RNA id: XM_021606472.2


Basic Information

Item Value
RNA id XM_021606472.2
length 2020
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110525945
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40185171 ~ 40191808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCTTCACCTGATCCCACCTCCCTATCATAATCACAGCCAGAGGCCTGCCTGTTTTATTACCGGTGTATTTTACTGGAAGGACCAGGAGATTATGAGCGTCTTTTTTTCTTGCTTAAAGAATCAGTTATATTATGAAGTTGGGTTGTGCGGATTCTAAAGGGTAATGATAGGAAAAAGTAGTGGTTTTAGGAATAGGGCTGGTTTGTTTTTTAGACAGTAGCcccccttgataaaaaaaaaactaacattttgttttacatgtttttGGTTAGGTTTAGTAAGCCCTACAAAATCGATTTTCtttttatatttgttttattgttttgaaCAAATAGCGAGGCATGTTCCACCGATAGGCTGTCTCACATCTCGCCGAAAAAAAGCAGACAGACGCCGGACGCTCCGGAGTCTACGGCTTTGTCAAAGACAGAAGTCCAGAGACACAAGATGTTTGAGGCTGGTAGAATCCCTCTCGTCCTTCTCGACGTAACCTGCTTTATCCTCGtcggGCTTCCCTTTGTGATCCTCACCCCTCAGCACAATCCCTTCAACAGGGGTTTCTTCTGTAATGATGAGTCCATCAGATACCCCCTGAAAGAGGACACCATATCCTACCAGTTACTGGGGGGAGTCATGATCCCTTTCACACTGATTGTGGTAGTCAGTGGTGAGTGCCTTGGCGTCTATATGACTCATATAAAGACCAAATCATCCTTGGGGACTAACTACGTGGCGCGCATCTACAAAGCAGTGGGCAGCTTCCTGTTCGGGGCTGCTGCTAGCCAATCACTGACGGACATTGCCAAGTACTCGATTGGTCGTCTGCGTCCCCACTTCCTGGCTGTGTGTAAGCCTATGTGGGACCGTATCAACTGCATTGCTGGAGGCTACATCGAGAACTTCACCTGTACTGGGGACAAAAACATGGTGGATGAGGCCAGACTTTCCTTTTTTTCTGGTCACTCATCCTTCTCTATGTACTGTATGCTGTTCCTAGCAcTGTACATCCAGGCCAGACTGCAGACAGAGTGGGCCAGGCTCCTCAGACCCACCATCCAGTTCTTCCTGATGGCAACGTCCATCTACGTCGGGCTGTCACGCGTCTCAGACTACAAACACCACTGGAATGACGTACTTACTGGCCTCCTGCTGGGGGCGATAGTTGCGATACTCACGGTGTTCTGTGTGTCCGATTTCTTCAAGACGCCTGTTGATCCAGTAGAGATACAAGAGGAGACGTCCCACCCCAGTCTACAGGACAACCCTGCAAATGGGATCCACTACGGAAGCACAGAATGAAGCTCTGACTACAACATGGACAATGCATTGAGGACAAGTAGCATGTTAAGCTAGCTACAACTACTTGCCATCCGCTTCAGAGGACTATGGTTATTTATTTCCATGCCTTTCAGGTCATTGGCATTGACTGTCGTGGAAATATCATGTTGCCTGAGCCCTGTAGACAGATGTTAAGTCCTCTCAGAGCCAATGATCTTGCCTATGTGTGTTGAGCTAACGGTCCTTGTGTTCAATTCCTGGTCTTTGTGTGCAATTGCGGTGCGAGGTCTGCTCTTGTTGGAACAGTTGGGATTGCATTGGTTTGAGGATTGTGTTTGAAATGAATGATATTCAAGTTTGTTACAGTGAGTAATGAGTGTCCATGTGTGTAGCCTGGCCAATAATAAGTCTTACACCTGGGAATGAAATACCACGACTGTCCCAAAGCTTAAATGAAAGTCAGGAGACTTACTGAGCTCTGCAATGATGtgctatgtactgtatatatattttttaatactgCCTTCGCCAGATTGTTGCTGACACTTGCTCAAAGCTCCCTGGAAACTCCTTACACATGTGTCCAAGTGTAGAAATCATGGCGACAaatacacaaattaactttttgaCATTTGTATGCAAATGCACTGTTGTAAAAACAGTGTTTTGAGCTTTTCGGAAAACAAAATGCTAGCTATGTGACACAAATAAAGATGGAATTCCATTTTGGTACTTTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU574639 lncRNA upstream 2784 40182170 ~ 40182387 (+) True G506129
TU574637 lncRNA upstream 4554 40180371 ~ 40180617 (+) True G506127
TU574612 lncRNA upstream 18210 40166344 ~ 40166961 (+) True G506112
TU574512 lncRNA upstream 122557 40061587 ~ 40062614 (+) True G506039
TU574511 lncRNA upstream 128230 40056039 ~ 40056941 (+) True G506038
TU574584 lncRNA downstream 2024 40193832 ~ 40194236 (+) True G506100
TU574579 lncRNA downstream 2780 40194588 ~ 40196747 (+) True G506096
TU574583 lncRNA downstream 13112 40204920 ~ 40207158 (+) False LOC110525947
TU574582 lncRNA downstream 21106 40212914 ~ 40215438 (+) True LOC110525947
TU574668 lncRNA downstream 67362 40259170 ~ 40260881 (+) True G506157
XR_005052103.1 mRNA upstream 7075 40172320 ~ 40178096 (+) True LOC110525943
LOC118965025 mRNA upstream 19557 40160164 ~ 40165614 (+) True LOC118965025
XM_036980100.1 mRNA upstream 30185 40147336 ~ 40154986 (+) False LOC110525942
XM_021606470.2 mRNA upstream 30185 40147338 ~ 40154986 (+) True LOC110525942
XM_036980094.1 mRNA upstream 263448 39916138 ~ 39921723 (+) False LOC110525934
XR_005052104.1 mRNA downstream 13095 40204903 ~ 40211735 (+) False LOC110525947
XR_005052105.1 mRNA downstream 13095 40204903 ~ 40211735 (+) False LOC110525947
XM_021606474.2 mRNA downstream 13095 40204903 ~ 40215454 (+) False LOC110525947
XM_021606476.2 mRNA downstream 13095 40204903 ~ 40215454 (+) False LOC110525947
XM_021606478.2 mRNA downstream 65186 40256994 ~ 40259050 (+) False LOC110525949
TU574449 other upstream 222073 39962652 ~ 39963098 (+) True G505988
TU574282 other upstream 436691 39734784 ~ 39748480 (+) True LOC110525928
TU574236 other upstream 505140 39674012 ~ 39680031 (+) False LOC110525927
TU574237 other upstream 505140 39674012 ~ 39680031 (+) True LOC110525927
TU574235 other upstream 506908 39674012 ~ 39678263 (+) False LOC110525927
TU574576 other downstream 4992 40196800 ~ 40203886 (+) True G506095
TU574667 other downstream 65259 40257067 ~ 40259050 (+) True LOC110525949
TU574816 other downstream 353055 40544863 ~ 40547513 (+) False G506281
TU574820 other downstream 374259 40566067 ~ 40566429 (+) True G506285
TU574791 other downstream 376918 40568726 ~ 40859522 (+) True fbxl17

Expression Profile