RNA id: XM_036980109.1


Basic Information

Item Value
RNA id XM_036980109.1
length 526
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110525956
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40438659 ~ 40440911 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTTTAGTTAGTTAATGAGTGCAGGGCTGGATAGATGGGGGTATAAAGACAAGCAGAGAGCTGTGGCTGACTACTGTCACTGTCTTGTAGTCACCATGTCTTTCTCAGGGAAATACCAGATGGAGTCACATGACAACTTTGAGTCTTTCATGGAGGCTGTTGGTCTCCCTGATGAGCTTATCCAGGAGGGCAAAGACATCAAGAGCATCTCTGAGATTGAAGAGACTGGAGACCACTTCAAGGTGACTGTCAccacggggacaaagatcctcACCAACTCCTTCACCATTGGCCAGGAGACGGAGCTCGAGTCGCCGACCGGGGAGAAGGTCAATTCTGTGGTGACGAGGGAGGGTAACAAGCTGACGGCCATCCTGAATGGGATCGAATATGTCACAGAACTTACAGACGCAAACACCCTCGTCAACACCATGACTCTGTCTGGCATGTCATACAAGAGGACCAGCAAACGAATGTGAAGATCTACTGCACTCTTTGGATTAATAAAATGTGAAAGGCATTGAA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU574719 lncRNA upstream 27680 40409253 ~ 40410979 (+) True G506198
TU574739 lncRNA upstream 31774 40395345 ~ 40406885 (+) True G506216
TU574725 lncRNA upstream 103111 40334257 ~ 40335548 (+) True LOC118965077
TU574706 lncRNA upstream 127451 40310768 ~ 40311208 (+) True G506195
TU574705 lncRNA upstream 130949 40307480 ~ 40307710 (+) True G506194
TU574776 lncRNA downstream 31090 40472001 ~ 40472427 (+) True G506250
TU574777 lncRNA downstream 32195 40473106 ~ 40474139 (+) True G506251
TU574780 lncRNA downstream 36104 40477015 ~ 40477223 (+) True G506254
TU574775 lncRNA downstream 49667 40490578 ~ 40490918 (+) True G506249
TU574774 lncRNA downstream 50435 40491346 ~ 40491768 (+) True G506248
XM_021608082.2 mRNA upstream 21215 40414867 ~ 40417444 (+) True LOC110526900
XM_021604988.2 mRNA upstream 65898 40370165 ~ 40372761 (+) True LOC110525029
XM_036980106.1 mRNA upstream 84650 40351412 ~ 40354009 (+) True LOC118964866
XR_005052413.1 mRNA upstream 103404 40334339 ~ 40335255 (+) False LOC118965077
XM_021604987.2 mRNA upstream 121226 40314863 ~ 40317433 (+) True LOC110525028
XM_036980110.1 mRNA downstream 8656 40449567 ~ 40452162 (+) True LOC110515135
XR_002473848.2 mRNA downstream 28560 40469471 ~ 40475908 (+) True LOC110525958
XM_021606490.2 mRNA downstream 35126 40476037 ~ 40489852 (+) True LOC110525957
XM_036980112.1 mRNA downstream 59746 40500657 ~ 40505498 (+) False LOC110525959
XM_036980111.1 mRNA downstream 59746 40500657 ~ 40506112 (+) False LOC110525959
TU574667 other upstream 179609 40257067 ~ 40259050 (+) True LOC110525949
TU574576 other upstream 234773 40196800 ~ 40203886 (+) True G506095
TU574449 other upstream 475561 39962652 ~ 39963098 (+) True G505988
TU574282 other upstream 690179 39734784 ~ 39748480 (+) True LOC110525928
TU574237 other upstream 758628 39674012 ~ 39680031 (+) True LOC110525927
TU574816 other downstream 103952 40544863 ~ 40547513 (+) False G506281
TU574820 other downstream 125156 40566067 ~ 40566429 (+) True G506285
TU574791 other downstream 127815 40568726 ~ 40859522 (+) True fbxl17
TU576412 other downstream 1028640 41469551 ~ 41471408 (+) True G507768
TU577295 other downstream 1688314 42129225 ~ 42131940 (+) True G508559