGAAATTAGTTTGTACATTTCCTATCCTTGTTCCATGTATAGACATCATTTTTATGAATTTGTATTTTGTGCATTAGTCCATTTTTTTTCAATATTTATCCCAGTCCATTGTGAGACATATCAAGGATGATGCTCCAGAGTGGATGATGCTCCACAGTGGATGGGAGTGGATGATGCTCCACAGTGGATGATGCTCCACAGTTTTTACCCAGTAATTTAACCTCATGGTACCTGAAAATACTCATAAATGATCATGTACAAAGTTACATTAAAGATTTGTTGCATTTTATTTGTTTTGCCTTTGAGATATGCAGACAAATATATATTACGAGGTCTTTGTTCGGTCTCTGTAAAGAAGaattagtgtaaaaaaaaaatgacaatgtAAATTTATTAGGCTTTTTAAATGTTTCTAGAAAAACAAATGAAATCAAAACAGAACCACTTCCCGGTTGTAAACCATGGTAACAGACGAGCCTGTCcaatgggagggaaggagggcgggCATCAGAAGGGGGCCTGGAATGATCTTCTGCAATCTATGCAAAGAGTCACTGAGCACCCCGATGGAGAGCCACCTGGAATGGAATGGACTGTTGGATAATGTTGATTCTGTGAGAGGAACTTGGATTAACTCAACATGTTTTATTTTCCAATCATGGGACATGGAATTAAACCTACAGACTTCCTGGTTACAGATAAGAAGAAGCTTACATACAGCCCCAGTGACAGCAAAGGAAGACACGTTTGATTGGGCGGCAATAGGACTTTCTCTGTCGACCGTTGTGGTGTTGTGCAGTTGTTTTTCTTAGACTTGTATACAAAACAAGTAGAGTTTTAGGCGTGCAAAAAAATGAAAACGAACATTCATGTACGGAATAAAGTTTGGACCTAATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU567705 lncRNA upstream 125570 34652646 ~ 34659417 (+) True G499751
TU567545 lncRNA upstream 242774 34541777 ~ 34542213 (+) True G499598
TU567505 lncRNA upstream 273554 34510844 ~ 34511433 (+) True G499558
TU567495 lncRNA upstream 281158 34503601 ~ 34503829 (+) True G499548
TU567468 lncRNA upstream 294757 34490015 ~ 34490230 (+) True G499525
TU568062 lncRNA downstream 784 35202232 ~ 35202434 (+) True G500086
TU568067 lncRNA downstream 7681 35209129 ~ 35209391 (+) True G500091
TU568113 lncRNA downstream 214860 35416308 ~ 35416943 (+) False G500121
TU568114 lncRNA downstream 214860 35416308 ~ 35417008 (+) False G500121
TU568115 lncRNA downstream 214860 35416308 ~ 35416802 (+) True G500121
XR_005052074.1 mRNA upstream 190569 34589543 ~ 34594418 (+) True LOC118964863
XM_021606289.2 mRNA upstream 370299 34376151 ~ 34414688 (+) True LOC110525837
XM_021606284.2 mRNA upstream 486588 34292777 ~ 34298399 (+) True LOC110525834
XR_002473696.2 mRNA upstream 506106 34277225 ~ 34278881 (+) True LOC110525024
XM_021606281.2 mRNA upstream 811200 33970404 ~ 33973787 (+) True fahd2a
XM_021606294.2 mRNA downstream 33120 35234568 ~ 35245606 (+) False LOC110525841
XM_021606295.2 mRNA downstream 33120 35234568 ~ 35245606 (+) False LOC110525841
XM_021606296.2 mRNA downstream 33120 35234568 ~ 35245606 (+) True LOC110525841
XM_021606297.2 mRNA downstream 85618 35287066 ~ 35306444 (+) False LOC110525843
XM_021606298.2 mRNA downstream 85618 35287066 ~ 35306444 (+) True LOC110525843
TU567034 other upstream 633250 34151140 ~ 34151737 (+) True G499111
TU565715 other upstream 1319932 33461635 ~ 33465055 (+) True LOC110525816
TU565692 other upstream 1464639 33317637 ~ 33320348 (+) True c6h22orf39
TU565528 other upstream 1620726 33154691 ~ 33164261 (+) True LOC110525799
TU565537 other upstream 1634989 33146467 ~ 33149998 (+) False LOC110525799
TU573608 other downstream 4068511 39269959 ~ 39311874 (+) True fancc
TU574234 other downstream 4472564 39674012 ~ 39678263 (+) False LOC110525927
TU574235 other downstream 4472564 39674012 ~ 39678263 (+) False LOC110525927
TU574236 other downstream 4472564 39674012 ~ 39680031 (+) False LOC110525927
TU574237 other downstream 4472564 39674012 ~ 39680031 (+) True LOC110525927

Expression Profile