RNA id: XM_021604925.2


Basic Information

Item Value
RNA id XM_021604925.2
length 2119
RNA type mRNA
GC content 0.49
exon number 9
gene id gk
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39906570 ~ 39911822 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGGTGatgaagaggatgatgagggagatGGACCGGGGACTGCGTGTAGAGACGCACCAGGAGGCCAGTGTCAAAATGCTGCCCACCTACGTCTGTTCTACCCCTGAAGGATCAGAAAcccctgctgtgtgtgtttgatcCTATATGACACCGTTCTGTGTGTTGCGCTGTGTCAGAGGTGGGTGATTTCCTGGCCCTGGACCTGGGGGGGACTAACTTCCGTGTGATGTTGGTGAAGgtgggggaggatgaggagaggggatggaaggTGGAGACCAAACACCAGATGTACTCCATCTCTGAGGACGCCATGACAGGCACGGCTGAGATGCTCTTTGACTACATTGCTGAGTGTATATCAGACTTCctgaacagacaacacatcaAGCACAAGAAGCTTCCTCTGGGTTTCACCTTCTCTTTTCCTGTACGACACGAGAACATAGACAAGGGCATCCTACTGAACTGGACCAAAGGGTTCAAGGCGTCTGGAGCAGAGGGTAACAACGTGGTGGGACTACTGAGAGATGCCATcaagaggagagggGACTTTGAGATGGACGTCGTTGCCATGGTGAACGATACAGTTGCCACCATGATATCCTGTTACTATGAGGACCGCAGCTGCGAAGTGGGAATGATTGTGGGTACTGGGTGTAACGCTTGCTACATGGAGGAGATGCGGACAGTGGAGCTggtggagggggaagaggggaggatgtGTGTGAACACAGAGTGGGGGGCCTTTGGAGCCAACGGAGAGCTGGAGGAGTTTAGACTGGAGTACGACAGGGTGGTGGACGAGACATCACTCAACCCTGGACAACAACTCTATGAAAAGCTGATCAGTGGGAAGTACATGGGAGAGCTGGTGCGGCTGGTATTGTTGAAGCTGGTGAACGAGGAGCTGCTGTTTAACGGAGAAGCCTCTGACCTGCTGAAGACTCGCGGCAGCTTTGAGACGCGCTACGTCTCCCAGATAGAGGGtgACTCTGGAGACAGGAAGCAGATCTACAACATCCTGTCTACGCTGGGCGTGTTGCCGTCGGAGCTGGACTGTGACATAGTGCGTCTAGCTTGTGAGAGCGTGTCCACGCGGGCAGCACACATGTGTGGGGCGGGGTTAGCCGGCGTCATCAACCGTATGAGAGAACGCCGCAGCCTGGCGGTGTTGAAGATCACTGTGGGCATCGACGGCTCCGTCTACAAACTCCACCcctgTTTCCAGGACAGGTTCCACAAAGTTGTGCGGGAGCTGACGCCTCACTGTGACATCACCTTCATCCAATCAGAGGAAGGGAGTGGCCGGGGGGCGGCACTTATCTCGGCAGTAGCCTGTAAGATGGCAGCGTGCATGCTGACACCCTGAGAGTCGTAACAGCCTCCCACCTATAGGGGGCGATGCAGGTGAACCAGGCTTAACTCTGACCTCATACAGTAAATTATACCTCATCTAGGGTGATCCAGCTCTGGCCTCCTCTTGAAGCTTTCACAGAGTAATCTGTAACTCCTCATTGGTGAGAGAAGCAATACGAGTGTGGATAACTCACTGTACATACAAATAACCccaccacacagcacacacaacATGGGATACACAGAGACAGATTCAATCATCACTTTTcccagtgtacagtattatacagatgTGTTTTTGAACTGATGAGCCTCTGAAAATTCCCTGCAGTCCCACAATGCATAagtggtgagtcccagaaagtAACGAACCCTTGTTTCAACATGTTCTCAAGCTTCCACTGATTGCAGGTATTTAAAGCTTGAttaataatgtaatataatgttaAAGGGAAAAAGATTGGCATTGATTTATAGCATCAGTATGTTTTTTAGTTGGATGCTGTCTGTTTAATCCAGAGATGTTACCGTATATAAATTTAAAACTAAGGGATTATCCCTTTCAAATGTGTTGCAGTGCAGTCTTTCACTTACTGTTCGTGGGAAATTAAATATTTATTTGATAGCATATTGATAAAAGTGATGTATCTGTGATGAGCGTAAAGGTCTTAATTCCTATGATGTATATCTAAGAATGATAATGTGCTTTGTAATGTGACCATTTTTTATTGTTGTAAGTAAAGTTGCTGTAACATACAAATA

Function

GO:

id name namespace
GO:0032024 positive regulation of insulin secretion biological_process
GO:0045721 negative regulation of gluconeogenesis biological_process
GO:0045725 positive regulation of glycogen biosynthetic process biological_process
GO:0046835 carbohydrate phosphorylation biological_process
GO:0051156 glucose 6-phosphate metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:0042593 glucose homeostasis biological_process
GO:0051594 detection of glucose biological_process
GO:0005524 ATP binding molecular_function
GO:0005536 glucose binding molecular_function
GO:0004340 glucokinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU575359 lncRNA downstream 1058 39905549 ~ 39905853 (-) True G506795
TU575198 lncRNA downstream 289620 39616938 ~ 39617291 (-) True G506639
TU574184 lncRNA downstream 299114 39607572 ~ 39607797 (-) True G505752
TU574180 lncRNA downstream 302520 39604097 ~ 39604391 (-) True G505748
TU574175 lncRNA downstream 306724 39599927 ~ 39600187 (-) True G505743
TU575369 lncRNA upstream 21614 39932520 ~ 39932855 (-) True G506802
TU575372 lncRNA upstream 36595 39947501 ~ 39947725 (-) True G506805
TU575373 lncRNA upstream 40793 39951699 ~ 39951922 (-) True G506806
TU575435 lncRNA upstream 137723 40048629 ~ 40048833 (-) True G506865
TU575436 lncRNA upstream 138397 40049303 ~ 40049566 (-) True G506866
XM_021606461.2 mRNA downstream 1504 39901532 ~ 39905407 (-) True LOC110525935
XM_021606454.2 mRNA downstream 28960 39826260 ~ 39877951 (-) False LOC110525932
XM_021604986.2 mRNA downstream 87484 39808201 ~ 39819427 (-) True LOC110525027
XM_021606453.2 mRNA downstream 101570 39790133 ~ 39805341 (-) True LOC110525931
XM_021606451.2 mRNA downstream 128373 39751726 ~ 39778538 (-) False LOC110525929
XM_021606462.2 mRNA upstream 24422 39935328 ~ 39946578 (-) True npc1l1
XM_036980095.1 mRNA upstream 47955 39958861 ~ 39983075 (-) True LOC110525938
XM_036980098.1 mRNA upstream 110813 40021719 ~ 40033534 (-) False LOC110525939
XM_021606465.2 mRNA upstream 110813 40021719 ~ 40033727 (-) False LOC110525939
XM_036980097.1 mRNA upstream 110813 40021719 ~ 40033727 (-) True LOC110525939
TU575349 other downstream 16980 39887022 ~ 39889931 (-) True G506785
TU575314 other downstream 68751 39837648 ~ 39838160 (-) True LOC110525932
TU575254 other downstream 142135 39763291 ~ 39764776 (-) True LOC110525929
TU575200 other downstream 282567 39623685 ~ 39624344 (-) True G506641
TU573926 other downstream 483421 39421668 ~ 39423490 (-) True aopep
TU575676 other upstream 629753 40540659 ~ 40542329 (-) True G507063
TU576563 other upstream 1510118 41421024 ~ 41461922 (-) True G507906
TU576567 other upstream 1524069 41434975 ~ 41439014 (-) True znf131
TU577033 other upstream 1909949 41820855 ~ 41821210 (-) True G508303
TU577652 other upstream 2233191 42144097 ~ 42144885 (-) True G508891

Expression Profile