RNA id: XM_021606441.2


Basic Information

Item Value
RNA id XM_021606441.2
length 2488
RNA type mRNA
GC content 0.54
exon number 11
gene id pgm5
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39536644 ~ 39583427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCGGAAGAGAAGACTTGGCTTAATATTACATTAGCCTATCCAAAGCTCTCACTGCAAGTTTTCTGTGGCATGTGTTTAAAACCTACAGCAGGCCTATAACTAGCATATATCTCAAACCGAGTTTATAAGCCAAGGAATTTGTTGACGGGGATTTATCATCTTAATAGCCATCCCTCTGGAAAGCGCTGGTGTGCTGTCATTGCGTAAACGCATCCCCCACCTCCCTCGAAAGTGCTACTTCTGGAGGACTAGAGCGGACATCACTGGACGTCTCACCTCCCTAACACAGTCTGTCTCCTACATATGTTTGACTCTCCACCTCTATCCAGCCGACAGTGAGTCATCCCCGGTGTAGCCAGTCGACCCGCCACTCCCGGTGGGTTCTTGTGCGGAGGATGGAGACAAACCCCATTCCCGTGGTAACGGTCCAGACGAGCCCGTTTGATGACCAGCGGCCCGGTACTAACGGGCTGCGGCGGAAGACGGCTGTGTTCGAGGGCAAGAAGAACTACCTGCAGAACTACATCCAAAGTGTACTGTCGTCCATCGACCTGAGGGACCGCCAGGGATGCACGATGGTGGTGGGCAGCGACGGACGCTACTTCAGCCGAGCAGCCACCGAGATTATAGTTCAGATGGCCGCTGCCAACGGGATTGGTCGGCTGGTGATTGGACACAACGGTCTTCTCTCCACCCCTGCTGTGTCCTGCATCATCAGGAAGATCAAGGCTATTGGTGGAATCATCCTGACAGCCAGTCACAATCCAGGAGGCCCCGGGGGAGACTTTGGGGTCAAATTCAACGTGGCCAATGGAGGCCCGTCTCCAGACACGGTGATGGAGAAGATTGCCCAGGTGAGTAGGACCCTGGAGGAGTATGCCATATGTCCTGACCTCCGCATTGACCTGGCCAGGCTGGGACGCCACGACTTTGACCTGGAGAACAAGTTCAAACCCTTCAGAGTTGAGATAGTGGACTCGGTGGAGTTGTACCTCAACCTGCTGAGAACCATCTTTGACTTCAACGCCATCAAGAGCCTTCTGACAGGACCTGAACAGCTGAAGATACGCATAGACGCCATGAACGGAGTGATGGGTCTGTACGTGCGCCGTATCATGTGTGATGAGCTGGGGGCTCCTGCCAATGCGGCTGTCAACTGTGTCCCCATGGAGGACTTTGGGGGCCGGCCTCCAGAGCCCAACCTCACATACGCAGCCCCATTGGTTGATGCCATGAAGGGCGGAGACATTGGTTTCGGAGCTGCGTTCGATGCAGACGGGGACCGGTATATGATCCTGGGTGAGAATGGTTTCTTTGTGAACCCTTCAGACTCCTTGGCTGTTATGGCTGCCAACCTCTCCTGTATCCCCTACTTCAGACAGCTGGGACTAAAGGGCTTCGCTAGGAGTATGGCTACCAGCACTGCCCTCGACAGtgtggcCAAGGCCTTGAAGGTGGCTCTGTATGAGACTCCTACAGGCTGGAGGTTCTTTGGGAACCTGATGGACTCCGGGAGGTGCTCGCTCTGCGGAGAGGAGAGCTTCGGGACAAGTTCAGACCACATCCGTGAGAAGGACGGTCTGTGGTCGGTGCTGGTGTGGCTGTCCATGATGGCTGCCAGGAAACAGGGCGTGGATGAGATCGTCAAGGACCACTGGGCCAAGCTCGGACGCAACTACTTCTGCAGGTTTGACTATGAGGGCGTGGACCCCAGAGCAGCCTTCTATCTGATGAGGGACTTGGAGGGGGTGATCACAGACAAAGCCTTCCCAAGCCAGAAGTTTGCGGTGGGGAACACCGTCTACAGCGTGGAGCGGGCTGATAACTTTGAGTACGTCGACCCTGTGGACGGAACTGTGGTCCGCAACCAGGGTCTGCGGATCATCTTCACTGATGCATCCCGTCTGGTCTTCCGTCTGAGTGGGAGTGGGGGAGGGGCCGGGGCCACGGTCCGGATCTATGCAGAGAGCTTAGAGAGAGACCCCGAGAGACAAAACAGAGAAACTCAGGCGGTGCTGGGTCCCCTCATTGCCATCGCCCTGAAGATCTCTGACATCCACGAGAGGACAGGACGCCGCAGCCCCACCGTCATCACCTGAGCTCTGCtccaccgcacacacacacacacacacctgagtgcTCCCCcccacaaaacacacacgcaTCTCTGAGGCCACCACGTCCTGCTTGTTGTCACACCTGGGGCCAATAGCAAGCAAGCGCTATTCACTCTCTATTTATATCAACATTTTAAATATTATTTGGTCTGCAAAGAAAAGAAGCAAGCTGTGTATTTCAGCAGTTGATAAGACACCAATTGTTAATATCATGCCTCTGTTTTGAATGTTTTGTGTTCTGGATGTGTGAAATTACAGCCACAAAGCCTGTGTCtttatctatgtgtgtgtgtgtgtatttgtttgccTTATCATTCATTATAAAGGCGACTGACGGAATTAAAGGCAGAAGTCCAGTTGTTTATACAA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016868 intramolecular transferase activity, phosphotransferases molecular_function

KEGG:

id description
K15636 PGM5; phosphoglucomutase-like protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU573743 lncRNA upstream 5453 39435988 ~ 39531191 (+) True G505333
TU573790 lncRNA upstream 51975 39464768 ~ 39484669 (+) True G505377
TU573775 lncRNA upstream 103743 39432680 ~ 39432901 (+) True G505363
TU573771 lncRNA upstream 106612 39429805 ~ 39430032 (+) True G505359
TU573768 lncRNA upstream 109741 39426668 ~ 39426903 (+) True G505356
TU574233 lncRNA downstream 83827 39667254 ~ 39667805 (+) True G505795
TU574244 lncRNA downstream 87726 39671153 ~ 39671452 (+) True G505803
TU574269 lncRNA downstream 132964 39716391 ~ 39717493 (+) True G505827
TU574300 lncRNA downstream 181541 39764968 ~ 39765533 (+) True G505857
TU574311 lncRNA downstream 189386 39772813 ~ 39776463 (+) True G505865
XM_036980089.1 mRNA upstream 855 39533936 ~ 39535789 (+) True foxd5
XM_036981746.1 mRNA upstream 9998 39521723 ~ 39526646 (+) True cbwd
XR_005052100.1 mRNA upstream 131383 39402537 ~ 39405261 (+) True LOC110525923
XM_021606437.2 mRNA upstream 224546 39269915 ~ 39312098 (+) False fancc
XM_036980092.1 mRNA downstream 90537 39673964 ~ 39678265 (+) False LOC110525927
XM_021606445.2 mRNA downstream 90540 39673967 ~ 39678265 (+) False LOC110525927
XM_021606447.2 mRNA downstream 93445 39676872 ~ 39678265 (+) False LOC110525927
XM_021606448.2 mRNA downstream 151276 39734703 ~ 39750180 (+) False LOC110525928
XM_036980093.1 mRNA downstream 153500 39736927 ~ 39750180 (+) False LOC110525928
TU573608 other upstream 224770 39269959 ~ 39311874 (+) True fancc
TU567034 other upstream 5384907 34151140 ~ 34151737 (+) True G499111
TU565715 other upstream 6071589 33461635 ~ 33465055 (+) True LOC110525816
TU565692 other upstream 6216296 33317637 ~ 33320348 (+) True c6h22orf39
TU565528 other upstream 6372383 33154691 ~ 33164261 (+) True LOC110525799
TU574234 other downstream 90585 39674012 ~ 39678263 (+) False LOC110525927
TU574235 other downstream 90585 39674012 ~ 39678263 (+) False LOC110525927
TU574236 other downstream 90585 39674012 ~ 39680031 (+) False LOC110525927
TU574237 other downstream 90585 39674012 ~ 39680031 (+) True LOC110525927
TU574282 other downstream 151357 39734784 ~ 39748480 (+) True LOC110525928

Expression Profile