RNA id: XR_005052095.1


Basic Information

Item Value
RNA id XR_005052095.1
length 2581
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110525916
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39005211 ~ 39015501 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atagtttgttaacaagaaatgtgtgttgtggttgaaaaacaagttttaatgactccaacctaagtgtatgcaaacttccgacttcaactgtattatactataataaaCTGGGTCCCATCCTTACAAACTCACCTGCATATACACAGTCAGAGCACTTCTCTAATGTGCTGCTGTTTGCACAGATCCAACATGCTGTTGATCAAAACCCTATTGTAGCGAATTCGGGGGTGGCCTCTTGGTGTCGGGTTAAGGTCGTTACACTATTTATCATTTCTCAGCCGTTACGTTTAGGTTAGGTTGTATTATGATCAAGGTCATTGCATTTACATTTCATTCAGTATACTGTGGTTACATCGTGAAACGATATGAACTAAATCCAGATGATCATGGTCACGTAAGCATATCCGTGCATCTTTATACTCCCTTTTTTCAGTTGCCATATGTGCCTTTCACATTTCTGTTTGTAATTTCAATGTTCGTAATTTCAATGAACTTGTATTGAAACGACTTGGAATAgttgttgaattgacgtctgtgacCAGTGGGTTTAGTCTTTTATGATTTGAAAACCGATTTAAAATAATAATGACTTGATTATGAATTCATTACATTATGAATTAATTACTGGTTGACTAAATGGGCGACCTAATATTCTTCTTCAAATAACTGTTAACTCCTTTTTTGTCTACTGCAATTCAGCTTTTAGCTGCGATTGTGTACAAGGCAGACTAACTAATAATAAAACCTTGATATATTAGTGACAAAAACGAGTTAACAATCAATGTCGACCGATAGGCTGTTACTCTGTTTAAAGCCTTTCACTATGTTAAACTACCGGTAACCTCGTCCTCATGCTATTGTGCATTTGGGAAAAGTTGTCTGGGAACGAGATTATGCTGTCAGTAGCCTATTTAGTATTCATGTGTGAGATATGTAATGACTAATAAATTGCACTGACTTCTACTTATCCGTATTCCTATTAGTGCTCAAGTTTTAGTCACATGCTGATAAATAATACAATTGAAAGATAGGCTACTGTTTCCTTTACATTACTACCTCACGTGCCGGAAGTAATAAAACGTATCTGTGTTTTATTATGACGTCGAAATAGAACTATATCAATCCATGACACGGTTCTTCTATGCGTGACAAAAATCTATTGAAAAGCGCCGATAAAACAAAAATGCATATTACAGCGAAAGGCAGGACAGTATGCAGTCGGAGGATACAAAGGCAAAGATACTGACTCTGCAAGAGCAGCGGCTCTGCGTACAACAATTAGAGCTGCAGACCCAGGCAGAGTACCATGCTGCAAAGGAGATCTTAGAGAATGATCAGAAAGCTCCACAAGGTAGATGCACCCTGGGCAGGTCACTGCCCAAGCCTGGACCATCAATGGAGagtGTTGTGGAGCGGGAGAAGTGTCGACAGTGTAGTCTGATAGAGCAGCACAACAGGCTGAGATTTGCTGTCAGGGCCAAGGAGTCACAGCAGCTGGAGATGGAGCCGGACATGAAGGTCCTGGAGCTGGACTCCATATTGGATGATGACGAGCAGCACTACGACCAGCGTGTGAGACAGCTGGAGAACAGCCTAGAAAAGATGACCATCAAAATCACAGAGGCTGAGAGGATCCAAAAAACCTACCTGCGAGTCTGCGACCACCTACATCGGGAGGTGTGTGAGATGCCCATGGCTCTGGATCAGCTGCAGAACTCAGTGGTCGACGGGCAGTCAGAGCTAGGAAAGGTGGTGCACATGTCTTACACCGCAGTGGCTGCAGTGGACTGCACTAAGAGTCAGCTGGTTCACGTGGAGAGGCAGCTAATGGTGGAATGCAGAATGATGGAGAAAGAGTTGACTGAAAGGAGGGGAGCgaaagagaaggaggtggagggtcggctggagagagagagggagggagagcgacgGAGCAGCAGAGTAGCTCAGAAGTTGAAAGAGcagGGTTGGAGAGGGTCGTCTACCAGAGAAGGACTGGCTGAAGATACATCCCCTATCAGAGCCCAGCAGACCATCGCGGCCCCCATTACGACACAGTCCGTCTTCAAACTGGTGGAGGATATTGATGCTCTGAGGGAAGCCCTCAGCTGCACTGATCTGCAGGAGCTGGAGACACAGCTGGCCTCTCAGAAGGCCACCAGGGAGCAGCTGCACACCCAGATAACCCAGTGTGAGGAGCTGGTCAGAAAGAGCATGGAGACTCTGGCTACCCTTGAGCTCCAGTACGCCCAACTCAAGTTCAGCGCCGGACCCGGTTCCGACAGGACTCTCCCAGGGAGTTGGGGGATCTGGATGCCACCGAGAAGCTGAGGGAAATCGGTGTCCGTCTGCTCACACTGCAGGCCACAGCTTCAGAGAAGACTGAGGAAAACACTGCCGACCATGAGAAGGTGTGGAGCTTCCTGGAGCAGAGCATCATGATGGAGCCCAGAAACCTCAAAAGGGCCAGCAGCCCAGTGTACAACAGCGTCTCAGAAGACACGTTCCAGTTCCGCAGTCTGGAGGAAGACTGCACCCTGTCCCGCGAGGAGATCAAGCGTCGCAGTATCCATCTGATCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU573496 lncRNA downstream 28819 38977033 ~ 38977364 (-) True G505102
TU573452 lncRNA downstream 81372 38924562 ~ 38924811 (-) True G505070
TU573451 lncRNA downstream 81726 38924221 ~ 38924457 (-) True G505069
TU573435 lncRNA downstream 101321 38904661 ~ 38904862 (-) True G505053
TU573432 lncRNA downstream 105822 38900124 ~ 38900361 (-) True G505050
TU573846 lncRNA upstream 125185 39140685 ~ 39140930 (-) True G505429
TU573875 lncRNA upstream 167481 39182981 ~ 39183403 (-) True G505458
TU573876 lncRNA upstream 168795 39184295 ~ 39184678 (-) True G505459
TU573877 lncRNA upstream 170494 39185994 ~ 39186194 (-) True G505460
TU573879 lncRNA upstream 173011 39188511 ~ 39188731 (-) True G505462
XM_021606420.2 mRNA downstream 38643 38926899 ~ 38967540 (-) False nsmfb
XM_021606424.2 mRNA downstream 38643 38926899 ~ 38967540 (-) False nsmfb
XM_021606425.2 mRNA downstream 38643 38926899 ~ 38967540 (-) False nsmfb
XM_021606426.2 mRNA downstream 38644 38926899 ~ 38967539 (-) False nsmfb
XM_036980075.1 mRNA upstream 1192 39016692 ~ 39032181 (-) False pnpla7b
XM_036980074.1 mRNA upstream 1192 39016692 ~ 39033431 (-) True pnpla7b
XM_021606433.2 mRNA upstream 74731 39090231 ~ 39106621 (-) True ercc6l2
XM_036980082.1 mRNA upstream 297971 39313471 ~ 39434970 (-) False aopep
XM_036980083.1 mRNA upstream 297971 39313471 ~ 39434970 (-) False aopep
TU573476 other downstream 38780 38954870 ~ 38967403 (-) True nsmfb
TU571387 other downstream 1669631 37331484 ~ 37336552 (-) False G503159
TU571292 other downstream 1765246 37239844 ~ 37240937 (-) True G503064
TU570775 other downstream 1941194 37050703 ~ 37064989 (-) True vamp8
TU570258 other downstream 2488915 36508056 ~ 36517268 (-) True hk2
TU573890 other upstream 190378 39205878 ~ 39206269 (-) True G505472
TU573913 other upstream 217193 39232693 ~ 39233210 (-) True G505493
TU573926 other upstream 406168 39421668 ~ 39423490 (-) True aopep
TU575200 other upstream 608185 39623685 ~ 39624344 (-) True G506641
TU575254 other upstream 747791 39763291 ~ 39764776 (-) True LOC110525929

Expression Profile