RNA id: XM_021606373.2


Basic Information

Item Value
RNA id XM_021606373.2
length 4596
RNA type mRNA
GC content 0.45
exon number 22
gene id LOC110525887
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 37468758 ~ 37482116 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTGGACTGCAGTGATTCACTTGGCATGAGAGCCTGAGGTATTATGAGGAGAGATTGCCCTCTTGTGGTGCTATATTTTCCTCacaattttgtatttattttactctCAAAGGTTAGTTTCTCCTAACAGACAAAAACAGCTTACCGGAGGCCAGGACTCACATgagtaaaataatataataacattAAGATGACTCAGTGATTGGTCAGTGTGGAAAGTGGTGAATATTGCTTACATGTAATTGAAATGTTCTGTTTAAATGTGTACGATGTTTTGAAAAATATATCGAGATAGataccaaatcaaatgttatttgtcatacgcgacaaatatatatattctcaTTGTACCCTTAGTCACAACATTACAGAGATTAACTAAGTAAATACATGTGTTCATACAGTACTTttcactttatagtgcactaccggtcaaaagtagtgtactttataggtaatagggtgccatttgggaaacacagGCACTGTAGCAAGTCGTGTGTACACTAGCTATGACTAACAGGAAGTGGCCACGAACACCACCGTGCCATGAAAAACAAACTCCATCACTGACAGGCTGGGGCCGCCCAATAAGGTGTGGCCTGTAGATGGTATCACATGAGCATGCAACCAGGTAACCCATTAAACCCCTCAGACCATCACTTGTGTTTCAGTAGCTGTCTGCACTTCGACAATGACACATACACGTCTATTGTGGATCTTTACCCTAACTGCCTCCCTCAATCTCTCAGTGAGTCATGGTCCTCTTGAAGGAGTGAGGGACTATGAGGTAGTCCGACCCATCAGACTACATACTCTGCGGAAAAGAGAAACCGAGTCATCCAGGCCAGAAACTTTGAAGTATGCAATGAGAGTGGGTGGGAGAGACATTGAGATGCATCTGGAGAAGAATAGGGAATTACTCACGAAAGACTATAGTGAGACTTACTACACTGAGGATGGCACACCAGTCACCTCTACGCCTCAGGATATGGATCACTGCTACTATCACGGTAGTATTGTGGATGACAGTGAGTCTATGGTCAGCATGAGCACCTGCGATGGACTCAGTGGATATTTCAGAACGGCCGCCCAAAGGTACCTGATTGAGCCCCTGTCAGGGGGGGATGATGGGGATCACGCAGTGCTAAAATACGAGGACCAGAGCTCCAAGCCTATGCTGTGTGGAGTCACTAATTCTACCTGGAACGAAGACTACCCTTCCATTACTAGCAGGAGCCGTTCTCGAGCCTCAGGTCCATCTATACTTCAACAGCAAAAATATGTTGAGCTTGTCCTCGTTGCAGACAACCGTGAGTACAAGAAGATGGAGAGTAATCGGGGAGAGCTGCGTAAGAGGATATTTGAAGTGGTTAACTTTGTCAACATGGTGTATAAGCCCCTCAACACCTTTATTGCCCTGGTTGGTCTGGAGGTGTGGTCAGACAGTGATAAGATATCAGTGACCGCCCCTGCTGGCGCCACCCTGGACGCCTTTACCACGTGGAGGAACAACGACTTGGTCAAGACTAAGCCCCACGACAACGCGCACCTCATCAGTGGCATTGACTTTGAGGGATCGACGGTGGGTCTGGCCTTTATCGGGACTCTATGTTCAGGTCATTCTGCTGGGGTGGTGCAGGATCACAACCCCAGGGCCATAGCTGTGGGGGCCACATTGGCCCACGAGATGGGCCACAACCTGGGCATGAACCACGATGACTCCAGTGCCTGTGCTTGTTCTGGGAATAGCTGTGTAATGGCTGGGGCCCTCAGCTGGGATATCCCAAAGTCATTCAGTAGCTGCAGTAGTTTGAGCTATGACCAGTTCCTGAATAATCGTAACCCTGAGTGCCTACTGAACAAGCCAGACTACCGAAATGTGGAATCAACCCCAGTGTGTGGGAATGGCtttctggagagaggagaggagtgtgattGTGGCTCCCTGGAGGAGTGTACAAACCCTTGCTGTAATTCCACCAGCTGCACACTGACCAAAGGCTCAGAATGTGCTGCAGGAGAGTGCTGTGAAGACTGTAAGATCATGGCCTCGTCCACAGAGTGCAGAAGGAAACATGACGACTGTGACCTAGCGGAGTACTGCACAGGGAATTCAGCCGTCTGTCCTGAGGACGTCTTCTCTGTCAATGGGATCTCCTGTGACAGAGGGAGGGGCTACTGCCGCAACGGCCAGTGTCCACAGCATCATGACcagtgtgtgaaaatgtatgGCCCATCTGCTGAAAAGGCCACAACGTACTGCTATAACCAGAACACCAGAGGACTGTACTATGCCTACTGCAGACGGCCTTCACAGGACCAGTTCATCCCCTGCCAGAGCCAAGATGTGCAGTGCGGGAAACTCTTCTGCAAGAACGGTAATGATGACCCCAACTATGGTCGCATGGTGAAATTCTCCGACTGCAAAGCCACATTCTACGGTGATCACACCAGTGACTTTGGACAGGTGAACACGGGGACCAAGTGTAATGATGGGAAGGTGTGCAGCAAGAACGAGTGTGTGGATCTTGAGACAGCCTACGGACCCAAAGCCACCAACTGCTCAGCACGGTGCAAAGGACATGCTGTGTGTAATCACAGAATGGAGTGCCAGTGTGAACCTGGATGGTCACTTCCAGGCTGTGATACAAAGGATGGAAGCTTCACGGGCCTCTCCAGAGAAGGAGTGATTGGCATTGCGGTGACAGTCTCTCTGCTGCTTCTGGCTGCTATTGCTGGGGCAGTGGCTGTGTTCCTAAAGAAGAGACGACAGTCCCCCACTCTGCCTAGCCACCATACCCAGAAGAAAATCCATGAAGTGGACAACCACATCCATAAACTGCCAATTCCCAGCCAAAATAAAGCTATGCCACAGCAGCCCAAGCGACCAAAAGTAGCTCCGcccccaccccctccagctgCTAACCAATCACAAGTCCCGGTCTATGACTTCAGGGCCGCACGACAGgctctgagaccaccaccaccacgtGTCTGATGTCAACATCTAAAGGAGAAGAGTGGAAACATGAGGAACTCAACCCTTACCAAGACCTCAAATGCAGGGCCACAACTGCTAGGCCAGCCAGTGCAGTCAGTCCAGAGACCTCACTTCTTTGGGATAATTTTACAGAACCCTAGACTAGAGACAAGTTGGCTCTGCCACCACTTCTGAAAAAGCCTTGTCCCAGATCTCTTTGTGCTCTGGCCAACTCCATTGCTCAttgtttggcatgacaacgaGTGACAAGGAATTagcatgatggcacaaacagactggcactcaggctacctATGAAGCCCAAGGAATGTGTTTGTGCCAATGATGTGCATGATGGGTGAACTCAGTATAGTCACAAATATGGAATGGACTGAGGAGTCCTCTTTACGAGGAACGTCTTAAAAAATGACACTTTTTAGTATTCATTTTATACCTGTAATTTATTTGTCACTGCCATGTCAGGGAGTGAGTGTTCAGTATGTGATAATATGCCATTTATTTTCATACTATTACATTTATCAATGGTGACTGTATATTCCTGACTTTGGCTGAGTACTGAGTCTACagtaaatattttttattaattcaAAGATTTACTGAGCACAGCCATTGCTGACTAAAGttctgtatataaaaaaaaaatacacatgcTCAATACTGATAAAGTAACTCAATTTTAGATTTAGGAATTCTAGTGAGCAAGAatttacagatttttttttatagaacATTCTTAAATGCTGCACAACTAACTGCAAGTCTGCATCCACCGTCTGAGAATACAACTgcaaaactattcagaccccttggattttGTCACAAAGTGGGATTCAATTTGATTTGTCATTTTGGCAATCAACACAAAATACACggtcaaaaaaaaaaagtttaaaaaaagtatTCTTTAAGACGAATAAAAGTGGAACTAAAATAGtcgttacataagtattcagctccctgagtcactacatggtagaaacacctttggcataGATTACAGCTGTCAGTCTTCTTGGGGAAGTCTAAGATATGTACCTGGATGACTATGTATCTGGGTGATTTAATACATAATCCACAGCATTATATTAACCATGTTtaaaagagatattcaatgtctggtAGATGGGTAACTAACAAATCAATCACTGCCCTTCTGTTAAAGCTTTCCaaaagctccctggtctctgtagttaaatctgtgcttgaaattcaatacttgactgagggacctgaAAATGTATGTATGGGGGACTGAGGAAGGCTtagtcattccaaaatcatgtcaacccctattatttgTTAAGCCAAAAtgtactcctgaactaatttaggcttaactaaacaaaggggctgaatacttatgcaacaatATATTTAGTACTGAATTTATTAAAAGAAAAGAAAGTGAAAtccaagggttctgaatacttttgcaaggcactgtatctgtgtgTGAACGTGTCTGATTTGCTATTACAGTATACTATTACTTGAACAGCCTTTTCTGTAATCACAATCTCTCTCTCGGATTGTAAAAAGATGCCACCTGATTAAAATGTCAGgcataaaatgtttttatttttgacACGA

Function

GO: NA

KEGG:

id description
K08614 ADAM28; disintegrin and metalloproteinase domain-containing protein 28

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU571439 lncRNA downstream 81657 37386901 ~ 37387101 (-) True G503195
TU571416 lncRNA downstream 106699 37361031 ~ 37362059 (-) False G503178
TU571420 lncRNA downstream 106699 37361157 ~ 37362059 (-) False G503178
TU571421 lncRNA downstream 106699 37361324 ~ 37362059 (-) True G503178
TU571388 lncRNA downstream 136888 37331484 ~ 37331870 (-) True G503159
TU571563 lncRNA upstream 60748 37542864 ~ 37543074 (-) True G503311
TU571568 lncRNA upstream 66540 37548656 ~ 37548926 (-) True G503316
TU571572 lncRNA upstream 69457 37551573 ~ 37551825 (-) True G503320
TU571573 lncRNA upstream 71115 37553231 ~ 37553592 (-) True G503321
TU571579 lncRNA upstream 79721 37561837 ~ 37562101 (-) True G503327
XM_021606371.2 mRNA downstream 124674 37340705 ~ 37344084 (-) True ogfod2
XM_021606370.2 mRNA downstream 124680 37340705 ~ 37344078 (-) False ogfod2
XM_021606369.2 mRNA downstream 124682 37340705 ~ 37344076 (-) False ogfod2
XM_021606365.2 mRNA downstream 275606 37160379 ~ 37193152 (-) True LOC110525881
XM_021606364.2 mRNA downstream 365764 37097779 ~ 37102994 (-) True LOC110525880
XM_021606382.2 mRNA upstream 146679 37628795 ~ 37778250 (-) True zmat4a
XM_021606385.2 mRNA upstream 342938 37825054 ~ 37842809 (-) True sfrp1a
XM_021606388.2 mRNA upstream 434314 37916430 ~ 37992973 (-) False loxl2b
XM_021606387.2 mRNA upstream 434314 37916430 ~ 37992978 (-) False loxl2b
XM_036980060.1 mRNA upstream 434314 37916430 ~ 37996902 (-) False loxl2b
TU571387 other downstream 132206 37331484 ~ 37336552 (-) False G503159
TU571292 other downstream 227821 37239844 ~ 37240937 (-) True G503064
TU570775 other downstream 403769 37050703 ~ 37064989 (-) True vamp8
TU570258 other downstream 951490 36508056 ~ 36517268 (-) True hk2
TU569190 other downstream 1700829 35765366 ~ 35767929 (-) True G501142
TU573476 other upstream 1472754 38954870 ~ 38967403 (-) True nsmfb
TU573890 other upstream 1723762 39205878 ~ 39206269 (-) True G505472
TU573913 other upstream 1750577 39232693 ~ 39233210 (-) True G505493
TU573926 other upstream 1939552 39421668 ~ 39423490 (-) True aopep
TU575200 other upstream 2141569 39623685 ~ 39624344 (-) True G506641

Expression Profile