RNA id: XM_036980060.1


Basic Information

Item Value
RNA id XM_036980060.1
length 4158
RNA type mRNA
GC content 0.49
exon number 14
gene id loxl2b
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 37916430 ~ 37996902 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATAAACCTAAtggcaagttaaagtgtactgttagctagctaatgttggcaggctggctcgctagctaacgttatgtgtatgctctccactttttggaggaccgagttttgaaatcagtggaattgaTATGGTAGCTAAGGATATGGAGAAAAAACACCACTAGTCTGGATTACATTGTCAAACTAAGGCAACCATGCATGGCATCAGACAGGAAACGCTTCCAAACATGATGCATACTGATAACCTCTTCTGTCTACTGTCTGACTTGACAGACACCACCATGCTGGCCGCCTGGTCGCTCCCCTGCTGCTTCACCATCCTGTTGGGCCTGTTAGAACTGTGCCGGGCCCAGTACGAACACCTAGGCTACCCACACGGCTATCCACAGGGCTACCCAGAGCCTGAGCAGGAGCAGTACAGTGCCCCGGAGCTGCCACCTGACACACCCAGGATACAGCTGCGTTTGGCAGGGGACAAGCGCAAGCACAACGAGGGGCGCGTGGAGGTTTTCTATGATGGCGAGTGGGGCACAGTCTGTGATGATGACTTCTCCATCCATTCTGCCCAGGTGGTGTGCAGGGAGTTGGGCTACCTGGAGGCGGTCTCCTGGTCTCCATCCTCTAAATATGGGAAAGGAGAGGGACGCATCTGGTTTGACAATGTCCAGTGCACTGGAAAAGAGAAGACCCTGGCACTGTGCACCTCCAACGGGATTGGTGTGTCCGACTGCAAGCACACAGAGGACGTAGGTGTGGTGTGCAGTGACAAAAGGATCCCCGGATTTAAATTCATCAACACCATGGCCAATAATGTGCAGAGTTTAAACATTCAGGTGGAGGACGTGCGTATCCGGGCCATTCTGTCGTCATATCGCAAGCGCATCCCAGTGACGGAGGGCTACGTGGAGGTGAAGGACGGAGGGAAGTGGAAGCAAATCTGTGATGTGGAGTGGACCAAGCACAACAGCAGAGTCATCTGTGGCATGTTCGGTTTCCCCGGAGAGAGGAAGTACAACGCCAGAGTCTACAAGATGTTTGCTCGCAGGAGAAAGCCCTCTTACTGGGATTACTCTGTCAACTGCACTGGAAACGAGGCCCACGTGTCAAGCTGCAAGCTGGGCCATGCCGTGGCAGCAAAGGCCAATAGCACCTGTGGTGGGGGCACGCCCGTGGTGGTCAGCTGTGTGCCAGGAAGAGCCTTCTCCCCAACCCCCATGACAGGCTTCAGGAAGGCCTTTAGACAAGAGCAAACGTTGGTGCGTCTGCGAGGTGGGGCCATCGTAGGGGAAGGTCGTGTGGAGGTGCTAAAGAACGGCGAGTGGGGAACCATCTGTGATGATAATTGGAGCCTCCTGTCAGCCACAGTGGTGTGTCGAGAGCTGGGCTTCGGGAGTGCCAAGGAGGCCCTGTCTGGTGGTCGGCTTGGACAGGGCATGGGCCCAGTCCATATGAATGAGATTGAGTGCTCTGGCTTTGAGAAGTCCATCACAGAGTGCTTCTTCAACAAAGAGTCGCTGGGCTGCAGCCATGAGGAGGATGCAGCCGTGAGGTGTAACGTCCCAGCAATGGGCTTCCAGGAGAGGCTGCGTCTGAGTGGGGGACGTAACCCAAACGAGGGGCGTGTGGAGGTGCTGGTGGAGAGGAACGGCTCCCAGGCATGGGGTACGGTGTGCAGTGATGGCTGGGGCACCATCGAGGCTATGGTCGTGTGCAGACAGCTTGACCTCGGCTTTGCCAGCAATGCCTTCCAGGAGACGTGGTACTGGCCAGGGGAGGTGAGTGCTGACCCTGTGGTGATGAGTGGAGTGCGATGTTCTGGCACTGAGATGTCCCTTTCCCAGTGCCTGCACCATGGAGCTCATCTTACCTGTCCTAAAGGAGGGGGACGCaatgctgccggagtctcctgctCAGAGACTGCCCCTGACCTGGTGCTGAACCCCCAGATAGTGGAGCAGACCACCTATATGGAGGACAGGCCCATGTTCATGCTGCAGTGTGCCTATGAGGAGAACTGCCTATCCACCACCTCCAGTGAGACCCCTGCCAGCTCTCACCGCCGCCTGCTGCGCTTCTCCTCCCAGATCCACAACAACGGGCAGTCTGACTTCCGTCCCAAGGCTGAACGCCACTCCTGGGTGTGGCATGACTGCCACAGcCATTATCACAGCATGGAGGTGTTCACCCACTACGACCTGCTCAGCCTCAACGGCACCAAGGTGGCAGAGGGACACAAGGCCAGCTTCTGTCTGGAGGACACCGAATGTGAAGAGGGTATTGAGAAAAGATATGAGTGTGCCAACTTTGGGGAACAAGGCATCACTGTGGGCTGCTGGGATACGTACAGACATGATATTGACTGCCAGTGGATCGACATCACAGACATTAAGCCCGGAGATTACATATTCCAGGTTGTTATTAACCCTAACTATGAGGTGCCTGAGTCCGACTACTCCAATAACTTCATGAAGTGCAGATGCAGATACGACGGCCACCGTATATGGATGTACAGCTGTCATAATGGTGGTTCGTTAAGCACTGAGACTGAGGAGTCCTTCCCTGGGCTACTGAACAACCAGGTTATACACAGATAAAAGAGGAGAACAGAATCATCACCACCACAGAGAGACTGCCAAAAAGCCCCCaaacccctcgctctctccccctgtctctccctcccagtcagcAATCCAGGATAACTATTTTATTGTGTTGCCAATACACGCCTACAGCTGTTATGAACCCTCCTAGTGGGGAGTGCCACAGTATATGGACAGCACTCATTGGTTATGCCTAAAGAAGCAACCCACTGCCCACCTCTTTCAGACATCCCCTCTGCTTCTTAGGCAGACCATTTGATGTATCCTTCTGTCTTCCCAGAACCAGGTAGcctctcccagtcccagctctctGGTTGAGGTCAATACGGGATTGAGAGTTTCTCTGTCACGCTTGGGTTAGAGACATGAAATGTACAACCCCACTGCTCCCCACTAGAGGTGATGATGAGActcatatggcaccctattccctatatagtgcactatgtttggGCCCTGGACAAAAttagtgcattataaagggaattCGGCcgcactttctttttttttttatatgataAAGCGTTAATTCAAAAGGTAATTTTCCCGGAGTTTGGATATCTCTGACAATAATTCTCTCTCTTGGACTATGAACAAAGGCATATTTGGGAACACTACAGACTTTATTGATCATTAGCTAATAATAGTTTGTAATGGCTTTATGCAGTAGGTGCCTCATGTAGGCTACTCTCTGAGTAGCTTAATGAAGATGCTTATTgaggatacagtacagtacaataccataATAGAATGCAATAACTAACTGCCAGTAAGTGCATTGCTGTTGGGAAATGTTTAACAAACAGTCTTATTCCAAGAGATGTCCTGTGccttttttttctcactttgtgCAGCAAGTTGATTTCATAATTTATTCGATTTCCTCTTCCTTGGGAAATTTAGACAACATCATTTTGAAGTGCAGGGTTGTTACCCTCACCAATCTTTTCATCTGTGGTACAGGGTACTCCCTCAGATGTCATCAGTATGCTCAACATGCTCTATTTGAAGTTATTCTGTGGTGTTCTCTCACTCTGACATCTGTAATAAACCCAGTACCAGTCCCAAGTGCCTGAAAAGTTCCTTTTCCATTGTAAAAACTGTGACCAAATAGCAGACATTAGTCTGCTCCACACCACaacagagtggtggtggtacGGTAGTTAAAATGGAGGGATACAACTAATCCCCCTCAGTGCCTTATAGtgagaaaatacatgtttttttgtttgttcatgAATGTCGAAAAGGAAACAATCTCATATTTTCCAGCAAACATCATAAGTAACTTATTGTTGTAAAAGTCAGGGATTTTAAAATCaattttttttctttgtttttttcttttacaataatgtgtgtgcgagtgtctcattttattgtactttttataATGGTGCTACCCAACTGTCATCCTCTGTTTTATGAGGGTACAGTGACAGCTGAATCGCTAAAGTATGTTATGTATGCTAACTGTATACTTGATTGGAGTGTTTAAATCCATAATTTGCTTTGTTAACTATATTAAAGGTAAGATTTAATGAGCAAACAAATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU572479 lncRNA downstream 4193 37911986 ~ 37912237 (-) True G504175
TU572477 lncRNA downstream 6440 37909784 ~ 37909990 (-) True G504173
TU572450 lncRNA downstream 7582 37908490 ~ 37908848 (-) True G504147
TU571680 lncRNA downstream 233698 37680246 ~ 37682732 (-) True G503416
TU571622 lncRNA downstream 304594 37611544 ~ 37611836 (-) True G503368
TU572551 lncRNA upstream 97760 38094662 ~ 38098524 (-) True G504244
TU572760 lncRNA upstream 318279 38315181 ~ 38341619 (-) True G504447
TU572822 lncRNA upstream 379254 38376156 ~ 38376856 (-) True G504499
TU572798 lncRNA upstream 484828 38481730 ~ 38489983 (-) True G504476
TU572795 lncRNA upstream 501754 38498656 ~ 38515439 (-) True tm2d2
XM_021606385.2 mRNA downstream 73621 37825054 ~ 37842809 (-) True sfrp1a
XM_021606382.2 mRNA downstream 138180 37628795 ~ 37778250 (-) True zmat4a
XM_021606373.2 mRNA downstream 434314 37468758 ~ 37482116 (-) True LOC110525887
XM_021606371.2 mRNA downstream 572346 37340705 ~ 37344084 (-) True ogfod2
XM_021606370.2 mRNA downstream 572352 37340705 ~ 37344078 (-) False ogfod2
XM_021606389.2 mRNA upstream 14429 38011331 ~ 38018136 (-) False hdr
XM_021606390.2 mRNA upstream 14429 38011331 ~ 38018136 (-) False hdr
XM_036980063.1 mRNA upstream 14429 38011331 ~ 38018136 (-) False hdr
XM_036980064.1 mRNA upstream 14429 38011331 ~ 38018136 (-) True hdr
XM_021606391.2 mRNA upstream 27116 38024018 ~ 38235017 (-) False LOC110525897
TU571387 other downstream 579878 37331484 ~ 37336552 (-) False G503159
TU571292 other downstream 675493 37239844 ~ 37240937 (-) True G503064
TU570775 other downstream 851441 37050703 ~ 37064989 (-) True vamp8
TU570258 other downstream 1399162 36508056 ~ 36517268 (-) True hk2
TU569190 other downstream 2148501 35765366 ~ 35767929 (-) True G501142
TU573476 other upstream 957968 38954870 ~ 38967403 (-) True nsmfb
TU573890 other upstream 1208976 39205878 ~ 39206269 (-) True G505472
TU573913 other upstream 1235791 39232693 ~ 39233210 (-) True G505493
TU573926 other upstream 1424766 39421668 ~ 39423490 (-) True aopep
TU575200 other upstream 1626783 39623685 ~ 39624344 (-) True G506641

Expression Profile