RNA id: trnaa-ugc-17


Basic Information

Item Value
RNA id trnaa-ugc-17
length 74
RNA type mRNA
GC content 0.59
exon number 1
gene id trnaa-ugc-17
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39288589 ~ 39288662 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcccgtgtggctcagttggtagagcatggtgcttgcaatgccagggttgggggttcgattcccacgggggaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU573664 lncRNA upstream 58554 39229771 ~ 39230035 (+) True G505255
TU573662 lncRNA upstream 61418 39226877 ~ 39227171 (+) True G505253
TU573660 lncRNA upstream 65482 39222739 ~ 39223107 (+) True G505251
TU573659 lncRNA upstream 66221 39222013 ~ 39222368 (+) True G505250
TU573658 lncRNA upstream 67591 39220461 ~ 39220998 (+) True G505249
TU573611 lncRNA downstream 24488 39313150 ~ 39315080 (+) True G505206
TU573723 lncRNA downstream 81758 39370420 ~ 39370649 (+) True G505314
TU573725 lncRNA downstream 82748 39371410 ~ 39371666 (+) True G505316
TU573738 lncRNA downstream 100099 39388761 ~ 39389035 (+) True G505329
TU573759 lncRNA downstream 128204 39416866 ~ 39417144 (+) True G505347
XM_036980081.1 mRNA upstream 53715 39155476 ~ 39234874 (+) False ptch1
XM_036980080.1 mRNA upstream 53715 39158478 ~ 39234874 (+) True ptch1
XM_036980076.1 mRNA upstream 220199 39042159 ~ 39068390 (+) False hsd17b3
XR_005052100.1 mRNA downstream 113875 39402537 ~ 39405261 (+) True LOC110525923
XM_036981746.1 mRNA downstream 233061 39521723 ~ 39526646 (+) True cbwd
XM_036980089.1 mRNA downstream 245274 39533936 ~ 39535789 (+) True foxd5
XM_021606441.2 mRNA downstream 247982 39536644 ~ 39583427 (+) True pgm5
XM_036980092.1 mRNA downstream 385302 39673964 ~ 39678265 (+) False LOC110525927
TU567034 other upstream 5136852 34151140 ~ 34151737 (+) True G499111
TU565715 other upstream 5823534 33461635 ~ 33465055 (+) True LOC110525816
TU565692 other upstream 5968241 33317637 ~ 33320348 (+) True c6h22orf39
TU565528 other upstream 6124328 33154691 ~ 33164261 (+) True LOC110525799
TU565537 other upstream 6138591 33146467 ~ 33149998 (+) False LOC110525799
TU574234 other downstream 385350 39674012 ~ 39678263 (+) False LOC110525927
TU574235 other downstream 385350 39674012 ~ 39678263 (+) False LOC110525927
TU574236 other downstream 385350 39674012 ~ 39680031 (+) False LOC110525927
TU574237 other downstream 385350 39674012 ~ 39680031 (+) True LOC110525927
TU574282 other downstream 446122 39734784 ~ 39748480 (+) True LOC110525928

Expression Profile