RNA id: XM_036981746.1



Basic Information


Item Value
RNA id XM_036981746.1
length 363
RNA type mRNA
GC content 0.51
exon number 5
gene id cbwd
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39521723 ~ 39526646 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGACGAGGAGGATGACTGCCCAGAGTTCCCCATATCAGGAAAGCCCTCACCTGGCATGCAGATACCTGTGACCATCATCACTGGCTACCTCGgtgTTGGGAAGACAACGCTGTTGAATTACATTTTAACGGAGCAACACAATAAGATAATCGCTGTCATACTCAATGAATTTGGAGAAGGAGGCGCTCTGGAGAAGTCTCTAGCTGTGAGCCATGCAGGAGAGCTGTATGAGGAATGGTTGGAGCTCAGGAACGGCTGCCTCTGCTGCTCCGGCAAGCAGATAGCCCTTGCAGACTTGACCATCATCAATAAGACTGACCTGGTGACTGGAGAGGAGCTCAAGCACCTTAGAGACAACTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU573790 lncRNA upstream 37054 39464768 ~ 39484669 (+) True G505377
TU573775 lncRNA upstream 88822 39432680 ~ 39432901 (+) True G505363
TU573771 lncRNA upstream 91691 39429805 ~ 39430032 (+) True G505359
TU573768 lncRNA upstream 94820 39426668 ~ 39426903 (+) True G505356
TU573766 lncRNA upstream 96566 39424799 ~ 39425157 (+) True G505354
TU574128 lncRNA downstream 55365 39582011 ~ 39587770 (+) True G505697
TU574233 lncRNA downstream 140608 39667254 ~ 39667805 (+) True G505795
TU574244 lncRNA downstream 144507 39671153 ~ 39671452 (+) True G505803
TU574269 lncRNA downstream 189745 39716391 ~ 39717493 (+) True G505827
TU574300 lncRNA downstream 238322 39764968 ~ 39765533 (+) True G505857
XR_005052100.1 mRNA upstream 116462 39402537 ~ 39405261 (+) True LOC110525923
XM_021606437.2 mRNA upstream 209625 39269915 ~ 39312098 (+) False fancc
XM_021606436.2 mRNA upstream 209625 39269926 ~ 39312098 (+) False fancc
trnaa-ugc-17 mRNA upstream 233061 39288589 ~ 39288662 (+) True trnaa-ugc-17
XM_036980081.1 mRNA upstream 286849 39155476 ~ 39234874 (+) False ptch1
XM_036980089.1 mRNA downstream 7290 39533936 ~ 39535789 (+) True foxd5
XM_021606441.2 mRNA downstream 9998 39536644 ~ 39583427 (+) True pgm5
XM_036980092.1 mRNA downstream 147318 39673964 ~ 39678265 (+) False LOC110525927
XM_021606445.2 mRNA downstream 147321 39673967 ~ 39678265 (+) False LOC110525927
XM_021606447.2 mRNA downstream 150226 39676872 ~ 39678265 (+) False LOC110525927
TU573608 other upstream 209849 39269959 ~ 39311874 (+) True fancc
TU567034 other upstream 5369986 34151140 ~ 34151737 (+) True G499111
TU565715 other upstream 6056668 33461635 ~ 33465055 (+) True LOC110525816
TU565692 other upstream 6201375 33317637 ~ 33320348 (+) True c6h22orf39
TU565528 other upstream 6357462 33154691 ~ 33164261 (+) True LOC110525799
TU574234 other downstream 147366 39674012 ~ 39678263 (+) False LOC110525927
TU574235 other downstream 147366 39674012 ~ 39678263 (+) False LOC110525927
TU574236 other downstream 147366 39674012 ~ 39680031 (+) False LOC110525927
TU574237 other downstream 147366 39674012 ~ 39680031 (+) True LOC110525927
TU574282 other downstream 208138 39734784 ~ 39748480 (+) True LOC110525928

Expression Profile