RNA id: TU574582


Basic Information

Item Value
RNA id TU574582
length 2525
lncRNA type sense_over
GC content 0.38
exon number 1
gene id LOC110525947
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40204903 ~ 40215454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGAACCATAAACAGTATGACTCTCTTACTCATCCATGGAGCAGGATGAAGTTccccctagacgctgatctttGGTCACTGCTGCGTCTCCCTTCCTAATGATTAAgattaggattgggggaggggtacACTGATTTCAAGAACTGCGCTTATGGGCAATTTCTACTCACAGCCTCATCCATAGCACGATCTTAAAGGCTGGGGATGCAGTGTCTGTGTCTTGTCTTTAGAGTGAATACAATGTCATCCTTTTCTAACATATACCAGTACCTTATTGCCTACAGAACAAGCACATGTGAGTTATACAGTGCATAGCAAACAACCTCTGTTTAGGTTCCCTTAATTTCAATCTCAGTTGCTCCCGTTGTTCAATACAGGAATACAGCTGGTGTTCCTAGGATATATCCAACTAGTAGGCCTTTGTTCTGTGTCCTAGAATGTGTAAGATGGTCCCCCATGATGGTAGTTGTGTATGGTATTGCTAGAACCACTGTAAACTGTTCAGTGATGGAAGCTGTTTTCTCTATATCGTGCATGAATCATGTTGGTGTAGTTCACTTGAACGAGGGTTAAAGGGAGAAAAAGCCATTCGTTTGAAAATACCAAACAATTATTCTTACTATTTACATttctttgatttgtttaattttttttcttcattttggtTTTCTTACTATCAATTTGTTTTGAGCGCTCATGCCAATTTGGACATTGGACCAAGTAAAGCCAAGTCCttgtccattttttttttttacaattctgaAGACATggcttcaatgctgcaaaaaaaaacaacatatttaTTAATGTAGCTTGTGTTTTGTAAATGCACTAAAATATGGGGTTTCCTGAAGTAGATTTGGTGGTGTGGGGTCTCCTTGTTCTAGCTTATGCGTCTGTGTTCGTTACACATGTCTTCATGCTTCCTTGTGTACTTTTGGAGGTTGACTTGACTGTGTTGCGTTTTTTGTTTTCCTTTGTCCAAACCCTCCATCCAAAAAAAAAACTAGACAGACAAACAAGGAGGGTTGCTACTTCACATAGGATGCTGTGAGTTGAAATGCCTTAAGTATTTAACAATCATAATTTATTACTAACCGTAGCTATTGTGGTGGCATATTTCATGTATTTTCTCTCTTGATTTTGCAATTGAATCAATCTATTTATTTAGAAATaacacaatgtaaaaaaataaataataatacctCATTATGCATTGGTTGGTGGGGATGCTTTGCATGCAAGTTGCGTTTTTCATAAGGAGAACATGTAATTTGGAAGGGTGTAATGTGAGCTGTCTCTAGCCAACGTGGTGCTGTTGATCTTGATTTACATTCCATTCAATGTCATATcgaagatccccccccccctgctttgATCGAGTGGACAGACTGTGACTAGGTACACATTTTTTAGCATGTAAACCTCCTAGCATGGCTATACCCCTTGCTGGCATAGAGGAAATATGATACtcttttatttttcatatttatCCCTGATCATTACCAGTTTCTCAGTTTGTTTTCATTTACCTCGTTTGTATATTTCACCATATCTGAATGTTGGGTGTCTCCATTCAGACCATACATTTCTCTGGCCCAGCTATATTAACTCTTCCCATATGAATGAATAACTCCATTATTAGGTACTTTGTATTGCTGGCAAATGCTGTGTTTGTGTAGTTAGGTGCGAGAGGTGGCTAACATGATAAACTTGAGCTATTGGGTCTTATTTTTTTCTGGTGTAATACTCTAGTGTGGTTTTACACCTGGGTATAATAAGCTAACCACCCGTTTTCTGTGTGCATTTTCTTAATAATAACAATTTATTAATCCGACATATATCCGATTGGAATGAAGCTGACTggtcttattttttatttttcctgCTGTCACTGGCCTTACCCCATATCTAGGGCCAAGAGATTTtcctggtcaggaaaaactcctgactTGCCCTCTGTCCTCTACAGACGGTATACTGCGTTAGCGGACAGTAGCCATAGTATTTTAACTCAAGCTGGTGAAGGGGAATGAACAGTAGAATCCTAAAGCACAAGCTTTCTAATGCATGTCCTCCTCAGGTTTTCATATGTGTACATGGGCGTAGCTGTAGACGTGTTTAATATGAGGCTGTACCTTCTTGAATATTACAGATGTTTTCTTTGCTGCTGACAAACTGTTGATGAAACTAACCTGCCAGTGATTTAAAGGGAAGTGGCCATCTTTGTACAACACACTGCTGTTTTGCTGTAACTGCGCAATGTGTTATGAGCTGGGGTATTTTATAGACGAAGTATGTATCAATAACATGAAAAGCAATAGCTAAATGATAATGAAGAATAACATGGATCAGTGAATATTGTGGAAAATCTTTAGATTTACTTTTGGtggattttgtactgtatttATTACTAATGATGATGCAAAAAGTTGCATAGCTTAACCCAAACTGTTCTGTctcctttttttatttattgtctTGTATATGATCTTTTTGTATGTGTTTTTCAAATAAACTGCC

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU574583 lncRNA upstream 5756 40204920 ~ 40207158 (+) False LOC110525947
TU574579 lncRNA upstream 16167 40194588 ~ 40196747 (+) True G506096
TU574584 lncRNA upstream 18678 40193832 ~ 40194236 (+) True G506100
TU574639 lncRNA upstream 30527 40182170 ~ 40182387 (+) True G506129
TU574637 lncRNA upstream 32297 40180371 ~ 40180617 (+) True G506127
TU574668 lncRNA downstream 43732 40259170 ~ 40260881 (+) True G506157
TU574675 lncRNA downstream 53847 40269285 ~ 40271231 (+) True G506164
TU574676 lncRNA downstream 55886 40271324 ~ 40272651 (+) True G506165
TU574678 lncRNA downstream 58614 40274052 ~ 40274270 (+) True G506167
TU574680 lncRNA downstream 63584 40279022 ~ 40279306 (+) True G506169
XR_005052104.1 mRNA upstream 1179 40204903 ~ 40211735 (+) False LOC110525947
XR_005052105.1 mRNA upstream 1179 40204903 ~ 40211735 (+) False LOC110525947
XM_021606472.2 mRNA upstream 21106 40185171 ~ 40191808 (+) True LOC110525945
XR_005052103.1 mRNA upstream 34818 40172320 ~ 40178096 (+) True LOC110525943
LOC118965025 mRNA upstream 47300 40160164 ~ 40165614 (+) True LOC118965025
XM_021606478.2 mRNA downstream 41556 40256994 ~ 40259050 (+) False LOC110525949
XM_036980104.1 mRNA downstream 71028 40286466 ~ 40309855 (+) False LOC110525953
XM_036980105.1 mRNA downstream 71028 40286466 ~ 40309855 (+) False LOC110525953
XM_021606484.2 mRNA downstream 92792 40308230 ~ 40309855 (+) False LOC110525953
XM_021606482.2 mRNA downstream 92818 40308256 ~ 40309855 (+) True LOC110525953
TU574576 other upstream 9028 40196800 ~ 40203886 (+) True G506095
TU574449 other upstream 249816 39962652 ~ 39963098 (+) True G505988
TU574282 other upstream 464434 39734784 ~ 39748480 (+) True LOC110525928
TU574236 other upstream 532883 39674012 ~ 39680031 (+) False LOC110525927
TU574667 other downstream 41629 40257067 ~ 40259050 (+) True LOC110525949
TU574816 other downstream 329425 40544863 ~ 40547513 (+) False G506281
TU574820 other downstream 350629 40566067 ~ 40566429 (+) True G506285
TU574791 other downstream 353288 40568726 ~ 40859522 (+) True fbxl17
TU576412 other downstream 1254113 41469551 ~ 41471408 (+) True G507768

Expression Profile