RNA id: XR_005052093.1


Basic Information

Item Value
RNA id XR_005052093.1
length 7022
RNA type mRNA
GC content 0.52
exon number 23
gene id LOC110525909
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 38746654 ~ 38857447 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGCGCTAGGTAGGAGTGGGGTCTGACCGCAGAGCCTACTGTTTAAGAGAAAGGGAattctccctccgtctctctttcaCTCAGTCCCTAGATCTCCtggctgctctctctttctctctctcactggctaCAGCATCAGCAGGCTGGCTCTCTAGGTGGCAGGAATAGAGTgactgggagaaagagaggaaaatgACATAactgtcattgctttagaaggcAAAGACAGACCCACAagaacatttgttttatttatttgagcCCAACTCTACATTGATTTAGCTCCAGTGGAGAGATTCTGTGAATTCAGTAGAAGGATACAAGGGCATCTTCGCCATCTCACAGATAGAACAACTCCATTCTCCTGACAGATCACAAGCTCTCCCAGCAGGACTTGACAGGACCTGGTCATCATGGTGATGAAAGGCCTGCTCCTAGGCTGTGTGACCGTGACCGTGTTGCTCCAGCTCTCCAGCGCTGGCCTGGTCAAGAAGATCATCCGCCACCGCAGAGAGACCCTGAGAGACCCCTCTGAGAACATGACCCTGCCCCACCCTGACCAGCCAGTGGTCTTCAACCACATCTACAACATCAATGTCCCCTCCAGCTCCCTGTGTTCCGTAGACGTGGAGAGCCCCGGAGGAACCGAGATCAAGCCCAAAGGAAGTCCAGTCCAGTCGGACATGCAGACCACAGAGCACCTGGAGCACACGGTGGACGGGGAGAACCAGATCGTGTTCACCCACCGCATCAACATTCCCAAGCAGGCGTGCGGCTGTGACAACCCCATGCACGACATGAAGGACATCCTGAGCAGGCTGGAGATGCTGGAGTCTGAGCTGTCCAGCCTCAGAGAACAGTGTGGCAGTGGAACCAGCTGCTGTGGAGCTCAGATTACAGGTGAGGTGGCCACCAAGCCTTACTGCAACGGCCGTGGTAACTTCAGCACTGAGacctgcagctgtgtgtgtgagcccGGCTGGAAGGGACCCAACTGCACCGAGCCTGAGTGCCCCAACTTCTGCCAGGACCAGGGGCGCTGCATCGATGGCAAGTGTGTCTGCTTCGAGGGCTTCTATGGAGATGACTGCAGTATGGAGCTGTGTCAGGTGGACTGTGGGGACAACGGGGAGTGCATCGACGCCATGTGTATCTGTGAGGAAGGCTTCACGGGGAACGACTGCTCCCAGACCAACTGCCTGAACAACTGCCTGGGGCGTGGCCGCTGCGTGGacgatgagtgtgtgtgtgacgagcCGTGGACGGGCTACGACTGCTCCGAGCTCATCTGTCCCAACGACTGCTACGACCGCGGCCGCTGCGTCAACGGAACCTGCTTCTGCGAAGAGGGCTTTACAGGAGTGGACTGTGGGGAGCCTATCTGCCCCAGCAACTGTAACAACCGCGGGGTGTGCGTCAACggccagtgtgtgtgtcactcCGGCTACAGCGGGGAAGACTGCTCCAAGCTCACCTGCCCCAACGATTGTACTGAGAGAGGCCACTGTTTCAACGGGAGGTGCATCTGCGACCCAGGCTTCGAGGGAGTGGACTGTTCCATTTTGTCCTGCCCAGACAACTGCAGCAACAGAGGCCAGTGTGTCAATGGAGAGTGTGTCTGCAATGCAGGATTTGAGGGCGAGGACTGTTCTGAAATCTCCTGCCCTATGAAGTGTCTGAACCAAGGGAGTTGTGTGAAcggagagtgtgtgtgcagtaaAGGCTTTGCGGGGGATGACTGCAGCATCAAGACCTGCCCCAAAGACTGCCTGGGACACGGCGAGTGTGTTGATGGCAAGTGTGTGTGCTTTGTGGGCTTCACAGGCAAAGAATGCAGCGAGCTGACTTGTCCCAACAACTGTCTGAACCGTGGCCACTGTGTCAATGGCCAGTGTGTGTGCAACCAGGGCTTTGCTGGGGAGGACTGCAATGAGAAGACGTGTCCCAATAACTGCCTGGAGAGGGGTTACTGCGTGGACGGGAAGTGTGTGTGCTTCGAGGGATTCCAGGGCCTGGACTGTTCTCTGCTGACCTGTCCAGGAGACTGCGAGGACCAGGGGAAATGTATGAACggagtgtgtctgtgtaacgACGGCTTCATCGGAGAAGACTGCTCTGAGGTGTCTCCACCCAAGGACCTGACAGTGCTAGAGGTCACCCCGGAGACAGTGGACCTCTCCTGGGTTAACGAGATGCAGGTGTCAGAGTACCTGGTCACCTATGTGCCAACCGGCCTTGGGGGCCTGGAGCTGGACATGCGTGTGCCTGGGGACAAGAAGACTGCCACCATTAGTGAGCTGGAGCCTGGTGTGGAGTACCTGATCAGTGTCTTCGCTGTTCTCAACAACAAGAGGAGTGTCCCTGTCAGTGCCAGGGTGGCAACACATCTTCCTGTGCCTGAGGGACTCAAGTTCACATCAGTGAGGGAGACTGCAGTGGAGGTTCAGTGGGACCCTTTGGACATCCCCTTTGATGGCTGGAACCTCATCTTCAGAAACACTAAAGAGGAGAACGGGGAGATTCTGAACTCCCTGGGCAGCCCTGACACCATGTTCGAGCAGTCTGGGCTGGGACCTGGTCAGGAGTACGAGGTCAAACTGGAGGTGGTGAAGAACAACACCAGCGGACCCCCGGCACGCAAGAACGTTTTCACAAAGATCGATTCGCCCAGAGAGGTGGATGTGCGTGACGTAACGGACACCACAGCGCTGGTGACCTGGTTTCTGCCGGTGGCTGTGGTGGACGGGGTGAGCGTGACCTACGGGCCCAACGACAACCCCTCAGACAGGAACACAGTGGAGCTGTCCTCCAGCGACACACAGTACCACCTGGGCAGCCTGAACCCTGACACAGAGTATGAGGTGTCTCTCATGGCCAAGAGGGGAGAGATGACTAGTGTGCCTGTGTCTGAGAACTTCCTAACAGACCTGGATGCCCCGCGGGATCTGCAGGCGGTAGAGCTGACTGACGAGAGCATCACTCTGGAGTGGAAGAACAGCCAGGCTAAAGTAGACAACTACCGCATCAAATACGGCCCCCTCTCTGGAGGAGACCACGGGGAGCTGCTGTTCCCTACAGGACCCATGGACACCACCCAGGCCAAGATCAGTGgCCTGAGACCTGGGACAGAGTATGGGATGGGAGTGACTGCCGTGAAGAGCGAGCGCGAGAGCCTTCCTTCCACCACCAATGCCGTTACAGCATTGGATGCGCCTAAAAACCTTGAGGTGGAGTCTTCCACTGAGACTCAGTTGGTGCTGGTGTGGCAGAAGCCGGTGGCTAAGATCGACAAGTACAAGTTGCTATATGTGTCAGCCGACGGGTACAGGGCTGAGTTGACCCCCTTCTCCAATGACATCAAGTACACCCTGAGGAACCTGACGCCTGGCATGCTGTACACTATAACCCTGACCGCTGAGAGGGGACACAAGCAGAGTGGCACCGCaaccatcacagcagcaacagAAGCTGAACCCATCGTGGAGTATCTCTTGGTCTCCGACATCACACCAGACAGCTGTAAACTGGCCTGGTCAGCGGAAGAGGACCTCTTTGATAGTTTTGTCATTATGATCAATGATACAAGCGACGACCTCGCTTCTCCGCAAGAGGTGGTCGTGCCCGGGGAGGAGAGAACAACAGTGCTCACTGAGCTAATTGAGGACACAGAGTACAACATTGAGCTCTATGGAGTCATTTCGGGACAGCTCTCCAATTCTATTTCCGTGGTGGCAAAAACAGGGCTGGGCACCCCCACGGGCATCCGCTTCTCTGAAGTCACTGATACCTCTGCCACCGTACACTGGGCAATCCCCAGAGCTCGAGTGGACAGCTACCGTGTCACGTATGTCGCTGCTCAGGGAGgcgctCCCAAGACTGTGACAGTGGGTGGAACTGAGACTCAGACCGTGCTGCCAAACCTGACCCCTGGAGTTACCTACCAGGTGTCCGTCATTTCTGTGAagggacagaaggagagtgaGCCAGGCTCCAGCAGCGTTACCACAGCTCTGGACAAGCCCCGTGGTCTGACCGCAGTCAACATCACTGACACTCAGGCTCTGCTCCACTGGCAGCCTGCCATCGCCACTGTAGACGGATATGTCATCACCTACAGCGCAGACACTGtttCCCCAGTGATGGAGAGAGTGTCTGGGAACATTGTTGAGTTTGAGATGAGCTCCTTGACCCCTGCCACCCACTACACTGTCAAGGTCTATGCCATGAGAGCATCTGCTAAGAGCGCCGTCACCACAACTGAATTCACCACTGATGTGGATGCGCCTCAGGGCCTGGCAGCCAGTAACATCCAGACAGAGAACGCCATGTTGACCTGGAAGGCCCCACGCGCTGGCATCACCGGCTACATCCTCAGCTTCGAGTCAGCTGACGGCACAATCCGGGAGGTTGTTCTGAGCCCCACAGCCACCTCCTACAACATGGCCCAGCTGAGTGCCTCCACTGAGTACTCCGTCAGACTGCAGGCCATCGCAGGGCCCAAGAGGAGCAGAGTCATCACCACCGTCTTCACCACCAttGGCGTGCTGTACAAACACCCTAGGGACTGCTCCCAGGCCTTGCTGAATGGAGACACAGCGTCTGGTGTTCACACCATCTACCTGGGTGGAGATGAGGGTCAGCCCATACAAGTCTACTGTGACATGGACACGGATGGAGGTGGATGGATTGTGTTTGTCCGACGCCAGAGCGGTAAACTGGAGTTCTTCCGCAACTGGAGGAACTACACTGCTGGCTTTGGTGACATGAACGACGAGTTCTGGCTCGGCCTGTCAAACCTCCATAAGATCACAGTAGCAGGACAGTATGAACTTCGTGTGGACCTCAGAGACAAGGGGGATGTAGCCTACGCCCAGTATGACAAGTTCTCTGTCTCTGATCCCCGCAGTCGCTACAAGGTCCACGTTGGAGGCTACAGTGGTACCGCGGGTGATTCTATGACCTACCACCATGGTCGCCCATTCTCAACCTACGACCATGACAATGACATCGCCGTCACAAACTGTGCCCTGTCCTACAAGGGTGCCTTCTGGTATAAGAATTGCCATCGTGTCAACCTTATGGGACGATATGGAGATGACAGTCATAGCAAGGGAGTCAACTGGTTCCATTGGAAAGGCCACGAGCACTCCATTGAGTTTGCTGAGATGAAGATCAGGCCATCCAACTTCAGGAACTTTGAGGGAAGAAGGAAGCGATCGTAAACCAACCGACCAATCCACGCTCCGACCCCTCTCCTTGTCGCTCCGCTTCGTGACCCCTGAACTCGTCCTCCATCCTCTGCCCCTGCTGATTCCAGGGtagcgtgccatttgggacaccaccCACACCTCCCCGCAGCTACCAAAGCCACTGCCAAGAGCCCAGCCACCTCAAATTACACCCCTCCTCCTGCTCACTCACAGAAATAAGCACAGATTCAGTCAAATTCACTACAAATTCCACTATCCAACCCCACCTGATACAAAATGGTTGTGTGCAGTATAAATACTGTCAAAGCCAAATTGATGTGAGAAAAAAATGAACTCCACCAACCCAGCCCACGCCGATTAAACATGCACCAAAGAGAGCTTAATCTATGAAACCCGAGTATAaagcatttctttctttcttctcacTCTCACAATGTTACAGCACTAAGCGGAGGGGTGCATTTGAGTCTGGTATGGCATGGCACATTAACATGTAGAATACTGATGTTTTCTGCCTCTACAGTGTGTCCATCTCCTCCAGCCACAGTAGGTAGCTTGTTCATTAGGGTGTTCGCAGAGAGGGCATGGCTGTCTACATACATGTGGTCTTGTTTTAGTGTCAGGGCCTCTTCAATAATACTGATAACCTCTAAACTGGATTATAGAAATTATATTCTTTGAATAACACAACACCCAATAAAAGCACATACTGTACCGTATGTACATTCAATTCCATCATCCGGATTGAAGTGATGTTATTGATCTCCTGGATTGAAGTGAGATTATTGATCAAAAACGGATTTTCTTCATTAAACCGCACGACTCGTTAAGATGTTAAATGTCTGTGTAAAATGGAGAGAGATCCCAGAGAAAGTCCTATCTTGTCATTCATCAGTCTATGTGTGACTCATCCTTTGTCCCTTTATCTTTCCCGACATCCCTTCTTCACCTCAACCTGCACACTGTCATCTGAAATGACACGGGCGAAAAGAAATGACATTCTGAATATAGATCATCTGCTGCATCCCACACAGACATATGTGGATGACATGATGTGTTTCCATTGATTGTGTGGGCCATGCAAGTGCTGTGCAATTGTTTCTTACACATTTACCTGAGCTTGTACTATTTGTTCCTCCAGCTATCATGCATTAGCTACAGGATCCAGAGGAAAAAGTCAATGTGtttgatttgtttttatttcCTTTATAAAATCCAAGGCAGGACCTATTATTCAATATATAATGAAATGGTGGGTGATTGTTacattttttgctaaatgtgAAATACATATATGGATACATATATGTGTGCAACAAGTCAGAGGGGAATATTGTGttgaaatacaaaatatattgatGCTGAAAATAGGTTAATGGCCAATTCCAATTGACATTGTAAGGTCACTGTTCACTTTGCTGAGAAACATATTTGGGCACACCAAAATTAACTACAGAAGTTTAATTAAGAGGGGACTATTGTGttgaaatacaaaatatattgatGCTGAAAAGAGGTTCATGGCAAATTCCAATTGACATTGTAAGGTCACAGTGTTCACTTTGCTGAGAAACATATATTTGGGCACACCAAAATTAACTAAAGAGAAGTTGTTCTCATTCTGTtttgtcccccctcccccctccccatgcCTGGAGACGAAACCACTGACCCCCGTCCCTTGAATACCTGTGTAATGAAACGTTTCTGTGCTTCTGTGGTTTAACATTTTTGGGGGATTATAACTGGGTGAACAACAGGTGTTTCTCTGTAACACGTATTACAATAAAACAAAGTTTGTTTAAAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU573084 lncRNA upstream 2142 38806623 ~ 38807042 (+) True G504742
TU573080 lncRNA upstream 4760 38804196 ~ 38804424 (+) True G504739
TU573074 lncRNA upstream 13777 38795143 ~ 38795407 (+) True G504733
TU573073 lncRNA upstream 14301 38794560 ~ 38794883 (+) True G504732
TU573060 lncRNA upstream 34367 38774473 ~ 38774817 (+) True G504719
TU573141 lncRNA downstream 47685 38905132 ~ 38910062 (+) True G504794
TU573145 lncRNA downstream 53788 38911235 ~ 38911457 (+) True G504796
TU573147 lncRNA downstream 55881 38913328 ~ 38913616 (+) True G504798
TU573214 lncRNA downstream 169543 39026990 ~ 39027474 (+) True G504865
TU573250 lncRNA downstream 201875 39059322 ~ 39059625 (+) True G504896
XM_021606409.2 mRNA upstream 125581 38668479 ~ 38683603 (+) False traf2a
XM_021606408.2 mRNA upstream 125581 38668480 ~ 38683603 (+) False traf2a
XM_036980070.1 mRNA upstream 125581 38670727 ~ 38683603 (+) False traf2a
XR_002473840.2 mRNA upstream 142684 38664668 ~ 38666500 (+) False LOC110525907
XM_036980069.1 mRNA upstream 171188 38629046 ~ 38637996 (+) True si:ch211-102c2.4
XM_021606414.2 mRNA downstream 562 38858009 ~ 38860997 (+) True b3galt8
XM_021606418.2 mRNA downstream 8147 38865594 ~ 38892231 (+) False zgc:162952
XM_021606419.2 mRNA downstream 8149 38865596 ~ 38892231 (+) False zgc:162952
XM_021606415.2 mRNA downstream 8152 38865599 ~ 38892231 (+) True zgc:162952
XM_021606432.2 mRNA downstream 176215 39033662 ~ 39035194 (+) True LOC110525918
TU567034 other upstream 4657447 34151140 ~ 34151737 (+) True G499111
TU565715 other upstream 5344129 33461635 ~ 33465055 (+) True LOC110525816
TU565692 other upstream 5488836 33317637 ~ 33320348 (+) True c6h22orf39
TU565528 other upstream 5644923 33154691 ~ 33164261 (+) True LOC110525799
TU565537 other upstream 5659186 33146467 ~ 33149998 (+) False LOC110525799
TU573608 other downstream 412512 39269959 ~ 39311874 (+) True fancc
TU574234 other downstream 816565 39674012 ~ 39678263 (+) False LOC110525927
TU574235 other downstream 816565 39674012 ~ 39678263 (+) False LOC110525927
TU574236 other downstream 816565 39674012 ~ 39680031 (+) False LOC110525927
TU574237 other downstream 816565 39674012 ~ 39680031 (+) True LOC110525927

Expression Profile