RNA id: TU573608


Basic Information

Item Value
RNA id TU573608
length 1539
RNA type TUCP
GC content 0.54
exon number 14
gene id fancc
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39269915 ~ 39312098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCAGAGGGAAGTTCACTGTTGTTACTTTAGAAAGGAGAACGTTTTCTGATAGTGAATTTGAACACAACATACAGACCCTGCTCTGCAACAGGCTGCTCCAATAGcacAGACATACACATGCGGAGCTCCACCACAGAGACCATGAGGACTATTCCCTTCGTAGGCCAGTTCCTCGGCCGCCTCTGCTGGAACCCCTATGTCACTGCGGATGCTGAGAGCCGCTCACTCCTGCTCCAGAGTCTGTGGAGTCTGTATTCAGAGGAACCTCATAACGCTGTCGAGAGGAAGGCCAACCAGTGGATACGGAATGTGTTATGTCAGCTTGCTACAGAAGAAGAGGACAGTGCAACACATATGTTAGTGAAACATATGGGCCTGCCACCAAAGGAATACAATGTAAAGGTTCTAAGAAAGGTGTTCGTGTGACAGCGTTCTTGCTGCATCAGTGGCATGTGTCCCCCTGGTCACATGTCCTGAGACTGCTCCTCTCATTGGTGCGTTGCTGCAGCGGCCGGTGACCTGCGATAAGGCAGCCCTCAGCCAGGACTTCCTGGATGCTGTAAGCTCCGCCTACTCCAGAAAGTGTGTGTCTCTGGAGGCCCAGGCAGTGGTGTCTCTGTGGTGCCATAACCTGGCCAGCCTAGAGGGGGCAGTGATGTCTCTACTGGACTCTGTGCTCTCCAACCCAGCCTGCATACCGCACAACCTAGAGAACACCATCACTCACTCACTACTGGTCCATGCTGGTGCAGGTGGAGGGGAACCAGACTCTGCTATCTCTTATCCACACCTTCACCATCTGCTTCCTCAGGGAACTGGCAGCCCTGCAGCCTCAGGAATGTGTGTCCTTGAAGGCCTTCTTCCCACACACACCCCAGAGCTTACTGGCCCCTCTGCTGACCCATCCTTCAGAAATGGCCCAGGAGGCGTGGCCAGAACACCTGGCCTGGATCACTGCATCACTACAGAGACtcactgaggaagaggaggaaggcaaCAGGTGGCGGCCAGAGAAGTCTGGGATCACCTGAGGTCACTCTTCCTGCTCTCGGCTCCTCCCCTTCCTGCTGACCGACTGCAGTCATTGGCCGAGCTGATGTCAGCCGTCCCCCAGCAGCCGTCCCTGGACTCGCTATTGGTCGTCAGCCTCCTGGGCAACTTTGCAGTTTTCTCCCACAACCCCCTGAGTGGTGCCAGGGAGATAGTCCGCATGGTGGTGCAGCGATCAGGGCTGGTCCGTGCCAGGCTGTTCCACCAACCGGGCGCTGACAGGATACACACAAACAGACGCTACAGATACGACAGTGGGAGGACATACAGTCACAACTAGACACACAAACGTATCAGGACACACTCTTAGCCATGCAAGAGCAACAAGTCATAAAACGTGCCCTAACCCTTCCACTCATATTATTGCCTCAGAACACATTCCTCTCATTACACACACATGGGGAAACATCCGTTGATTTGAAGAAGGGAAATGACATGCAACAGCACCTGATATGGACACAATGTCTTTCTCTACAGAATGCCTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU573664 lncRNA upstream 39924 39229771 ~ 39230035 (+) True G505255
TU573662 lncRNA upstream 42788 39226877 ~ 39227171 (+) True G505253
TU573660 lncRNA upstream 46852 39222739 ~ 39223107 (+) True G505251
TU573659 lncRNA upstream 47591 39222013 ~ 39222368 (+) True G505250
TU573658 lncRNA upstream 48961 39220461 ~ 39220998 (+) True G505249
TU573611 lncRNA downstream 1276 39313150 ~ 39315080 (+) True G505206
TU573723 lncRNA downstream 58546 39370420 ~ 39370649 (+) True G505314
TU573725 lncRNA downstream 59536 39371410 ~ 39371666 (+) True G505316
TU573738 lncRNA downstream 76887 39388761 ~ 39389035 (+) True G505329
TU573759 lncRNA downstream 104992 39416866 ~ 39417144 (+) True G505347
XM_036980081.1 mRNA upstream 35085 39155476 ~ 39234874 (+) False ptch1
XM_036980080.1 mRNA upstream 35085 39158478 ~ 39234874 (+) True ptch1
XM_036980078.1 mRNA upstream 201569 39042158 ~ 39068390 (+) False hsd17b3
XM_036980076.1 mRNA upstream 201569 39042159 ~ 39068390 (+) False hsd17b3
XM_036980079.1 mRNA upstream 201569 39042211 ~ 39068390 (+) False hsd17b3
XR_005052100.1 mRNA downstream 90663 39402537 ~ 39405261 (+) True LOC110525923
XM_036981746.1 mRNA downstream 209849 39521723 ~ 39526646 (+) True cbwd
XM_036980089.1 mRNA downstream 222062 39533936 ~ 39535789 (+) True foxd5
XM_021606441.2 mRNA downstream 224770 39536644 ~ 39583427 (+) True pgm5
XM_036980092.1 mRNA downstream 362090 39673964 ~ 39678265 (+) False LOC110525927
TU567034 other upstream 5118222 34151140 ~ 34151737 (+) True G499111
TU565715 other upstream 5804904 33461635 ~ 33465055 (+) True LOC110525816
TU565692 other upstream 5949611 33317637 ~ 33320348 (+) True c6h22orf39
TU565528 other upstream 6105698 33154691 ~ 33164261 (+) True LOC110525799
TU565537 other upstream 6119961 33146467 ~ 33149998 (+) False LOC110525799
TU574234 other downstream 362138 39674012 ~ 39678263 (+) False LOC110525927
TU574235 other downstream 362138 39674012 ~ 39678263 (+) False LOC110525927
TU574236 other downstream 362138 39674012 ~ 39680031 (+) False LOC110525927
TU574237 other downstream 362138 39674012 ~ 39680031 (+) True LOC110525927
TU574282 other downstream 422910 39734784 ~ 39748480 (+) True LOC110525928

Expression Profile