RNA id: XM_021606448.2


Basic Information

Item Value
RNA id XM_021606448.2
length 2770
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110525928
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39734703 ~ 39750180 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGGCAGTTACACAGGGAGGGGACTATGAGACTCTTTTTGCAAATTGCTTGAGTTTGACACCCCATTCGTCAAACGCTCACAGCTGACCCACCGGCAAAAGCACTGGAGGAGAAGTAACGTAGGACGGAGTAGTAGGATGCTCTCACAAAATTGGAGGACGGCTACAGGAgctcagagagacatggagtTCAGGGATCTAACGGCCAGGGCCGGACTCTGGTATGAAAACTTCATGAAGAATGCAGACCCCAGGACAGAGGACTGGTTTCTCATGTCATCGCCGCTCCCCCAAACCATAATAATCGTGGCGTACATCTACTTTGTCACCCGGCTGGGGCCCAGACTCATGGAGAACCGCAAGGCTTTCCAACTCAAAGAAATTCTCATTTTCTACAACTTCAGCGTGGTCGCCTTGTCCCTCTACATGTGCTATGAGTATGTGATGTCGGGCTGGGGGACGGGCTACACGTTCCACTGCGACCTAGTGGACTACTCGGACTCGCCGCAGGCATTGAGGATGGCTGGGACGTGTTGGCTCTACTACTTCTCAAAGTTCATAGAGATGTTGGACACAATCTTCTTTGTTCTGAGGAAGAAGAACAGTCAGGTTACGTTCCTCCATGTCTATCATCACTCTATCATGCCCTTTACCTGGTGGTTTGGGGTCCGGTTCGCTCCAGGTGGCCAGGGGACATTCCATGCCCTGTTGAACTGTGTGGTCCATGTCATCATGTACTCCTACTACGGCCTGTCTGCCCTGGGCCCCGCCTACCAGAAGTACCTCTGGTGGAAGAAGTACCTCACCACCATTCAGCTGatcCAGTTTGTGATCGTTACCACCCACATCTGGCAGTACTTCTTCATGAAGGACTGTCCCTACCAGTTCCCCATCTTCATCTACATCATTGGCCTCTATGGCctggtcttcctcctcctcttcctcaactTCTGGTACCACGCCTACACCAAGGGCAAGAGGCTTCCCAAGGTACTTCAGGCCAAAACCTGGGCCCACCCCTACAACAAAACCAACGGCGAAATAACCAACGGGAATGGTTTCCACTGTGACAAGGATAAGTGACAGGAGATCAGTCAATCAGGCTCAGGATCAAGGGTCGATCTCATTTGAATATGAGCCTATTCATGAACTGAAATGGAATTATAAACATGGAATTTATAATTTAGAGtactggggtgtattcactaggaaccaaacggaTAGGTACCTACGTGAATTTGTCTAATAGAAACGGTATTTTTCCATTTGGCGTAAACGGTTTCCATTGCAACAATTTTTGGACTAATGATTTCATCCCAGGTTAGGTATGCAGGAGTTTGGTTTTCCAATATAAAAGTCAGTGCACTATTGAACTCAAAGAGAATTGACCCCTCACCTCTGGACCTTCTGATATTGTtcttttctctctgctacagcaatCTCTAAGAGTTATGAACCGAGGCTCTACTGGACTTTTTGTATTAGATATTTTAAACTTTTATACCTGTGCTTTTCTTTCCTGTTCAGGATGAAAGCACAAGTTcagtgtttttacattttttataaacagATAGTTGATGTTAGACGTGTGTTAGGTTAGCCAATGTTGGGGCAGTTCAGTAGCTTTGTCCCCACCAGCCCAAATTACCTTTGCCGTTTAGAGTTGGTGCTGAACCTCTCTAGCTTAGGCTGTAGAATTCAGCTTTATAATGTGACCTTGATTTCAGCTGGTTTCTATATTTCAATACCTgtactttaaaaaataattttaatacattttctatgCATTTAATTGTAAACAATTTGTATATTCTGCTACTGAAAGTGTAGCAGGATTTTGTCTGTCTTGAGTATGTGAGCCATCCTCCATAGTTGAGGCCTGATGTATTTCCTGGGTCTGGTCACATGGCtgggaaaaactctgggccctaccCATAGTATACCTGTAATGGTGGAAGGATACAGGATAACAATTTTGCCAGTAAGAACCGATGTTTACATGTATACTGAGTGGAGTGTATTggtgttgacccccccccccccccccccccaccttttcATCAATTCTGCACCCATTTCTCTCTGGTTTGAGTCACAGCCTCTACTGGTGCTGAGAAACTTTGGAAGCCAACCTGCTCCTACTGTTAAAGAGCTGTAGGCCTACTTGAATCTCATTGAAATCTGTCTGTATTATGTCCAACAGAAGTGACGGTGTGACATTTGAAGCCAGAGAGAAAAGTGTAGCACTGTTCTTGCAGGGACCGGAGCAGAGTGCACATTTCGCTTTAGCTCTGTCGCAAGCAAAGaacgacacatttaaaaaatatataaaaaaaactgtagCCATTGTTTACCACTGCATGCATATTCGTTTTATATCCACTCTTCCAAATTGAGTTCAGTCCTTATGCCATGCGAATGACAGTTAGTATGCTTTCTCACTGGGTGTGTTCACATTTGTTTTTCGCCTTCGAGCTCTGCTCAACTGAGGACACAGCATTAGCTAAGTGTAGGATGGGCCTCCACAGGTGTAGTATAACCCCAGTGCCTGGGGTGTAGGCTGAGTCCAATAAGCAACAGCGATCTAGCTGATTTGAAATGTATTTGCTGATGTTAGCTCTAGTGTGAGCGTGTTATCCACCATGGGTTACTGTTCAGTGCCTTTGTCTAAGCCCCTCCAGCCATGATGCCGCTAATTTTGTATAAAAACAGTAATGTGTAAAgtaattatttttgtatttatataaaaataaatgctGTTTTATACATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU574269 lncRNA upstream 17210 39716391 ~ 39717493 (+) True G505827
TU574244 lncRNA upstream 63251 39671153 ~ 39671452 (+) True G505803
TU574233 lncRNA upstream 66898 39667254 ~ 39667805 (+) True G505795
TU574128 lncRNA upstream 146933 39582011 ~ 39587770 (+) True G505697
TU573743 lncRNA upstream 203512 39435988 ~ 39531191 (+) True G505333
TU574300 lncRNA downstream 14788 39764968 ~ 39765533 (+) True G505857
TU574311 lncRNA downstream 22633 39772813 ~ 39776463 (+) True G505865
TU574328 lncRNA downstream 39986 39790166 ~ 39864875 (+) True G505882
TU574405 lncRNA downstream 158193 39908373 ~ 39911925 (+) True G505955
TU574412 lncRNA downstream 174715 39924895 ~ 39925184 (+) True G505962
XM_036980092.1 mRNA upstream 56438 39673964 ~ 39678265 (+) False LOC110525927
XM_021606445.2 mRNA upstream 56438 39673967 ~ 39678265 (+) False LOC110525927
XM_021606447.2 mRNA upstream 56438 39676872 ~ 39678265 (+) False LOC110525927
XM_021606441.2 mRNA upstream 151276 39536644 ~ 39583427 (+) True pgm5
XM_036980089.1 mRNA upstream 198914 39533936 ~ 39535789 (+) True foxd5
XM_021606456.2 mRNA downstream 132597 39882777 ~ 39901525 (+) False LOC110525933
XM_021606457.2 mRNA downstream 132607 39882787 ~ 39901525 (+) True LOC110525933
XM_021606459.2 mRNA downstream 165958 39916138 ~ 39921723 (+) False LOC110525934
XM_036980094.1 mRNA downstream 165958 39916138 ~ 39921723 (+) False LOC110525934
XM_021606458.2 mRNA downstream 165962 39916142 ~ 39921723 (+) True LOC110525934
TU574236 other upstream 54672 39674012 ~ 39680031 (+) False LOC110525927
TU574237 other upstream 54672 39674012 ~ 39680031 (+) True LOC110525927
TU574234 other upstream 56440 39674012 ~ 39678263 (+) False LOC110525927
TU574235 other upstream 56440 39674012 ~ 39678263 (+) False LOC110525927
TU573608 other upstream 422829 39269959 ~ 39311874 (+) True fancc
TU574449 other downstream 212472 39962652 ~ 39963098 (+) True G505988
TU574576 other downstream 446620 40196800 ~ 40203886 (+) True G506095
TU574667 other downstream 506887 40257067 ~ 40259050 (+) True LOC110525949
TU574816 other downstream 794683 40544863 ~ 40547513 (+) False G506281
TU574820 other downstream 815887 40566067 ~ 40566429 (+) True G506285

Expression Profile