RNA id: XM_021606496.2


Basic Information

Item Value
RNA id XM_021606496.2
length 2291
RNA type mRNA
GC content 0.37
exon number 11
gene id slc35d2
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40527838 ~ 40533844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTCCCTCCTACATGTTTCTAGGAATtggccaggtaggctatactgtatCTCAATTCACGATTCTTGAGGTAGAAGTTGCACCACAGAGATatgacTACTACAATCCTCATTCTCTATTTTGCTAAAATGAACCAAACAGTTCACTTCCAAGACTTTGACAGAAGTGTTCTCATCAAAATCTTCCCCCTACCTTTGCTGTATGTTGGAAACCACATAACAGGACTGGCTAGTACAAAGAAGTTAAGCTTACCCATGTTCACGGTATTAAGGAAGTTCACCATATTGATGACAATGATCATGGAAGCAAGGCTATTGAGAAAAACATTCCCTAATCGTCTTATCTACAGTGTTCTGGCCATCATTTTTGGAGCTTTGGTGGCTGCCAGCTCTGACTTGGCCTTTGATGCAGAGGGCTACACGTTCATTCTGCTTAATGATGTCTTCACTGCTGCCAGTGGTGTGTACACCAAGAAGAAGCTTGGAACTGAGGGTCTTGGAAAATATGGGATCTTATTTTACAATGCATTCATCATCGTCATCCCAACTCTTCTGGCAAGTGCATTTACTGGGGATTTAGACAAGGCCATCACATATGAACACTGGTTGAATGCCCCCTTTGTTTCCTGCTTCCTTATTTCCTGCCTCATGGGGTTTGTGCTGATGTATTCCATAGTGCTGTGTAGCCACTACAACTCTGCACTGACCACCACGGTGGTGGGAGCAATTAAGAACGTTGCTGTGGCCTACATCGGCATGTTTTTAGGTGGAGACTACCTGTTTTCATGGACCAACTTCCTGGGGTTAAATATTTGTATATCAGGGGGACTTGTGTATTCCTACCTGACGTTCCACAGCAGCAGCAAACCATCCCAAAGCGATGAAAGCGGAATAAAGGGAAACCAGGACCAGCTGATCATTCCCATGATGGAAGATTCCATAGACAGACTCCCTGTGAAATAAGTGAATAAACCTGTGATGAACCAGGTGAGACATGATGCCGTAGTCTTTTTCTGTACTGTAAGCAGTAAACACTGCCTTTGGTATCGGCTCCATAGTGGAGCAAAAGTTATAACATTTTGTAGACTTAAATGATCATTATGTTAAATTATAATCATATTTTTGACCAATGTTCATTATTTTGTGTTGCAAGTTGAAACCTGCAATTCAATTGTCTTGTCAAGGGTTTAGCTAATCTATAGGTGTTATTACACATGTAAATAGCAATACTATATGTATTATTACACATGTAAATAGCAATACTATATGTATTATTGCACATGCAAATAGCAATACTATATGTATTATTACACATGCAAATAACAATACTATATGTATTATTACACATGCAAATAACAATACTATATGTATTATTACACATGTAAATAGCAATACTATATGTATTATTGCACATGCAAATAGCAATACTATATGTATTATTACACATGCAAATAGCAATACTATATGTATTATTACACATGTAAATAGCAATAGTATATGTATTATTGCACATGCAAATAGCAATACTATATGTATTATTACACATATAAATAGCAATACTATATGTATTATTACACATGTAAATAGCAATGACCACTAGTAGTTACTAACCACCTCTTGAAACCAATGTGTGTGACTGAAagacatactgtagtgtagtgtatagagCTGTATGTTCAATGAGAACTAAACTATAGTTTAGTGATGCAGCTCTTAACAATCAATGAACCTAACTATAAACGTGAAGAAATGAAACTAGCTCCTAGACCATGATCAATGATGGTGTTTATTGAAGACCAACTAGTACCAACAGTGGACTGCCTATAAAGAGAATCTCGGCTTTAAACACCAACAATGTCATCTCCACAGAGCAAGTCAGAACATTTCCTATCAAGGCCTAAAACACACCAATTCTGACTATGGTCTGTTTAACACAGTGGGAGAGAAAGTGAATTTCACAATCATCTACACATGAACTTCAAGCTCTTGTACTGTAGATTGTGTGCAGTCatttttctccttctctttctctaacAAACAAGTTAGGGAATATATTAACTGACGAAACATTTTGAAACCAAATAATAAACAATGAGTTAGAAAAACAAGATATATACATTATACTTGGGTATAATAACACATAATTTGGTGCTTTGACTGTTGTCCAGATTAGCCTGTACTCCATCAAAAGATGTATAGGACACGTTATCTCACTGGACAGTGTGGTCCACTCAACGTCTACTTTTAATTACATTTGTTTGAATTGTAAAGTaaagtgaattcaatgtgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU574787 lncRNA upstream 22233 40504114 ~ 40506084 (+) False LOC110525959
TU574788 lncRNA upstream 22233 40504114 ~ 40506084 (+) True LOC110525959
TU574773 lncRNA upstream 35085 40492027 ~ 40493232 (+) True G506247
TU574774 lncRNA upstream 36549 40491346 ~ 40491768 (+) True G506248
TU574775 lncRNA upstream 37399 40490578 ~ 40490918 (+) True G506249
TU574814 lncRNA downstream 6657 40540501 ~ 40540903 (+) True G506280
TU574815 lncRNA downstream 12469 40546313 ~ 40547513 (+) True G506281
TU574876 lncRNA downstream 103989 40637833 ~ 40639089 (+) True G506336
TU574923 lncRNA downstream 166216 40700060 ~ 40700389 (+) True G506382
TU574965 lncRNA downstream 230645 40764489 ~ 40766041 (+) True G506417
XM_021606494.2 mRNA upstream 4035 40520974 ~ 40524282 (+) True ccl27a
XM_021606493.1 mRNA upstream 8778 40517591 ~ 40519539 (+) True avp
XM_036980111.1 mRNA upstream 22205 40500657 ~ 40506112 (+) False LOC110525959
XM_036980112.1 mRNA upstream 22819 40500657 ~ 40505498 (+) False LOC110525959
XM_021606490.2 mRNA upstream 38465 40476037 ~ 40489852 (+) True LOC110525957
XM_036980121.1 mRNA downstream 34793 40568637 ~ 40886427 (+) False fbxl17
XM_036980122.1 mRNA downstream 34794 40568638 ~ 40671271 (+) False fbxl17
XM_036980120.1 mRNA downstream 34797 40568641 ~ 40886427 (+) False fbxl17
XM_021606509.2 mRNA downstream 34802 40568646 ~ 40886427 (+) False fbxl17
XM_036980124.1 mRNA downstream 441535 40975379 ~ 41084448 (+) False efna5b
TU574667 other upstream 269267 40257067 ~ 40259050 (+) True LOC110525949
TU574576 other upstream 324431 40196800 ~ 40203886 (+) True G506095
TU574449 other upstream 565219 39962652 ~ 39963098 (+) True G505988
TU574282 other upstream 779837 39734784 ~ 39748480 (+) True LOC110525928
TU574237 other upstream 848286 39674012 ~ 39680031 (+) True LOC110525927
TU574816 other downstream 11019 40544863 ~ 40547513 (+) False G506281
TU574820 other downstream 32223 40566067 ~ 40566429 (+) True G506285
TU574791 other downstream 34882 40568726 ~ 40859522 (+) True fbxl17
TU576412 other downstream 935707 41469551 ~ 41471408 (+) True G507768
TU577295 other downstream 1595381 42129225 ~ 42131940 (+) True G508559

Expression Profile