RNA id: XM_021606456.2


Basic Information

Item Value
RNA id XM_021606456.2
length 4774
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC110525933
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39882777 ~ 39901525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTATTTTAATTGTTCCAATGGATGGCGCTGTTCTACATGAAGGCGCGCTTTCACTACAGCGGTGGCTTGCCGTCTCACCCTCAGTCACAGTTATTTGTATGAGTTCTACAACAGGGAAGGGCATGGTAGTATGGACTGAAGTTTGAAAGGGTGACAGAGTGAGATCTGTAGCGATGGAGGATTTCTGGGCCATGGTCCTGGCAGGGCTGAAGGTGTGGGTCTGCCTCATTGTGTCTCTTCTCATGGTGCCTGCAATGTTTGGCTTCTCCCTGGGCATCTCCGAGACATACATGAAGATCCTGGTCAAAATCTTGGAGtgGGCCACGTTGAGGATCcaaacagtcaacaaagagcagCGGATAATCCAATCCTCCTCATTCAATAGCCTCGTCCAGAGGGAGGATGGTTCTATGGAGGAGGAGCTGAGGGGGTTAAGGCGCAGTCGCCCCAAACCACCAGTGGGGGGAGACTTCACCCTCAGCGACTGTTTCTACTTCTACAGACGAGGCATTGAGGATATCGTAGAGGATGAGGTGACCCAGCGGTTTTCGTCAGAGGAGCTGGTGTCGTGGAACCTGCTAACTCGGACCAACATCGACTTCCAGTACATCAGCCTCAAACTGACTATGGTCTGGGGCCTGGGCGTGTTCATACGCTACTGCATCCTGACTCCGCTCAGGATCATGCTGGCGTCTATAGGCCTGACCTGGCTGGTGATAGGAACCACTGCTGTAGGATTCCTCCCTAACTGGAGgCTCAAGTCCTGGCTGAGTGAGTGGGTCCATGTGATGTGCTACAGGATCTGTGCTCGAGGCCTCTCCTGCACCATCCACTACCACAACAAAGAAAACAGACCCAGAAAAGGAGGAATCTGTGTGGCCAATCACACCTCCCCGATTGATATTGTCATTCTCTGCAACGATGGGTGTTACGCCATGGTGGGCCAGTCACATGGTGGTCTGATGGGAGTGCTGCAGAGGGCCATGGCGAGGTCCTGTCCTCACATCTGGTTTGAGAGAGCTGATATGAAAGATCGCCACCTAGTGACCAAAAGGTTGAGGGATCACGTGAATGACAAGACTAAGCTTCCTATATTGCTCTTTCCGGAAGGGACCTGTATCAACAACACATCTGTCATGATGTTCAAAAAGGGAAGTTTTGAAATCGGAGGAACGATATACCCGGTAGCCATCAAGtaTGACCCTCAGTTTGGGGATGCGTTCTGGAACAGTGCCAAGTACAACATGGTGAGCTACCTGCTCAGGATGATGACTAGTTGGGCTATAGTCTGTAACGTCTGGTACCTGCCAGCCATGCACCAACAGGAAGGGGAGGATGCTGTCCAGTTTGCCAACAGAGTCAAGTCTGTCATCGCACATCAGGGGGGACTAGTGGACCTGTCCTGGGACGGAGGCCTAAAGAGGGCTAAGGTGAAGGACACGTATAGAGAGGAGCAGCAGAAGAAGTACAGCAGCATGGTGGTGGGTAGCGAGGAGGACCGCAGCGGTAACAGTGACTGACACCCTCCTCTAACCTGTGAAAAGGGCAGCTCGTTCTCGAGCAACCTACATCGCGACCGCTGGAGACGGGAGTTTTACTTTGGCAGTGGTCGCGTCGCATTTCGGTTTCTCCCATGATCACGCAGCGTGAATACATTTAGCTTTCACAGTGTACAGAAGGTGGGCGTAGGCCCATCCAAAAGCTCTTATCTGGGAGTTTGGAAAGGAGCTTGGCCATCACTGCCTGAATACTGCACTGCTGACGACCCCGGACTAGACTGCCATCGAGTGAATGAACCGTTTTAAAGTGCGTTGCGGACTGTAGAATGTTATAACTGATTAGCCAATTGCATTACAATTACTCTCGTCTACTGTGACAACACAGTGAAGCGGAACTGTAAAGGAGATGAGGTGTCAGGTCCAATAGCATCCGTTTGGGATTTTGAATAGCTCTTTCTTGTTCTGCTATAAAACACTGTTCTAATTCTCTGCTGGAAAATTACTATAAAATCCTGTGTTAAGACATGAGAATCAATGGATGACTTTGTGAATAGTGCAATTGTGACTGTAGAGACTTTTTGATCCCAAACTTCTAAATGTCAGTGTTATGCGACGACTATCTGAGGTTATTTTATTTTGTCTTcgtgtttccccccccccccccccccccccccccttttcgtTTATGATTGTATGAGCTGCTGAAACGTTCAGAGCCAGTTGATCAATCCTGTCGATCAATCATTACTGCTAATCGTTTGGAAATAAACATGAGCCCACAGCTGTTCTCTCTTGCTTTAGTGGCGTGTTCATTAGCAAGCTAAGCTACCAGAACAAGGTAGTCAGAATCAGGAAAAACACTTGTCAGTTGACGCTTTGAAATGATTTGCTTACGGTACTGTTGACACGAGTCGTACATAGGTTATGAAAGGGAGCCAAACAGTACAATAATAACAAAAGGCGATTGTTCGGTAGGCAAAGTGACAGGCATGGATTGCAGTTACACAGTCATTCCCCTCAAAACATatattctccctctccctatgtTGTTTCTATGATTCATCACAGTAACAGGCAAGGAAGAGAACTTGGGGTGATCATAACGACTCGATACGATGGGATTATATGGCACTAAGTAGAACGTGGTGTTGGGCATCCCATTCATAGTGCTGTGTCTCTAAAGAAGGGTACATGTTTGGGATTTTTTCGAGCTCTTCTCGTTGGTTTGTTTCCCTGAGGTTTTGCCTTCGTCACTGCCTCCTTTCTTCTGTTGCGTGTTAGGATCTCTGCTCGCACCTGGAAGAGTTGAACCAATTTAAGTCATTCATATTTCGGTAAAAATGTATGTTAACACTAGCATATAAGGTGCAGGAAATTCCCTCTTCCTTACTAACTTACCGGGTGAGAAAGTGTCCATGTTCTCTCCATCTGGACCAGCACGGTGTTGACTGGTATCCTGCTTTTAGATTAAGCAAATGTTATTTAACTACGtgaaaacacacagaacaacatctAACGTGTTGATGTATTGCATCAGTTcatgtaaatgtactgtatatttggcCTGTTATTAACAATGATGACACTTACCCCCAAAATGGTGCTATTGTGCTCTTTCTTCCATGCCTGGCTTTCCAGATGCCTGTTaacatcagatcagatcagatgtAAGTGTACTGTCGCTACCTTGCAGTCCAACCAAGGTGCACAAGTAATTGAAGACAAACTGTGCGAGAGAAATTCTATCATTGTCTGAGGGAAGAGCTTGACCAGTTGAAACATTAAGGAGCCTGTTTAGTGCCTGACGTTCCTACGTCCTGCTGCATAGTTCACATGTAAGAGAGGGTACTATCGGATGGACGGTGAGAGGCAGCACTAAAACAGCTTTTGTTGACCAGCAATAAAATGCCTTCAGATGATAACAGCAAAGTTATTGAAATAGCCTAAAATTATGTGATGCATGAATTCATtgcattttttatatatttttttttactattgttCTTAATGTTAATTGTAGCGGACACATGGACATGAATACAGTATGGTGTGTTTCATGAGGATGCAACATTTGTTTTCAACCAAGATGTCACTTTAATTCAACAGAGTAAAGATCAATCCACCCACCTTCTTAAATAGGAATCAAAGTTCTTGACCGGTTTTGCCTCTTTCTTCACCCCATCTGGTGTCCACGCTATGGATGTATCTATCCCCACATCTACTCTACCCTCAGCTCCAGAAGATATAGGCATCTCTGCTTCTTCTGCAACAACTACATCTCACACGGCAAAAAACGACAAAAATCTTACAAACACCTAACCGTAGGGACTTAGAAGCAGGGACTTAGGTAGCTTGTATCCCCAGCCTGGCTTACAAATTTGGGTGAACCTtgtctctctagctctgtttGACCAATAGATGTGGTGGCTGTTTGGCAGTGGAGTTAACGGGTTTGTTGTTGTATCCACGGCAACCGAGGCCTAAATGACTGGaaccagagccatatatttagaATTGTATTCTAAATGCATAGCTCTGACTGGAACTACACAGGCTCATTGCAGTGTGCCCTTTCTCCTGGATGCACCTTACAGATCACATTTGGggtattaaaggcccagtgcagttaacaatgtgatttttctgtgttttagaTATACTGTAATTCCACCCTGAGGTTGGAATaatctgtgaaattgtgaaaatgatgataattcccttttagtgtaagagcctGACATTTCTGGCTGTTTTGGTGGGATAGAGTTTTTTGatctgcctggtgacatcaaaaGGCAGATCAtcacagctagttttcagttttcccctccccactcagaccactcccagacagtcctagcaaaattcttgcttgagaaattgctcttgcgAAGAAACTATTTTTGTTTCGTTTTGACTATTTTAATTGTTTTCAATCACAGCAAGGTACCTAATTGTgtcccagaaatgatttgacattgatataaaaatggctgcattaaACCTTTAATCTAAATCGTGCTGTGTTTGAGGGGGAGATGgatgatgtggggggggggggggggggggggtaattagGTTTACTTGAACATGTTTTGTAGTGGTTAAGTGTAGTTTGTGAGTGTTCTGGTCCCAGTATCGGCAACAGCTGTCAGAAACAAGAGTTTGTACGACTGTAAAGAGGACAACACTTTCATTCAACTGTGCGATAGTACAAATACTAACTGTACTGTATCTAAATGTAACCACaaataaacataaacattttacaGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU574328 lncRNA upstream 17902 39790166 ~ 39864875 (+) True G505882
TU574311 lncRNA upstream 106314 39772813 ~ 39776463 (+) True G505865
TU574300 lncRNA upstream 117244 39764968 ~ 39765533 (+) True G505857
TU574269 lncRNA upstream 165284 39716391 ~ 39717493 (+) True G505827
TU574244 lncRNA upstream 211325 39671153 ~ 39671452 (+) True G505803
TU574405 lncRNA downstream 6848 39908373 ~ 39911925 (+) True G505955
TU574412 lncRNA downstream 23370 39924895 ~ 39925184 (+) True G505962
TU574427 lncRNA downstream 39638 39941163 ~ 39941755 (+) True G505972
TU574443 lncRNA downstream 57343 39958868 ~ 40010338 (+) True G505984
TU574468 lncRNA downstream 74941 39976466 ~ 39982658 (+) True G505997
XM_021606448.2 mRNA upstream 132597 39734703 ~ 39750180 (+) False LOC110525928
XM_036980093.1 mRNA upstream 132597 39736927 ~ 39750180 (+) False LOC110525928
XM_036980092.1 mRNA upstream 204512 39673964 ~ 39678265 (+) False LOC110525927
XM_021606445.2 mRNA upstream 204512 39673967 ~ 39678265 (+) False LOC110525927
XM_021606447.2 mRNA upstream 204512 39676872 ~ 39678265 (+) False LOC110525927
XM_021606459.2 mRNA downstream 14613 39916138 ~ 39921723 (+) False LOC110525934
XM_036980094.1 mRNA downstream 14613 39916138 ~ 39921723 (+) False LOC110525934
XM_021606458.2 mRNA downstream 14617 39916142 ~ 39921723 (+) True LOC110525934
XM_036980100.1 mRNA downstream 245811 40147336 ~ 40154986 (+) False LOC110525942
XM_021606470.2 mRNA downstream 245813 40147338 ~ 40154986 (+) True LOC110525942
TU574282 other upstream 134297 39734784 ~ 39748480 (+) True LOC110525928
TU574236 other upstream 202746 39674012 ~ 39680031 (+) False LOC110525927
TU574237 other upstream 202746 39674012 ~ 39680031 (+) True LOC110525927
TU574234 other upstream 204514 39674012 ~ 39678263 (+) False LOC110525927
TU574235 other upstream 204514 39674012 ~ 39678263 (+) False LOC110525927
TU574449 other downstream 61127 39962652 ~ 39963098 (+) True G505988
TU574576 other downstream 295275 40196800 ~ 40203886 (+) True G506095
TU574667 other downstream 355542 40257067 ~ 40259050 (+) True LOC110525949
TU574816 other downstream 643338 40544863 ~ 40547513 (+) False G506281
TU574820 other downstream 664542 40566067 ~ 40566429 (+) True G506285

Expression Profile