RNA id: TU574788


Basic Information

Item Value
RNA id TU574788
length 1812
lncRNA type sense_over
GC content 0.48
exon number 2
gene id LOC110525959
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40500657 ~ 40506112 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTCCAGGCTCATACCCCCAGAGAGGACTGGGGACAGTGGGGACTCTGCTgtcactactgctgctgctgctatagaGTCAGCCAACCACCAGGGTGCACTTAGCAGAAACAGTGGGACACTCGCACAGACTACCCAAAAACGTGCAGAAAGTGTAAATACTGAGAGGAGCCACTCTACACAGCAAAGGGGAACCGGAGCTTTTAACAACAGGGTGAAGAATGGGAAGGACCGGTGTGCTGGTAAAGTTGGTCATAAAGAAGGGGTAGTGGATAGAGTGAGTCCCCAGGATATAGGGCCAGATTTGgggagtaggaggaagagagagctgGAGGTTTGGGCCACTCTGATCCGCTCTAAGGGAAAGGGTGAGCCCACCGCGGCCAAAGCAGCCTCTGCTAGTGCTGGTCACGCCAAGGAGCTACTTCCTGACTCGAAAAGACTAAGAACAGACACAAACTCTACTATCTCCACAGCCACCGTTCCCAGCGGTAGCTCCCATGAGCATTGTTCGTCTGCCAGTCTAGACCATGAGCAGCGTTTGTCTGCCAGTCTAGACCAGGCCCTTCTCTCAGCCCTGCAGGGTCGACCCTCCTTTACCTCCTACACATCCCAAACCCCCCAggtccaacacaaacacacagacacacccgcTGACACCCCAACAGGTAGGAGCAGCGGCTAGTGGCTGGTATGAATATGGCTAAGATGTATCTTTTCCTCTAagtaatcactgatctgacaAGGAAAAACAATTCAGTGGAATCCTGTTTTTTCTCTTCTCCAATCCCGTTCAGAAAAGTGATTACTTCAATTAAAATGGCTGTAATGCTTTTATAAGGTTTTCCATCAACTTCAGGGTTGAGAGTACGAATGAATGATGGAGAAAAGTATTGAGTTGACTAGTCATTAGTTGAACAAGTTAGATGGTTAAGTAGTGGGATGTTGCCTAGTTACCAGGGAGAAAGACACTTAAAACATAGAGGCAGTCCAACGGCAGGATTTTCAGGCCTACTACACTGTACCAAGGTCTTTCAGTTTGTTATTTTCACCTACAGTATGTGTGCAGAGATGGGTCAAGATGGGTCTTTCTTTATACTGGATCCTCTGCGACTTGCCATAAAAGCGTTATTTCCATTGCTGTAATTCCTGTAGTTTGTTGATAGCCTTTTTTCAATAATGTTTCAGTTGATGGAGAGTGAATACAGTGGTCtgtgagagagaaaataaaaacgGAACAGATACTCATTCAAGGTTATATGTACTGCTCAATacatgttctctttctctccttcaccctctatAGCTTTTCCtatttctctccttcccccccttctctctccccttccctttctctctctcccaggtgaGAACAGGTGTGGTTCATGTTCCTGCTCTCTGTCCGTCTACTCGACCTCTCCGTCAGCATACCGCCTGCCCTGTGGTCACTTCCTGTGCCGCCCCTGCCTACACAGGAAGTCCCGCCCACTTGTCACCACAGCAATGCCCAATCACATCCTATGTCCCACCTGCAATATCCCTGCCTCTTCCAGTAACATCACACGCGTGCATCACTGAATGAAAAAATGTGTGGCATTAACCACTGAACAACCCTACTCACTGAAAACGTGTGTTGTTAACCACCACCGGACTCCCACTCACTGTACATGCCTGTGCTCTTCACTGCAAATGTGAGGGGTGGACATTGGAGGAAACAGATTACAATGGGACTCTTTATTATCCCTTGGGCCTTGATAAGCAAATACACCTGTCTTGTGCTGCCCCTCTACCCCACTCTCCAACAGAAGTCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU574773 lncRNA upstream 10882 40492027 ~ 40493232 (+) True G506247
TU574774 lncRNA upstream 12346 40491346 ~ 40491768 (+) True G506248
TU574775 lncRNA upstream 13196 40490578 ~ 40490918 (+) True G506249
TU574780 lncRNA upstream 26891 40477015 ~ 40477223 (+) True G506254
TU574777 lncRNA upstream 29975 40473106 ~ 40474139 (+) True G506251
TU574808 lncRNA downstream 26011 40532095 ~ 40532555 (+) False slc35d2
TU574811 lncRNA downstream 26011 40532095 ~ 40532632 (+) True slc35d2
TU574814 lncRNA downstream 34417 40540501 ~ 40540903 (+) True G506280
TU574815 lncRNA downstream 40229 40546313 ~ 40547513 (+) True G506281
TU574876 lncRNA downstream 131749 40637833 ~ 40639089 (+) True G506336
XM_021606490.2 mRNA upstream 14262 40476037 ~ 40489852 (+) True LOC110525957
XR_002473848.2 mRNA upstream 28206 40469471 ~ 40475908 (+) True LOC110525958
XM_036980110.1 mRNA upstream 51952 40449567 ~ 40452162 (+) True LOC110515135
XM_036980109.1 mRNA upstream 63203 40438659 ~ 40440911 (+) True LOC110525956
XM_021608082.2 mRNA upstream 86670 40414867 ~ 40417444 (+) True LOC110526900
XM_021606493.1 mRNA downstream 11507 40517591 ~ 40519539 (+) True avp
XM_021606494.2 mRNA downstream 14890 40520974 ~ 40524282 (+) True ccl27a
XM_036980113.1 mRNA downstream 21754 40527838 ~ 40533844 (+) False slc35d2
XM_021606496.2 mRNA downstream 22233 40528317 ~ 40533844 (+) False slc35d2
XM_036980121.1 mRNA downstream 62553 40568637 ~ 40886427 (+) False fbxl17
TU574667 other upstream 245064 40257067 ~ 40259050 (+) True LOC110525949
TU574576 other upstream 300228 40196800 ~ 40203886 (+) True G506095
TU574449 other upstream 541016 39962652 ~ 39963098 (+) True G505988
TU574282 other upstream 755634 39734784 ~ 39748480 (+) True LOC110525928
TU574237 other upstream 824083 39674012 ~ 39680031 (+) True LOC110525927
TU574816 other downstream 38779 40544863 ~ 40547513 (+) False G506281
TU574820 other downstream 59983 40566067 ~ 40566429 (+) True G506285
TU574791 other downstream 62642 40568726 ~ 40859522 (+) True fbxl17
TU576412 other downstream 963467 41469551 ~ 41471408 (+) True G507768
TU577295 other downstream 1623141 42129225 ~ 42131940 (+) True G508559

Expression Profile