RNA id: XM_021606458.2


Basic Information

Item Value
RNA id XM_021606458.2
length 3268
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC110525934
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39916138 ~ 39921723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACACCagcagggagtggggtcacagccactCCCATTGATATTAAGCCTACACGCAACACAACATGTTCCTATGCTTACTTTTTCACACCTCAAGCACAAGCGATCTGGAAGTAGGAACTGAACACAGAATTGTAATGAGGCCTTGTTGCATTCCGGAACAATTACCCTGTGGGACATTGCTTCGATCGTGACGTGGTTGGTGTTGCTAGAAAGAGACGAACTGGTCATAATACTGATAACATCCTACAGGTCGTTCACTAAGTTATTATGGAATAATTCAGTTGGTATTTTATTCTCAACAGTTAACAAACCATTTAGTGCAGTCTTCTCTGGCATTGCGACCTCTAGGCTGCTGCGCTGGGACACGCCAGTCATAGCCCTGGGACTGTCTGCGTCATCATGAAGCTGTACAGCCTAAGCGTTCTCCACAAAGGAGCGACTAAATCCAATCTCCTCAAATCCGCATATgacctctcctccttcagtttCTTCCAGCGCTCCAGTGTCCAGGAGTTCATGACCTTCACCAGCGCCTTGATTGTGGAGCGTTCTGCACACGGCAGCCGAGCCTCAGTCAAAGAACAAGAGTATCTGTGCCATGTGTATGTGAGGAATGACAGTCTGAGTGCGGTGGTGATAGCAGACAGCGAGTACCCCCAAAGAGTCGCCTTCACACTACTAGACAAAGTGCTAGAGGAGTTCTCCAGGCAAGTGGAAAGTATAGACTGGCCATCTGGAAACCCAGACACCATCAACTACAAAGCCCTGGACATCCACCTGGCCAAATACCAGAACCCCAGAGAGGCAGATGCGATGACCAAAGTGCAGGCTGAGCTAGACGAGACAAAAATCATTTTGCACAACACCATGGAGTCTCtgttggagagaggggagaagctgGATGACCTGGTGCAGAAGTCTGAACACCTGGGGAACCAGTCTAAAGCCTTTTATAAGACTGCACGGAAGCAGAACTCATGCTGTGAGGTCATGTGATGTTGCTGACTGTCCTCTTGGATATCTCTCTCTTGGCCTTTCTGCTCATTCTACAACTTCCATCGTGCCCCAGCCTCCAGGAGACCGAATGGCCTCCACTCAGTCTCTGGGAGGGAGCAGGGGAGGAAGGATGTGGGATCTCTGGAATTTCTTTACATGCTtactggggaagaggagaggatgtgGGGCTGCAGGACTGGTGGGGTTTCATCAGGAAGATATCATACGTATTGGCTTCATTGTAACAGTTCAAAAGGTGTTTTGAGGAGGTTCCTAGCCAGCCAGGACGTGTTTGTTGTTCAAAATGTCTTAAACCGTTTCCTGAATTCAGACCGTATCAGAGTCTTAATCTGAGTTTGAACTCAGCTTTCTGGGAGTTTTCATCTTATGCTTGGCGTTAAAGAAACCCTGACAATCTCCCTCTGTACTCATTGCAGTAACTCACAGGATCTGCTGGTGATCTCATTAAGGTCTGGTATTGACATTTTATTTCCTCTGCCCTGTAGATGACACGGTTTCCTCACATTCGTGGTTCAGGGCCTGAGACAACAGAACTCCATGATCAAATCCTCTTGAGTTTGTTTTCAAAGCTCATTTCTACAGGACATTAATTGGATTAGTGTTTTGATTATGTAACCTAATCAAAACAACAATATGTAACCCATTGATGTTTTGTTGTTCTCTATGAACACGTGAAAACTTTGAAACATTCCCAGGTTTTTCAAATTCATAAAAGTTGATTGGTATTGTAGCACAAGCGGGTGAACTTATGTTGAACTAAAATAGGGTGACCTGTACTTATAGAGCATTGTGTAGTGATGTCTACAGATTCTCATTGATAGACAAAGCCTTATTAAAATATGGGGTTAGATTGAAGTCCCCCTACGTATGAGTATGTGTTTGGAAAGTGTCCTATTGGAGGGGCTCTCTGACTTTGTAATCCTTCTAAAGCTGTTGTGTTTCTAGACTGGACAAAGGCTTAAGACATGGCACACAATGAATCAGCCACGACCCACCAATGGGTTTTGCTCCACCATTAGGTGTTCTACTGCAGCCTTATGTCTGCAGCTCTGCCCCCTGTTGGCAGTGTGAACATACTACATCTGGATTGGATTTCAATTCTAACTGAATGATCATGACAACACATGTTGGGTAGTTAACTTCACTTTTGGAACAAGGAAATTACTACCTGAGGTTATTATTTCATGGTGAGCAATGCTTCTAATGTTGCAGGTAGAAATGTAATGTATAGAACAGACAATATTCCCTTTTCAGCATAACACAGAATCGTGTGCGTTTTACAAATATTTCAATCAATGTATTCTGTTTCATTTAACAGGCTCAGCTTTGGGTGCACAACACACTCACAGATCACTCATTTTGTTGCGCTCAGTATTAAACATACCCATTTGATTTTCTTTTTTTAGCAGAAATGGCTTCAGGTTGTCATTGTGTTTCCAGACCCCAGCGGATATGTGAGATAAAAGCGAGGCCTTTGATATTTTAGATGTAGTGTATCTTGCTGCCTTATTTTGTGTGTATGacctggttgtgtgtatgtgtaattgtTTGTGACTGTGTGCAAAGACATAATTAGTCAGACTTTAACTGCTCTTATTGCTTTACGTCACAACTTCTGTGCAATCGTAGGCTGACTATATTCTCTCCAGATAATGTTTTATCTTGAAACCTGTTTAATTTGAGTAGGGAAACAGTTCATTTGACCCCAGTGTTTCCAATGAAAGATACTTCTACGGCAGCACAGTCCTACTTTAATTTCCTCAAATGTTTTTGTTAACCCTGCTTTTTGGTGTTAACCAATGATTTATATAGGCTACATTAGATGACTGACGGAGCGCTGTTTTGACaccaccgtgcctccatcttggcactcccccactATTGTAAAAAAGTTAAGCTATagaatgtctacatttgtttttgtcacCTTTATTCTATTACAGTCCCCTTTTAAATGCAGGGATGGACAACTCCAGTCTGCAGGGGCCGAGTGATGTCACACTTTTCCCACAGCCTTACAAAACACAGCTGATTTAGCTAATTGCGTTTTAAACTGCAGGTCATGATTAGTTCATTATTGGAGTCAGGAGTGTTAAGTGTGACACCAATAaggcccctgaggactggagttgcccatccctgccttaatgcatactttaaaattatactgaacaaaaaatataaaaacgcaacatgtaaagtgttggtcccatgtttcatcagctgaaataaaagatcccacacagtttc

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08516 YKT6; synaptobrevin homolog YKT6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU574405 lncRNA upstream 4217 39908373 ~ 39911925 (+) True G505955
TU574328 lncRNA upstream 51267 39790166 ~ 39864875 (+) True G505882
TU574311 lncRNA upstream 139679 39772813 ~ 39776463 (+) True G505865
TU574300 lncRNA upstream 150609 39764968 ~ 39765533 (+) True G505857
TU574269 lncRNA upstream 198649 39716391 ~ 39717493 (+) True G505827
TU574412 lncRNA downstream 3172 39924895 ~ 39925184 (+) True G505962
TU574427 lncRNA downstream 19440 39941163 ~ 39941755 (+) True G505972
TU574443 lncRNA downstream 37145 39958868 ~ 40010338 (+) True G505984
TU574468 lncRNA downstream 54743 39976466 ~ 39982658 (+) True G505997
TU574491 lncRNA downstream 100012 40021735 ~ 40026395 (+) True G506019
XM_021606456.2 mRNA upstream 14617 39882777 ~ 39901525 (+) False LOC110525933
XM_021606457.2 mRNA upstream 14617 39882787 ~ 39901525 (+) True LOC110525933
XM_021606448.2 mRNA upstream 165962 39734703 ~ 39750180 (+) False LOC110525928
XM_036980093.1 mRNA upstream 165962 39736927 ~ 39750180 (+) False LOC110525928
XM_021606447.2 mRNA upstream 237877 39676872 ~ 39678265 (+) False LOC110525927
XM_036980100.1 mRNA downstream 225613 40147336 ~ 40154986 (+) False LOC110525942
XM_021606470.2 mRNA downstream 225615 40147338 ~ 40154986 (+) True LOC110525942
LOC118965025 mRNA downstream 238441 40160164 ~ 40165614 (+) True LOC118965025
XR_005052103.1 mRNA downstream 250597 40172320 ~ 40178096 (+) True LOC110525943
XM_021606472.2 mRNA downstream 263448 40185171 ~ 40191808 (+) True LOC110525945
TU574282 other upstream 167662 39734784 ~ 39748480 (+) True LOC110525928
TU574236 other upstream 236111 39674012 ~ 39680031 (+) False LOC110525927
TU574237 other upstream 236111 39674012 ~ 39680031 (+) True LOC110525927
TU574234 other upstream 237879 39674012 ~ 39678263 (+) False LOC110525927
TU574449 other downstream 40929 39962652 ~ 39963098 (+) True G505988
TU574576 other downstream 275077 40196800 ~ 40203886 (+) True G506095
TU574667 other downstream 335344 40257067 ~ 40259050 (+) True LOC110525949
TU574816 other downstream 623140 40544863 ~ 40547513 (+) False G506281
TU574820 other downstream 644344 40566067 ~ 40566429 (+) True G506285

Expression Profile