RNA id: XM_036980049.1


Basic Information

Item Value
RNA id XM_036980049.1
length 4163
RNA type mRNA
GC content 0.51
exon number 27
gene id LOC110525875
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 36951506 ~ 36969236 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATTCTTGTCAATGTAGGGTTATCAGAGTTTGTAGCTAAATACTTCATATCTTGTAGTGATGTGGGACTTAAAATTAGTCTTTTAGCCACATAATCCTATTCgagctagctaaattagctatTTCTGTATAATAGCCAGCTAACTatcgttagctaactagctaacgttttTAGCCTACCGTAACGTTAGTTAGCCATTATGTcgttcacaaaaacatacaaattgGCATCTGCTGATTAGGGAGTTTACTGACacttgtatgtaatgtaatggttTATTTTCTTTACCAATGATATGCCATCATAGGGATACCACAATGTAACTGACAGCTAGCTAGTAGATGGAACAACCATTCAATCCACTAAAACACAGGCCAAGTTAGACTAACACATTTTTCTTGGCCTCAAAAGGAAATGTAAACCTGATGGTGACTGCCTCCATTTACACCTACACCACCCCGCCCACCTTTGCTCCACACATTTATTGACACATCCCCATGGCCATGAAGATCCCCCACACTTACCCTCCCATTTCCCACACCCACTGCCTCTACCGGGGGCACAGGCTGTGGTgggccttcctcctctcctccctgtctgtcttcctgggGGGCCTGCTGGCCCTACTGCTCTGGAAGGTTGCTCACAGAGGGTTCAATAGCATTGGGATTTTCAGACCCCGACGACAGCGCTGGGCACACAGACAGAGCATTAGTGTGCAGACAGATTTCAATCTGAGGAATGCCTTGAAGGAATGGGCGTTCTCTGTGATATCGGCTCAACATCTGCCTGGCAAAGTCCTAATGGTGCTGATATTCTGTTTCAACATCGGCTCCATCGTGACCTATATCATCCTCTCTACTGACCCAGTAGAGTCCTGCATGAAAGAATACAGCATAGCTTTCCTCATTGATTTGGGCTTCAACATCTGCCACCTTCTGTATTTTGGGCTCAGGTTTTTGGCGGCCCAGGATAAGCTGATGGTTTGGGTTGACTTGAGATCCCTGGTGGATTTTTTCACCATTGCTCCTTCCTTTGTTACCCTGTTTTCCCGTCGATCCTGGCTGGGTCTGAGGTTCATCAGAGCTCTGCACATACTGGAGTTACCAGTGGTTCTGCAGATTCTCAACGTTTTCAACAGCAACAGCACCACTCTGAAACTCTCCCGCCTGGTTGCCATCCTAACAGGCACACTGCTGACCTCAGCTGGTTTCATCCACCTGCTGGAGAACTCAGGTGACCCCTGGCTGGACTTCTCCAACCCCCAACCTCTCCACTACTTTGAGTGTGTTTACTTCCTGGTTGTTACCATGTCAACGGTGGGCTATGGTGACGTGGAGTTGAGGACGACCCTGGGACGCCTCTTCGTCATCATCTTCATCTTTATTGGACTGggtCTGTTTGCCAACTTTGTCCCAGAGGTGGTTCACATCATCATCAACAGGAAGAGGTTTGATGGAAGCTTCACGGGTGTCTCAGGCAAGACCCATGTGGTGGTGTGTGGTCACATCACTCTGAGCAGCGCCTCTGCCTTCATGAAAGATTTTCTACACGAGGACAGGGGAGAGGTCGACGTCAAGGTGCTCTTCCTGGGAAACTTCCGTCCTAACCAGGAGCTGGAGGCTTTCTTCCTGAGGTGGTTCCTGAAGGTCACCTTCTACCAGGGCTCAGTGATGCagaggagagacatggagagagttAAGATGCATAAAGCAGGAGCTTGCCTGATCATCTGTGACAGGTTCACCTCAGACCAGCATAAGGAGGACGCTGCCAATCTCATGAGGGTGATCTCCATCAAACAGTATTGTCCCAACACCAGGATTATAGTTCAGATGTTGAAGCACAACAGTAAGGCGTTCCTGCAGAACGTGCCTAACTGGGACTGGAGTCGAGGTGATGCAGTGATCTGCCTGGCAGAGCTCAAACTGGGTTTCATGTCTCAGAGCTGCCTTGTGCCTGGCCTCTCCACGCTGTTGACCAACCTGTTCACCATGCAGAGTGAGATCGAGCAGGACGGAGACACCTGGCAGAACCTGTACAGAGAGGGCCTCTACAATGAGATCTACACAGAGCACCTGTCCCCCTCCTTCATAGGGATGTCCTTTGCTCAGGCCAGCAAgCTATGTTTCCTGAAGCTGAGGTTGCTGTTGATTGGGATTGAGTATCAGAGCGGAGACCAAGATTTTAATGTGTTGGTGAATCCTCCCAgtcacatcaaaataaagctgtGGACTCTGGGTTTCCTCATAGCCAGCAATGCCAGTGATGCCAGAAGGGCGAGTATGTACTGCTCTGTGTGTCACAGAGACATCAAGGATTTGCCCAGGATGAGACCCTGCAGGTGCACTGAGCAGAAAGATGTCTCATCTAACACCTCCGCCATGAGTCTAGGCTTCAGACGTCCATCACTGGGAGTTCTGCCCTTCAGCCCAGAGGGAGAGACTCTtcgagagagggagtgtgtgtgggagcagcagcagcaggaggagcagcaggaggtGAGGCTGGACTCTACAGGACTGTTCCACTGGTGCCCACCTGTTCCCCTGAAGGACATCTCACTGACCAGACAGAGTGCCAGTACCCTGGCACTGCAGGACCACGTGGTGGTGTGTGTCTTTGGGGATGGGGGATCCAGCCTGCTGGGCCTGGGGGACTTCATGATGCCGCTGAGGGCCAGCAGCCTAACGGCCCCAGAGCTGAGGACGGTCGTCTTCCTGGGAGACCCACACTACTTCAGCAGGGAGTGGCCCAACATACAATACTTCCCCCACATCTACTTCCTGCCTgGCTCTCCTCTGTGTGGGGCAGACCTGCGTGCGTTGAGGGTGGAGCGCTGTGCCATGGTGGTGGTCCTCAGCTCTCTGTCCAGCTCCAGCGACATTGAGCCCTCCATGCAGGATAAGGAGACCATCCACTTCTGTGTCAACCTCTACCACATCCGCTTCAGCCCCGAACTAGGCCCACGCTGCACACTCAGTCACACTCAAAGTCACGGCCACGGACAGGGGCTGGAGCTTGGTCATGGGTTTGGTGGTCATAACCATGGTCTGAGCCACGaCACACTAGACTTTTCCCACATCCCTACGATACCCGAGAAGGCTGAGGTCACCCCTGCTCACAGTGCCGGCACCACTGTCCCTCTGCTGGTAGAGCTGGTGAACAGCTCTAACGTGTGCTTTGTGAACGAGGCGGACAGCCAAGAGGACTCCTCCAGCCTGACCCTGAGCCAGGCCTTCTCTGTAGGCTCCGTCTTCTCTGTCGACCTACTGGACTCTCTCATGGCAGCCACGTACTTCAACGCCAACGTGCCTGGTCTGATCTGTACGCTGGTGACGGGTGGCGACACCCCCTTACTGGAGGCCCAGCTGGCAGAGGACAACCAGCTGCGGGGAGGGGAGATGTCCGTGAAGATGTGGGCGCTGCGCCAACGCTCCAAactggcacagctggcactgcaggatGAGCCTCTCTGCAGCCTCGCTTGTGAGGACTTCAAGGAGTTGTTCTGCCAGGCTCTGGACTCGTTGGAGATCCTGTGTTTTGGGCTGTATCGCCTGCTGGACCCACCTAACCCCTCCATGAAGAGGTTTGTAATCACCAACCCGTCAGCAGAGCTCCCGTTGTTGCCTTCAGACAGAGTCTTCTGCTCTGTACCCTTCCACCAGAGTCACCTGCTCACCCTGAGGAGAGCCAAGACCATCAGTCACCGCCTATGAACCTCCCCTACACCCCCGCCCTCTGCTTGGACACCACAAGATGAATGACTCCAAACGGAACACTATCAATTTGATTTACGTAAATCTCTTTAGAAAGTCTTTATACATCTTTGAATGGAAATTCTTCCACCCAACCACAGCAAAGCACACGCGCAggcaaacacacaacacactgggagtgccttgctcaagggcacaatggtGGTAGTTTAGGAGAGAGATGATTTACAACCTGTATTGTGAGTGTTTCTTCTATACTGTACTGGTTATGAATATCAATGCCGTACAGTAGGAGACATGACAGTGTTTGACATTGGCTATTATTGTTTGCATAGGGTTAGACATGTTTTTATAATGTAGCTTTAGGTTGACATGTATGGTTTATTATTCCTATACTgttatttttaataaaaaaataaaacatacattttatttaacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU570723 lncRNA downstream 19154 36932097 ~ 36932352 (-) True G502530
TU570722 lncRNA downstream 19692 36931311 ~ 36931814 (-) True G502529
TU570720 lncRNA downstream 24333 36926931 ~ 36927173 (-) True G502527
TU570719 lncRNA downstream 24914 36926288 ~ 36926592 (-) True G502526
TU570717 lncRNA downstream 26516 36924776 ~ 36924990 (-) True G502524
TU570755 lncRNA upstream 46210 37015347 ~ 37018829 (-) True G502562
TU570788 lncRNA upstream 110281 37079418 ~ 37079622 (-) True G502591
TU570790 lncRNA upstream 114782 37083919 ~ 37084236 (-) True G502593
TU570795 lncRNA upstream 121726 37090863 ~ 37091122 (-) True G502598
TU570807 lncRNA upstream 133869 37103006 ~ 37103337 (-) True G502610
XM_036981744.1 mRNA downstream 93274 36854388 ~ 36858232 (-) True LOC118965024
XM_021606353.2 mRNA downstream 170683 36776871 ~ 36780823 (-) True LOC110525874
XM_036980047.1 mRNA downstream 187409 36755694 ~ 36764097 (-) False LOC110525872
XM_021606355.2 mRNA upstream 931 36970068 ~ 36987765 (-) True LOC110525876
trnag-ccc-2 mRNA upstream 18888 36988025 ~ 36988095 (-) True trnag-ccc-2
NM_001160626.1 mRNA upstream 68302 37037439 ~ 37047277 (-) True vamp5
XM_021606360.2 mRNA upstream 81564 37050701 ~ 37065023 (-) False vamp8
XM_021606361.2 mRNA upstream 81564 37050701 ~ 37065030 (-) False vamp8
TU570258 other downstream 434238 36508056 ~ 36517268 (-) True hk2
TU569190 other downstream 1183577 35765366 ~ 35767929 (-) True G501142
TU566881 other downstream 2910332 34040359 ~ 34041174 (-) True G498960
TU566347 other downstream 3614726 33332650 ~ 33336780 (-) True LOC110525812
TU566350 other downstream 3621002 33327507 ~ 33330504 (-) True G498484
TU570775 other upstream 81566 37050703 ~ 37064989 (-) True vamp8
TU571292 other upstream 270707 37239844 ~ 37240937 (-) True G503064
TU571387 other upstream 362347 37331484 ~ 37336552 (-) False G503159
TU573476 other upstream 1985733 38954870 ~ 38967403 (-) True nsmfb
TU573890 other upstream 2236741 39205878 ~ 39206269 (-) True G505472

Expression Profile