RNA id: XR_005052103.1


Basic Information

Item Value
RNA id XR_005052103.1
length 3232
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110525943
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40172320 ~ 40178096 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttCTGTTGACAATGAACTCTGATTTTTAAGCTGAGGGGATGATTGTGTCCGAAGGACAGGAAATACACAGTGTAAGGACTGACATCACTGGAGCAAGGAGAGCAGGGTTCAACATAATGTAAACTACGACACCATGCCCATGGTGAGAGGTTTGGCTACAGAGAGGTTGTTTTAAAAGGAGATCCTAAGAAGTTGAATCTCCATGGGGTAAGAATAGTATATCTTCCGTTTGTTATTGATTGTGAATAGGTATGATGAGGTTTGTCTAAATCTTAATAGAGGGACATAATCAAACATATCTGGTGCCACCTCAACCTCGacacctctcttctctcacccttttttctctctcgctctctctctctctttctctcgctctctgcctcaaCCTATCCTTTTTTCTGTCTCCTCTTTCTTCCCATGCGCCACTCTCTGCCCCtcattctcttgctctctctctctctcttgctttctaaACCTGTCCTATCCTGTCTCTTATCTCCTCTGCCCGTGTCACTCTCACAGCAGACGTGTGCTGTCTGCCTGGAAGACTTCAAAGTCAAAGACGATCTGGGTGTGTTGCCATGCCAACATGCCTTTCACAGGAAGTGTCTGGTGAAATGGCTGGAGGTGCGCTGTGTGTGCCCCATGTGTAACAAACCTATCGCAGGACCCCCAGAAAAGCGCCACAGCATAGGAACACTACTGGACGAACTGGTGTAACCATAGCATCCAGCACGGAGGGGGCTCTGCAAGCCAATGTAATCTAGCTCTAACAGGAAGAGAACACTGTTATCTGGTGTAACCTAGCAACCAACAGAAAGAGGACGCTGTTATCTGGTGTATCCTAGAAACCATCCACAGATTACTGTGAAATGGTGTAACCTAGCTACCACCTGGAGAGGACTATAAGAACTGCTGTTACCTAGCAACCAACACAGAGCTGCAGACAGGAGTCTACACCACACTCTGTCTAATCTCCTTCCCAGACACTTCCGCCTTAATGCACGAAGAGTCTGTTGGACCAAAGCGTCAAACTTGGCTTTTGTTAGCAAATAGAAAGGCCAGGAGAAACTCCCAGCGCATAGGCATTGGCTTAATCTACCAACCAATCATCTCCAACAGCACCTTCCCCCTAACCCTCTCTCGTACATGTCTTCCATACGTGTCTTGCCTCCATTTGGAGTCACGCCTCGCAGTCGTGTGATTCGCTCAAATTAAATGATGACAAATACTTTACTCAGTATGGTCACTGTAGAATTCTATGGTCACTCCCACACCCACTAAAGCCAACTTTGAATCATTGGTATCCCAGGCTTATTTGCGCTGTGCGCAATAGCATGGGGACGAGGTTACACTCTGTCTGACAGAATATCTCCATACCCACAtgtcactctttctttctttctttctttctctttgtctctgactgtctaactcttcctctgtctctctttcccctttcctctcactcaccctctctctgctctTGACTTTCTGCCACTCTCTGtctttatttctccctctcttctgatGTCTCTATGCTCTTTCTCaaccttgtctctttctctcccatacTGCCTCAGAGTTGCACGCTAGTTCCAAAGTCAGAAAGAGGGGAAACCTCCAGACTCTCCAGTTGGGAGAGTGGAGGAACAGGCCGGCTGACATGAAGACGAGTGGCACTATCAGAACCATGGGGTTGAGAAAATACACAGTGATGTTCTAATAATGTGCATCACCCTCTCACAATTTCTTTTTTTTGGTTTAATGACTGAAACGTGTTATTTCTTCAGAATGTAGACGATGTTTTGCACTCTAACACTCTGACAGGTTTTTTTGGAAACTTATTACCATTCTACACTACCGCAAATGTAGTTAAAGACTATTCTCAACAACATATTTGTGACGCGCAGGTGGTTTGGTGAACCATGCTCACATGTTTTAGAACCACCTGAAGACTTGTTTTAGCTCCCAGCATGAGcacctaggctttagctcagtagTCTGTTGTGGACCTGAGATATGCAGACAGCCTGGTTTTGACACCTAGCCAATCACATCGATGGATTGAGACATCTAAGTAATCAAAGGCACTACACCTGCCGTTTTCTTTCGTATTAGTGGTGTAGTAAAACCTGTGACGTGGCTTTCATGAAGCAAAGCGTTCTTCATATTTCAATCAAGTTACAGTAGAGTTTAGAGAGTTTCACTGTTTTTGTGTGATTCTTTCTCAAGAACAACTCAGTCACATTGTATACTTTTTGTATAATATGTTTTTACATTTCTTGACGGTGGCATTCAATGGCTCCTTTTCACACATTTTTGTGGagtaatctgttttttaaaactgTTTTACCAGACGAACACAGACCAAGTAAACACTGCCTATATTGAGCACAAAAGCACATTAACACTCCGCTATAGTCTCTGTATTAAGAATGGACTGAATCATCGCTTTGTTTGATCACACTTATGTAATGTGTGACTGTGCCAATGAAGTACAGCACTGTGTTGACCAGGGGATGAAGAAAATTATAAACCCGGGTAATTTgagtcctggatgctgattggctgaaacagtAGTTCAGCCATGTGCATATCAGACAATATGCCACGGGTATGACGCAAAAATACTTGTTTACtcttctaattatgttggtaaccagttacTAATAGCAGTAAATACCCAAGTCCGTTTGGGATATTAGAACAAGGAAcacttttttcccccctctcGGACATTGCACCCACATTAGAACAGCAGAATATGTACTGCAAAGAAATGTTGCACTCTGTTCGAAGCTCTCACCTCCTTTTCatccacaaaacaaaaacaataacaaagatgCCAGGGCGGACAGTGGCGCTGTTTCCCTGATGCGGATTCCATCTCTAAATATAGCACCCCCTACAGCACCGACAGAGATTAGCTTTTCCCAACACCAGCCACATTCCACGTTTTTGGTGTGCATCAATAAATATGACTTTAACAAATGGAGGGGTTTCCTCTTCATCTCAGTTTGTTACTTTTCAAGTTGTTTGTGTCTGGACTAtgttgtgtgcgtgtgcatttgtgtgtgggaACTGAGCACCACCCTCTGGTAAAACCGAAGAGTAACATCTGAAGTCTTATTTCGGTCGGCCACTTGTGGTGACATGCAGCTCTGCCACTTTCCTATCCTACATGTCATCTCTAAATCTGAATATGTcttgatttgaaaaaaaaaaa

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU574612 lncRNA upstream 5359 40166344 ~ 40166961 (+) True G506112
TU574512 lncRNA upstream 109706 40061587 ~ 40062614 (+) True G506039
TU574511 lncRNA upstream 115379 40056039 ~ 40056941 (+) True G506038
TU574508 lncRNA upstream 119627 40052458 ~ 40052693 (+) True G506035
TU574506 lncRNA upstream 121835 40050225 ~ 40050485 (+) True G506033
TU574637 lncRNA downstream 2275 40180371 ~ 40180617 (+) True G506127
TU574639 lncRNA downstream 4074 40182170 ~ 40182387 (+) True G506129
TU574584 lncRNA downstream 15736 40193832 ~ 40194236 (+) True G506100
TU574579 lncRNA downstream 16492 40194588 ~ 40196747 (+) True G506096
TU574583 lncRNA downstream 26824 40204920 ~ 40207158 (+) False LOC110525947
LOC118965025 mRNA upstream 6706 40160164 ~ 40165614 (+) True LOC118965025
XM_036980100.1 mRNA upstream 17334 40147336 ~ 40154986 (+) False LOC110525942
XM_021606470.2 mRNA upstream 17334 40147338 ~ 40154986 (+) True LOC110525942
XM_021606459.2 mRNA upstream 250597 39916138 ~ 39921723 (+) False LOC110525934
XM_021606472.2 mRNA downstream 7075 40185171 ~ 40191808 (+) True LOC110525945
XR_005052104.1 mRNA downstream 26807 40204903 ~ 40211735 (+) False LOC110525947
XR_005052105.1 mRNA downstream 26807 40204903 ~ 40211735 (+) False LOC110525947
XM_021606474.2 mRNA downstream 26807 40204903 ~ 40215454 (+) False LOC110525947
XM_021606476.2 mRNA downstream 26807 40204903 ~ 40215454 (+) False LOC110525947
TU574449 other upstream 209222 39962652 ~ 39963098 (+) True G505988
TU574282 other upstream 423840 39734784 ~ 39748480 (+) True LOC110525928
TU574236 other upstream 492289 39674012 ~ 39680031 (+) False LOC110525927
TU574237 other upstream 492289 39674012 ~ 39680031 (+) True LOC110525927
TU574235 other upstream 494057 39674012 ~ 39678263 (+) False LOC110525927
TU574576 other downstream 18704 40196800 ~ 40203886 (+) True G506095
TU574667 other downstream 78971 40257067 ~ 40259050 (+) True LOC110525949
TU574816 other downstream 366767 40544863 ~ 40547513 (+) False G506281
TU574820 other downstream 387971 40566067 ~ 40566429 (+) True G506285
TU574791 other downstream 390630 40568726 ~ 40859522 (+) True fbxl17

Expression Profile