RNA id: TU574236


Basic Information

Item Value
RNA id TU574236
length 2890
RNA type TUCP
GC content 0.44
exon number 2
gene id LOC110525927
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39673964 ~ 39680031 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAGAACCCACTTCCTGGTGCCAGATCAGCGtgggataaaaataaaaacttcTCTTAATTGGAGTTGCTTTTGGCGATCAGGATGATTGACGTGCGGGCGTGGGCGGAGTACGTGGTGGAGTGGGCGGCTAAGGACCCGTACGGCTTTCTGACGACGGTTATCCTGGCGCTCACACCCCTCTTCATCGCAAGCGCCCTGTTGTCGTGGAAACTGGCCAAAATGATTGAGGCGCGCGACCGCGAGCAGAAGAAAAAGCAGAAACGCCAGGAGAACATCGCCAAAGCCAAGAGGACCAAGAAAGACTGAGCCGGAGAGCGGGATCAGGAGAGAAGAGTAGCTACAGTACACAGCTATGCTCAACGCTCTCTTTACTtgccacacccccacccctcgtctctTCAACCCAGCCCAGCGCAGGTCCCCAACCTATTACTCTTGTCCAGTGTAGGAGGGATGTAGGCCCTACATGGAGGCCTTACAGCGCTGAGGGAACGGTACAGACCGGGGAGGCTCATTCGATGGGACTATCATCACAATGTGGAGATCTACCGTCTgagcttggtggtgttgcagtaCCTTGCATTCCATTTGTAACATCTTCACTCCAATGATTTCATTAACTTGTAAAAAAACTAAGTTCTCCATTTGAAGTTACTAATTAAATATCTGaattattttcttgtttttaatgaAGTTCTGAATTAAAAAAATATGGCTGTTTTCTCCTTGCAAATCATAACCCTCCCTGAATGATGCTTAACCGAAAAGTTTGAGTTCCTGCCCAACTAGATGCAGTGCAACACCtgtgcatcaaccaatggttgcatgCCATGTCAACTCAGTCGGCATAGATGGATAGCTATATCACACGTTTTGCTTATAGTTAAACACCAATCCAAGTGTTTTGAACATCTGGCcggagtgtactgtagtctggcaGGAACTCGACCAAGAAGTGAGCCAGGCAATTTTCATACATGGGTTTTATTCAGTGTTTTTAACATCTAGACAATATAACACACACTTCTTGCAAAGGGACATCTACTCCTGAGACCTGCAACCATTTTGTGAGCTGTGCGATATCCTTTCCGTcatttaataaaaataaagaattgTTTAAAAGGTTTGTATTGTCATGTGTTGGGGGtgtatatataaaatacaaaGCCATTAAATAAATTACACCTTGTCATGCAGAAAAATATTTAATatgtatgccatttagcagacaattGATCAAAATCAACTTACACTAGTGCATACATACCTTGCTACCTTAAGATGAGTGCACGAACTGTGGATAATCAAACCCTACATCATGATCTACCAATTGAGAAACACAGGACCACCTACTTTCCAGTACTTACATCACATCCCAGTTCTCTCAAGCCTTGCAGTTTCATTTATAATCCACAACAAATCAAACAAGATATATTGACTACCTACAACTGAACTTTATATACAGAGTTTACAGTAGGGTCAGGGAGATCAGATAAAATTGTCTTCCACATCCCATGAATGCCATTCACTGTCAAGTACTCCCTGATTCAATGCATATGAAGAGCAGAGCTTCCATTATTAGTTTACATCATaaccagggtcatattcattaaaCTGCTTACGTCACATTTAAGAGCATTGTGACCGGTTTCCGTTGCCAAACGTTTtatggtgtgcactaatgaaaaCAACCCAGTCCAGATCCCAAAATGCATGTGAAAAGTGATAAAAACAAATTAGTtagttgtgcaagacattttatagataaaacAATAAGTAGCATGTTGTTTTTAATGTGTGCATGCTTTTCTCCTTCGACAAACAAAAGCTGATTCAAAAGGGGTTTAAGATTTCAAAACTCTTCCGCAAAGATCTCCGGTAGGATAGACTTGACTTTCCCTGATGAAAGGTGGCTATCGAGGAGGGGAAGACACTTTTGTTCACCTGCTAACGAATTGGCATCTCCTCAACCACTTATCGGTTTCTGggtcacagaggagaggacagaagagagagtggaggacgAATTTATGCGCAAATGAGAAAAGGGTCATTGAAGCTGGCCAGATCATGCTTCCTTCCCAGCATCCTCTCTCGATCTTGCCGATTTCAATTGTTCAGTCTTTTCAGGTCGCCGATCCATGGTGGTAATGATGGAAGGAAGCCTGTGAATACTCACATAGGGAGGGCCTATACTTGTTTACAGATGTCTAGTTTTTTGGATGTAGGTATGAAGAGAGTGCATATGcacagtatgcatgtgtgtgtctatgtcttagttgtgtgtgtgtgtgtgtgtgggcaaacTATGAATAGCACTGCATATAGCCTGTGTGTATTTCTTGTGTGTAGCATCGTGTCATTGTGTGTTAGGtaccagtatcgcgatactcAGAAGTACCATGGCAAGGGAACAAAACATGAAGCAGAAAAACAGTTCTAATCTTGTAAACACACAGCCTTCTGTTGTTACCCAGAGTAATTGTTTATTTTCCAAACTATAATCACACAACTGCAGGAGTTCAGTTTgcttcatgtttttatttttttaccatggAAAATCCAGTATCGCAGTACTGGTATCATGACccagtgagcgtgtgtgtgtggctatttCTTGGCTGCGGGTATCCAGGAACCAGGCTGGAATGTGTTGGCTGTACTGACAGGCTCCTCACTGGTCTCTGGCTGGCCGAAGCTAGTGGCGGCGGCGTGGCCCTTGGCTATGGTCTGAGCAGGCCGAGCCACCAGGCCCTCCTCGTACTCCTTAGCCTGCAGAGCCAGCTCTCTCTCATCCACCTCCCTCGCCTTTCCTTTGATGTGCTCCCTGTAGTGCTGGTTTTTCACCAGCTCCTGTGGGGAGTagggaacatacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU574244 lncRNA upstream 2560 39671153 ~ 39671452 (+) True G505803
TU574233 lncRNA upstream 6207 39667254 ~ 39667805 (+) True G505795
TU574128 lncRNA upstream 86242 39582011 ~ 39587770 (+) True G505697
TU573743 lncRNA upstream 142821 39435988 ~ 39531191 (+) True G505333
TU574269 lncRNA downstream 36360 39716391 ~ 39717493 (+) True G505827
TU574300 lncRNA downstream 84937 39764968 ~ 39765533 (+) True G505857
TU574311 lncRNA downstream 92782 39772813 ~ 39776463 (+) True G505865
TU574328 lncRNA downstream 110135 39790166 ~ 39864875 (+) True G505882
TU574405 lncRNA downstream 228342 39908373 ~ 39911925 (+) True G505955
XM_021606441.2 mRNA upstream 90585 39536644 ~ 39583427 (+) True pgm5
XM_036980089.1 mRNA upstream 138223 39533936 ~ 39535789 (+) True foxd5
XM_036981746.1 mRNA upstream 147366 39521723 ~ 39526646 (+) True cbwd
XR_005052100.1 mRNA upstream 268751 39402537 ~ 39405261 (+) True LOC110525923
trnaa-ugc-17 mRNA upstream 385350 39288589 ~ 39288662 (+) True trnaa-ugc-17
XM_021606448.2 mRNA downstream 54672 39734703 ~ 39750180 (+) False LOC110525928
XM_036980093.1 mRNA downstream 56896 39736927 ~ 39750180 (+) False LOC110525928
XM_021606456.2 mRNA downstream 202746 39882777 ~ 39901525 (+) False LOC110525933
XM_021606457.2 mRNA downstream 202756 39882787 ~ 39901525 (+) True LOC110525933
XM_021606459.2 mRNA downstream 236107 39916138 ~ 39921723 (+) False LOC110525934
TU573608 other upstream 362138 39269959 ~ 39311874 (+) True fancc
TU567034 other upstream 5522275 34151140 ~ 34151737 (+) True G499111
TU565715 other upstream 6208957 33461635 ~ 33465055 (+) True LOC110525816
TU565692 other upstream 6353664 33317637 ~ 33320348 (+) True c6h22orf39
TU565528 other upstream 6509751 33154691 ~ 33164261 (+) True LOC110525799
TU574282 other downstream 54753 39734784 ~ 39748480 (+) True LOC110525928
TU574449 other downstream 282621 39962652 ~ 39963098 (+) True G505988
TU574576 other downstream 516769 40196800 ~ 40203886 (+) True G506095
TU574667 other downstream 577036 40257067 ~ 40259050 (+) True LOC110525949
TU574816 other downstream 864832 40544863 ~ 40547513 (+) False G506281

Expression Profile