RNA id: XM_036980104.1



Basic Information


Item Value
RNA id XM_036980104.1
length 1164
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC110525953
representative False

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40286466 ~ 40309855 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGCGCTGGGTAGGGACAAAGAGAATAGTTAGCGATGAGTTTCTTTGGATAGCTGTCTTACCCAGATTTTGATGATCTTTCTCTCTTGCGTCCCATAATTTGGTGTCTGTGTATGGTGTGGAAAGTAGACATCTTCTAGCTGTAGGACATAAACAAGAATGACCACACGTTACATAGAGTAGACAATGGACTCTGAAGGTACTGTGGCTGCGGATGAGCTGAAGAAACAGCAGGCTGTCCTCCCATAGATCTCAGCTGCCCTGGCAAGACTCTTTTGCTTCCCCTGCAAAAAAGGAGCCAAAAGTAGAGATGACTGGAGCCGTTGTGTCCGTGTGTCTACTTtacgtcctgtctgtctgttcagccTGCTACATCTCCAACTGTCCCATCGGGGGCAAGAGGTCCATAATGGACGCTCCACAGCGCAAGTGCATGTCTTGTGGGCCAGGGGAGCAGGGCCGCTGCTTTGGCCCCAGTATCTGCTGTGGGGAGGATGTGGGCTGCTGGATGGGCTCCCCGGAGACGGCACACTGCATGGAGGAGAACTACCTGCCCACCCCCTGCCAGGTGGGAGGGAGACCCTGTGGATCTGATACAGCACGCTGTGCCTCACCGGGAGTCTGCTGTGACTCAGAGGGCTGCAGTGCGGATCAATCTTGTTTCGCTGAGGAGGAAGGCGACAATCAAATCGGCCAATCAGAGGGCAGCAACTCTGCAGACGTCATCCTCAGGCTCCTGCACTTGGCTGACCACACGCCTCCTCATAGAGTCCACCAATGAGCTGCAAGTGACACCAGGGTTCCACCGGGGTCACTTGAGAGATTGGTTGATAGGATTTGTAGTTCAAAGTTAGGATTTATAGTTCAAAGTTACCTAGATGTAGTTCATAGTTCACCCACCCATTTACTGACCTTCTTCAGTATATATTGGCAACCTCACTGGATGGGACCTAGCTAAGAATTTAACTCTGTGTTTGACATTTAATGTGTATCAAAACACTGGAGTTAAATTCTTAGCTAGGACCCTGAGCACTCCTCTGTAGATTGCCTTTATATTGCATACTTAAATATTGtagctatatactgtatgtacagaaaTAGCTGTAACAATTCTAATACGTGTAAAGAGTCCAAATGTGTATGTTAATAAAGCTTGTGCGAGTATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU574681 lncRNA upstream 6852 40279385 ~ 40279614 (+) True G506170
TU574680 lncRNA upstream 7160 40279022 ~ 40279306 (+) True G506169
TU574678 lncRNA upstream 12196 40274052 ~ 40274270 (+) True G506167
TU574676 lncRNA upstream 13815 40271324 ~ 40272651 (+) True G506165
TU574675 lncRNA upstream 15235 40269285 ~ 40271231 (+) True G506164
TU574706 lncRNA downstream 913 40310768 ~ 40311208 (+) True G506195
TU574725 lncRNA downstream 24402 40334257 ~ 40335548 (+) True LOC118965077
TU574739 lncRNA downstream 85490 40395345 ~ 40406885 (+) True G506216
TU574719 lncRNA downstream 99398 40409253 ~ 40410979 (+) True G506198
TU574776 lncRNA downstream 162146 40472001 ~ 40472427 (+) True G506250
XM_021606478.2 mRNA upstream 27416 40256994 ~ 40259050 (+) False LOC110525949
XM_021606474.2 mRNA upstream 71012 40204903 ~ 40215454 (+) False LOC110525947
XM_021606476.2 mRNA upstream 71012 40204903 ~ 40215454 (+) False LOC110525947
XR_005052104.1 mRNA upstream 74731 40204903 ~ 40211735 (+) False LOC110525947
XR_005052105.1 mRNA upstream 74731 40204903 ~ 40211735 (+) False LOC110525947
XM_021604987.2 mRNA downstream 5008 40314863 ~ 40317433 (+) True LOC110525028
XR_005052413.1 mRNA downstream 24484 40334339 ~ 40335255 (+) False LOC118965077
XM_036980106.1 mRNA downstream 41557 40351412 ~ 40354009 (+) True LOC118964866
XM_021604988.2 mRNA downstream 60310 40370165 ~ 40372761 (+) True LOC110525029
XM_021608082.2 mRNA downstream 105012 40414867 ~ 40417444 (+) True LOC110526900
TU574667 other upstream 27416 40257067 ~ 40259050 (+) True LOC110525949
TU574576 other upstream 82580 40196800 ~ 40203886 (+) True G506095
TU574449 other upstream 323368 39962652 ~ 39963098 (+) True G505988
TU574282 other upstream 537986 39734784 ~ 39748480 (+) True LOC110525928
TU574236 other upstream 606435 39674012 ~ 39680031 (+) False LOC110525927
TU574816 other downstream 235008 40544863 ~ 40547513 (+) False G506281
TU574820 other downstream 256212 40566067 ~ 40566429 (+) True G506285
TU574791 other downstream 258871 40568726 ~ 40859522 (+) True fbxl17
TU576412 other downstream 1159696 41469551 ~ 41471408 (+) True G507768
TU577295 other downstream 1819370 42129225 ~ 42131940 (+) True G508559

Expression Profile