RNA id: XM_036980095.1


Basic Information

Item Value
RNA id XM_036980095.1
length 5373
RNA type mRNA
GC content 0.50
exon number 23
gene id LOC110525938
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39958861 ~ 39983075 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGCCTGTTTGTGGCAGTCTGCAGAGGGGAAAGCAGGCGGAAGAAGTGGAAGAAGTGCTCTGCTGCTGAACTAAACTCTCTTCACCTCTTCAACCAGGAGTTACAGCCTCTATAGAGCCAACCTGGATTCTTCATTCCCTCTCCTGGCTTCtccagtgagctgctctgctcaATCTATGCTGAGATCTCCTTttgatcactgcacctgttgaAACTCGTCAGCCAGGTGAAGGGATTATATCTCTCTCAGCCATAACTTTTTCAGCTGTCGATCCAGGAGAGCTGTGGATCTCGTTTAGTTAAATTGCAGGACAATTGGActgctctccctcgctcttcctccctccctcactattTTCTTCTCTCTGTGTCCAGCCCTGCCTCATGCTCTGAGTGAGTCTGTGTCTGGCTGTGGCTTGGAGCTCCAGAATCTTCCTGACCGTAGAGAAGACATGGAACACTAGAGTAGAAAACTGAGAGGTAGAATTCTGGGGTAGAATTCAGATATAGAACACTTCGGTAGAATTTCTGAGTAGCGTTCTGAGCTGGAACTTTTGGCAAGATTTTGGGAAATCAGAGCTGGAATACTTAATCGGAACACTGAGCTGAAACTTTTCAGTGGAACATTGAGGTAGAATCCTGAGGCAGGTAGAATAAGGAGGATGGGAGGTCATACTGCAGTGGTGTGTTTGGTTCTGCTGGCCATATGCTGTGTGCTACTGCCCAAAGCAGGGGAGAGTGCAGGAGGCATTGTCTCTTTAGGCCAGgctgtagaggagagagggatggaggcccTATATGGAGAGGAGTCCCAGAATGAACCAGCTAAAGAAGAGGAACTCACAGAGACACAAAGCCAAACTAGCAAGGAAAAGAGAGCCACAGAGGAGGATGCCCTACCAGCCAGGGTCAGAAGAGCCGAAGAGGAGGGCAAAGGGAATAAAAAGAAGGCCAAGAAAGACAAGAAAGACAAGAAGAACAAGGAGCCCAAAGTGCCCAAGGCCACCAAGAAGCCTAAAGCAGACAAAAAGCCAAAGAAGGGCAAAGGAAAGGAGCCACGGACAGAAGCACCTACAACAACTCCACCACCTAcaactaccacactaccacccaCAACTACCACACCACCACCTACAACTACCACAGAGGTCTACACAGAAGCAGCTCCCACAGAACCTGACCCATACCCAGACTACCCCTACACAGACAACGAGGATGACTACTGGAAGCCAGATGAGGAGGAGCCCGGAGGCCCAGTGGTCGACCCAGAAGATGACTATTGGAAGGGAGAGAACCCAACGGCCACGCCCCCCACTCTTGTGGTGGATGGAAAGGTGGACAAGGGAGACGAGGACTACTGGGACGCCAGATACGAGGTGCCCGAGAATCTTCCTTTCCCTGATGGTACAGAGGTCGTCCCCAAAGAGAAAGATGACTGGAGCTATGCTGTTACAGAGGAGCTTGTTACACCACCACCCACCTATGAAAGCCCATGGTACGAGGAGTATGACTACGGGCACAGTGGTGGACAGACGAAaaaacaggaggagagagagatccaaaggagagaaaaggagcgAGAGGATAGAGAGAGAGCTcagcagaggagggaggaggaagagagggccaAAGCCAAGAAGAGACCACACGTATTCAAGGAGCCCAAAAAGTGTCCTCCCCTGGGTATGGAGTCTCATAGGATAGAATCAGACCAGCTGCTGGCCTCCTCTATGTCTCACTACCGCTACAGCCAAACCAGGGCACGACTCAACATacaggctTCGGATGATGAGGAGGACATGCATGGTGGGGCGTGGTGTCCTAACCCAGAGGAcaatattcactggtttgagatGGACGCTCGCAGAGCAACAGAGTTTACTGGGATCATAACACAGGGACGAGACTCACGCAACGAGAGTGACTTTGTGACATCGTACTACGTGCAATTCAGTAATGACAGCAGAGAATGGAAAACCATCCATGACGGTTACTCTGACTGGttgTTTTTTGGTAACTCCGATAAGGATACCCCTGTGCTGAATCAGTTAGCTGAGCCCATACTAGCACGCTACATCAGAGTTATCCCTCAGAGCTGGAATGGTAGTTGCTGTATGAGGCTGGAGGTACTAGGATGCCCACTGCCTGACCCCACCAGTGCCTACCAGAGGCTGCAGAACGAGGTGACTCCAGTCCAGTACCTGGACTTCAGACATCACAACTACTCAGACATGGTCACGATGATGAAGTCCGTGTCTGAGGAGTGTCCCAACATCACCAGTATGTACAGCCTGGGTCGCAGCTCCAACGGACTGGACATCCTGGCCATGGTGATATCAGGCAACCCCACAGAACACGAGATAGGTGAGCCGGAGTTCCGCTACACGGCCGGTCTCCATGGAAACGAGGCGACGGGGCGGGAGATGGTTCTTCTTCTGTTGCAGTACCTGTGTAAGGAGTACAATGATGGCAACCCCAGAGTGCGCCGCCTGGTGGAGGAAATACGTATCCACCTGGTGCCCTCACTCAACCCTGATGGGCAGGAGAAGGCCCTGACAGTGGGTTCCGAGCTGAGTGGTTGGACAACAGGCCACTGGACGGAGGACGGCCACGACATCTTCCAGAACTTCCCAGACCTGAACAGTGTTTTGTGGGAGGCTGAGGACAAGGGCATGGTGCCCAAACTGATCCCCAATCACCATGTCAAGATCCCTGCAGATCAAGAGGGGGATGACAGGATTGCTGTGGAGACTCGAGCCATCATCTTGTGGATGGAGAGCCACCCATTCGTACTGGGGGCCAACTTCCAGGGGGGAGAGAGGTTTGTGGCGTACCCATACGACAATCACCACCTAACCAAGACCGCCGGCACCAGCAccagagagggcaagagagagagggcacagAGTCGCAAGAAGAGACAGTACGAGGAGTTTGACGTGACGGCGTGGGGGAGGGACTACGACCGCGAGGAGCCGGAGGAAGACGATAGAAACAGGGGATACCAGCAGCCAGAAGAAGACCAGTGGAACAGGGGATACCAGGAGCCAGAAGAGGACCAGTGGAACAGGGGATACCAGCAGCCAGAAGAAGACCAGTGGAACAGGGGATACCAGCAGCCAGAAGACCAGTGGAACAGGGGATACCAGCAGCCAGAAGAAGACCAGTGGAACAGGGGATACCAGCAGCGAGAAGAAGATCAGTATAACAGAGGATACCAGCAGccggaggaggagtggaggggacaTGGCTATGGCCacagggaagaggaggatgacagagggagaggggaggatgacagagggagaggggggtacgCAGAGCCTGAGGATGAACCCAGGGCCACAGCAGACGCCTCCTTTTTCAGGTGGTTGGCCATCTCTTATGCCTCTACTCACCTGTCGATGACATATACTTCCCACGGCTCCTGTCACGGCAATGACATCACTGGAGGCGTTGGAATCGTCAATCGCGCCAAGTGGCAGCCCGTCACAGGAAgTATGAATGACTTCAGCTACCTGCACACTAACTGTCTGGAGCTGTCAGTGTTCCTTGGCTGTGATAAGTTCCCCCATCAGAGTGAGCTGGTCATTGAGtgggagaagaacagagaggccATGCTCACCTTCATGGAGCagGTGCAGCGTGGGATCAGGGGCGTGGTAAAAGACAATGAGGGGAACCCCATCGCTAATGCTACAGTTTCTGTAGAGGGGGTCAACCATGATGTCTCTACAGCTGTAACAGGGGACTACTGGCGCTTGTTGAACCCAGGTGAGTACCGTGTGACGGTGCGGGCAGAAGGCTTCGCCCCCCTGACCAAGCTGTGTGTGGTGGGCTACGAGGCAGGGGCAACTACCTGCAGCTTTAACCTGGCCAAGTCCAACTGGGACCGCATCAAACAAATCATGGCCCTGCACGGCAACAAGCCCATACGCCTGCTCAGCCACGGCAACGGCGGAACAAGACAGAACACGGTCTCCAATGGCAACAGGGATGTGGGGCATCCCGACGGGGTCTCCGCCATAGATCCTAATGTGCGTCGCAAGCAAAAGCAAAAGCTAGAGTTCGACCGCCGTCGTCGTCTACGGCAACAGAGACTGATGAGATCGACAACAACGTTGCCCCCGACGACCACGCCGGTTCCCATGACAATAGAGGCGGAGCCCACCACTGCTTGGTACGACACGTGGTTCATAGGAGAGGGGCAAACGTCGGCACCGGAAAGTTTCACGGACTCCATCTTGGATTACAAATACGAGTACAAGATCGACGATTACTAAGCTTAAACACCAAGGCCTTGTTCAAATACATTTACAATACATCCTTCCTCCCCACTTCCTTTGCACTCTAAGGTATTTGAACAGGAACAATGTCATAGGCCTGAGCCCAGGCTGTTAACTCAATTCTTAGAGTAGACAACTAAGTGACCCCTTAAAGGGATATTTGGCAATgatgccctttatctacttccccagagtcagaggaACTCgtagataccatttttatgtcgcTGTGTCAAGTATGAAGGAAGTTCGAGTTAGTttcgcaagccaatgctaactagcattaacacaataactagaaagatgctagcagatacccatagacttccagtcattgcgctaaagctagttagcaattgttaagaacttccttcaaactgcacacagatacataaaaatggtatccacgagttcatctgactctggggaagtagataaatcccaaagtatcccctTAAAGAACTGACAGGTTCTTGAAACTCCAATAACTCTGGAAGCCCCCCAGCCATCCATTCTTTCAGATCAACAAAGGGGCCACAAGAAGTGTTTAGGTATATCTGCAAAAACTGATCAAAGGAACAATGCAGTGTTGAATGCAAAAACAGTCAGGCACACAAGCTAATGCCAGTGGTCTGTATAACTGCTCGAGTAGGTATTTTGATACAACgttaacacacacaaaaatgtaAGTTTAGAGTAGAAAAATAGAACCACTGATATCTGGAAAACACATTTTATACCAATTCAATTTGAAAAGTTGTTGCAAAGCTTTCCTGGAGAATGTACTTCAGAGATCATGTAGATCTGGTGGTTGTAGATTACGCACTTGTTTTACTATCACCTCCACCCTTGAAGAGTCAAAACAAAGAATCAAAGTTTCTATTTTTCTTATAAATTGTGGATTCATTTACATTATTTTCACACATTGACAGCAAAGTCATAATATCGACATACAGTAACTTGACAAAATGTTTGTTGAATAGTAAGAGAGAAATCAAAAGAGATTTCCTTAAATGTTCCTCATAATTTAGCTGAGGTAGAGGAAAGACATTTTTTCAATTAATAAAGGCTTGTTTACATACAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU575373 lncRNA downstream 6939 39951699 ~ 39951922 (-) True G506806
TU575372 lncRNA downstream 11136 39947501 ~ 39947725 (-) True G506805
TU575369 lncRNA downstream 26006 39932520 ~ 39932855 (-) True G506802
TU575359 lncRNA downstream 53008 39905549 ~ 39905853 (-) True G506795
TU575198 lncRNA downstream 341570 39616938 ~ 39617291 (-) True G506639
TU575435 lncRNA upstream 65554 40048629 ~ 40048833 (-) True G506865
TU575436 lncRNA upstream 66228 40049303 ~ 40049566 (-) True G506866
TU575406 lncRNA upstream 72961 40056036 ~ 40056934 (-) True LOC110525940
TU575468 lncRNA upstream 175966 40159041 ~ 40159271 (-) True G506894
TU575471 lncRNA upstream 180109 40163184 ~ 40163407 (-) True G506897
XM_021606462.2 mRNA downstream 12283 39935328 ~ 39946578 (-) True npc1l1
NM_001124249.2 mRNA downstream 47039 39906570 ~ 39911822 (-) False gk
XM_021604925.2 mRNA downstream 47955 39906911 ~ 39910906 (-) True gk
XM_021606461.2 mRNA downstream 53454 39901532 ~ 39905407 (-) True LOC110525935
XM_021606454.2 mRNA downstream 80910 39826260 ~ 39877951 (-) False LOC110525932
XM_036980098.1 mRNA upstream 38644 40021719 ~ 40033534 (-) False LOC110525939
XM_021606465.2 mRNA upstream 38644 40021719 ~ 40033727 (-) False LOC110525939
XM_036980097.1 mRNA upstream 38644 40021719 ~ 40033727 (-) True LOC110525939
NM_001124202.1 mRNA upstream 53131 40036206 ~ 40040599 (-) True star
XM_036980099.1 mRNA upstream 72936 40056011 ~ 40132392 (-) False LOC110525940
TU575349 other downstream 68930 39887022 ~ 39889931 (-) True G506785
TU575314 other downstream 120701 39837648 ~ 39838160 (-) True LOC110525932
TU575254 other downstream 194085 39763291 ~ 39764776 (-) True LOC110525929
TU575200 other downstream 334517 39623685 ~ 39624344 (-) True G506641
TU573926 other downstream 535371 39421668 ~ 39423490 (-) True aopep
TU575676 other upstream 557584 40540659 ~ 40542329 (-) True G507063
TU576563 other upstream 1437949 41421024 ~ 41461922 (-) True G507906
TU576567 other upstream 1451900 41434975 ~ 41439014 (-) True znf131
TU577033 other upstream 1837780 41820855 ~ 41821210 (-) True G508303
TU577652 other upstream 2161022 42144097 ~ 42144885 (-) True G508891

Expression Profile