RNA id: XM_036980089.1


Basic Information

Item Value
RNA id XM_036980089.1
length 1664
RNA type mRNA
GC content 0.44
exon number 2
gene id foxd5
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39533936 ~ 39535789 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAACAGGCTGACCAGGACCACAGGGACAGGACGAGCCGAGAAAGTCAGATAATACATATATTTATGCGCTTTTACGCGTGTTAAGAATTAATGATACGGTGGTAAAAGTTTCGCTTTTACGCGTGTGTGGACGTTGTGGTCTGAGCCATGACCCTCTCCAAGGAGTATGAAACGTCCCAGCAGACTGGCTTGCCACTGAACGAGGATGAAGTATACATAGCGGGAGAGGACGAGCCTCTCCTTGACCGGCATCTTCTCTACCGGACGGACAACACCAGGGAGCCTCGCTCATCCGCCGAGTCCAGCGTCGAACTGGACTGCTCTGAGTTCGACTCATCTGGGGAGAGCGAGAATAGTTTCTGTGCAGACACACCTTCATTGGGAAGACCTCGCGGTTCTGTAAAGCCCCCGTATTCCTACATCGCTCTCATCACCATGGCAATCTTACAGTGTCCTCTGAAGAAACTGACGCTGAGTGGCATCTGCGACTTCATCAGCAACAAGTTCCCCTACTACCGGGAGAAGTTTCCGGCGTGGCAGAACTCCATCAGGCACAACCTGTCACTCAACGACTGCTTTATCAAGATTCCAAGAGAGCCTGGAAACGCAGGCAAAGGCAACTACTGGTCTCTGGACCCCGCATCTGAGGACATGTTTGACAACGGCAGCTTTCTCCGGCGCAGGAAGAGGTTTAAGAGAAACCAGCCGGAGTGTATGAAAGATGGACTCATGTTTTACCCAAACTTTAGCTGTTACCGGCCTTACTGCGTCCAAAGCCAAGTGAGCGCACCGGCTGCCCCTCTCTGGTGTATGCCCGTTCAGGACGGGCTTGTCATGCTACCTTCCTCCTACCTACCATACCCGAGTCTAAGCAGCAGCTGTAAGGCCCTGCTCGTTTGGTTCCCGAGCCTGATTCCAGCTCCCAATGACTCCATTCTGCCCAAGTGCAATGTTGAGCGCTGTTCCTTCAATAACAGAGAATGTCCAAATGCCTTACCTTAGTTGTTGAAGTGTTTGTTTGTTATAGCTTTTACCAAAGAAACCTCTGTGTTTGTATACAAGTGATACAATGATCCAATGGAGACACGTTTACGCATTTCTCAAAGAAAGTATTTAAACTGCATGTTGTTTATGTTCATTCAATGTTGAATACAGTATGTCAAATGAAGTTAATGTAAATATGAAGACTGATAATATATTTGTTAAAATATGGTGTCAATGTGAAAGTGGAACCACTTTTGCCAAATGTTAAAAATCCATTGTAATTTTGATTTTCGACATTGAAATGAAACAATAAAAATAGTTTAGTTTGCGGTGTTTGATTATGCTTAGGCCAAATTATTTCCTTCCCCACATTTTATTACACTTAGAAATTGACTGCTAAAGATGCCATCTATTAGTACAAAATAACCCGAGGAAATGATTGCACCTAAAGGTTTCCAATTtcgatttctggaaaaccaggtcTAAATTAGCAGGACTATAATATAATGCACATAATTACTTAGCAAAAAGGCAAAATAGGCATCGGAACAGTAAATGACAGTTGTTATTGTGAATTATTGTAAGCCTAGGCTCATATTTATTTTCATAAATGTTGTTTGTCCTGTAATTGGCGAAACAACCCGTGTTTGTCAATAAAACACATCAGTCTCATCAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU573743 lncRNA upstream 2745 39435988 ~ 39531191 (+) True G505333
TU573790 lncRNA upstream 49267 39464768 ~ 39484669 (+) True G505377
TU573775 lncRNA upstream 101035 39432680 ~ 39432901 (+) True G505363
TU573771 lncRNA upstream 103904 39429805 ~ 39430032 (+) True G505359
TU573768 lncRNA upstream 107033 39426668 ~ 39426903 (+) True G505356
TU574128 lncRNA downstream 46222 39582011 ~ 39587770 (+) True G505697
TU574233 lncRNA downstream 131465 39667254 ~ 39667805 (+) True G505795
TU574244 lncRNA downstream 135364 39671153 ~ 39671452 (+) True G505803
TU574269 lncRNA downstream 180602 39716391 ~ 39717493 (+) True G505827
TU574300 lncRNA downstream 229179 39764968 ~ 39765533 (+) True G505857
XM_036981746.1 mRNA upstream 7290 39521723 ~ 39526646 (+) True cbwd
XR_005052100.1 mRNA upstream 128675 39402537 ~ 39405261 (+) True LOC110525923
XM_021606437.2 mRNA upstream 221838 39269915 ~ 39312098 (+) False fancc
XM_021606436.2 mRNA upstream 221838 39269926 ~ 39312098 (+) False fancc
trnaa-ugc-17 mRNA upstream 245274 39288589 ~ 39288662 (+) True trnaa-ugc-17
XM_021606441.2 mRNA downstream 855 39536644 ~ 39583427 (+) True pgm5
XM_036980092.1 mRNA downstream 138175 39673964 ~ 39678265 (+) False LOC110525927
XM_021606445.2 mRNA downstream 138178 39673967 ~ 39678265 (+) False LOC110525927
XM_021606447.2 mRNA downstream 141083 39676872 ~ 39678265 (+) False LOC110525927
XM_021606448.2 mRNA downstream 198914 39734703 ~ 39750180 (+) False LOC110525928
TU573608 other upstream 222062 39269959 ~ 39311874 (+) True fancc
TU567034 other upstream 5382199 34151140 ~ 34151737 (+) True G499111
TU565715 other upstream 6068881 33461635 ~ 33465055 (+) True LOC110525816
TU565692 other upstream 6213588 33317637 ~ 33320348 (+) True c6h22orf39
TU565528 other upstream 6369675 33154691 ~ 33164261 (+) True LOC110525799
TU574234 other downstream 138223 39674012 ~ 39678263 (+) False LOC110525927
TU574235 other downstream 138223 39674012 ~ 39678263 (+) False LOC110525927
TU574236 other downstream 138223 39674012 ~ 39680031 (+) False LOC110525927
TU574237 other downstream 138223 39674012 ~ 39680031 (+) True LOC110525927
TU574282 other downstream 198995 39734784 ~ 39748480 (+) True LOC110525928

Expression Profile