RNA id: XM_021606509.2


Basic Information

Item Value
RNA id XM_021606509.2
length 4493
RNA type mRNA
GC content 0.48
exon number 11
gene id fbxl17
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40568637 ~ 40886427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACCAATAACAGATTGTAAATCGCGTTTTTGTCGTCTTCCTCTCCCTGCATTTATTTAGTCCGGAAGTGTTTTCTTTGGAGACCAAAACACCATAAAGAATATTTTACCTGAATTGTTGCCAATTTCACATTATTGTGCCCTGAAATTTTAACGCTATACTCGTCCGTGTGTTGCACGCGTGGATTATGAGAGCACCATTCGGAGGGGGGAGCACAGCGTGAACTGAGTCTCCGTGAGTCATCTATATGGGCCATCTTCTCTCGAAAAATGGTTACCGCCTGAACAAGAGGACACGCAAGCTGCACcacaggaagaagaagaagaggaactGCTTCCTGCAGGGGCCCTGCATGCTCTGCTTCATCGTCCACGGCAACAGCGGGGGCCTCGACGACGACGACAGCGACCAATTTGAGACCGGGGTCAACGGCGGAGGCAGAGGACGTTGTCACAGCAACGCAGGTGGTACCGGAATCGGAAGCACCTCAAAGCTCGCTGGGCGGTACGCTGCTCTCACTTCCCCTGAGGACTGTGCCAAGTTCCTGCTGTCGCCAAGGGAACTAGCCATCTGGGAGGGCCAAGGGAGGAGTCTACTGTCGGCCGTGCCGGCTAAGCTGATTCCACCGCCAGCGCTGTTCCGGAGTGCAGGGATTCCAGTGCCCATAGCTGTGGCTGTTTCTGTGCCTGGTAGTGCCAGTGACTACGCTGAGATGGTGTGTAAGAGGAAGTGTGCGGAGGTGCAGAGGTGCACACCCTGTAAGCAGCCGCGATGTGCCTTCCCTGTccctgagggaggtgtggaggatggaggaggaggaggaagtggggaTGCCTCCTCTAACTCCGGGACTGGCCACTGCCACCTCTGCCCCCtgccctcatcctcttcctcctcatcctcgtCTGTCGAGGGCTGCTGTGGGATGGCTCTCCATGGTGATCCGCTGCCCCAGAGTTCTGACTCCTCCCCCTGCTGTCCGCATCACCATGACGACTGCCAGGGGAGAGGCAGTGACGTGATTGACACATCCAGCATCAACcgcctcccctcctccatcctgcTTAAGGTGTTCTCCCACCTGTCGGTGAAAGAGCGCTGTCTGTGTGCCTCGCTGGTCTGTAAGTACTGGAGGGACCTCTGCTTAGACTTCCAGTTCTGGAAGCAAATTGACCTCAGTGGCCTACAACAAGTAAATGATGACCTCCTGGTGAAGATAGCGTCTCGGAGGCAGAATGTGACGGAGTTAAACATCTCTGACTGTCGTGGCGTGCAGGACCACGGTGTGTGTTCCCTGGCAGCCCACTGCCCGGGCCTTCAGAGGTACACAGCTTACCGCTGTAAACAGCTGAGTGACCTGTCCCTCAGCTCCCTGGCCTTACACTGTCCTCTGCTGGCCAAGGTCCATGTTGGAAACCAGGACAAACTGACAGACGACGCACTCAaaaagTTAGGAGAACACAGTTCAGAGTTGAAGGACATCCACCTGGGTCAGTGCTACAGTATTACTGATGAGGGGATGGTGGCTCTGTCCAAGGGATGTCCCAAGCTGCAGAGAATCTACATGCAGGAGAACAAACTGgtAACTGATAAGTCGGTGAGGGCGTTTGCCGAGCACTGTCCTGAGCTGCAGTTTGTGGGCTTCATGGGCTGTTCTGTGACATCACTGGGAGTCATCCATCTTACTGGGCTGCGTAACCTGAGCAGCCTGGACCTGCGGCACATCTCCGAGCTCAACAACGAGACCGTGATGGAGGTGGTCCGGAAGTGTAGGAACCTCAGCTCCCTCAACCTCTGTCTCAACTGGAGCATCAacgacaggTGTGTGGAGATCATCGCCAAGGAGGGGAGGAGCCTCAAAGAACTCTACCTGGTCTCCTGCAAGATCACAGACCACGcTCTGATAGCGATTGGCCAGTACAGCAGCACCATAGAGACAGTGGATGCAGGCTGGTGTAAAGAGATCACTGACCAGGGAGCTACGCAGATTGCCAGAAGCAGCAAGTCACTACGATACCTGGGCCTCATGAGGTGTGACAAGGTGAACGAGGAGACTGTGGAGAGGCTGGTGGTGCAGTACCCTCACATTGTGTTCAGTACGGTGATGCAGGACTGCAAGAGAACCCTGGAGAGAGCCTATCAGATGGGCTGGAGCCCCAACACATCCAACGCCTCATAGCCACCgctgtagcccccccccccccctctacgcacgcacacacacacacacacacgcatgcgtaTACATTGCCGCACACACTGACATAGGCGTGTGCACAGTCAAAGTGAAAACTCACCACATGGCCAATCATGTTTACTTCAAACATACTACTACAAACACTTAGTAATACCTTCACACTCATTTAAACAAACCGGTTGATCCACATTTTCACCTTCTGGAAAGATGTCTGTAGTTTTgggttgtttttatttttgtagatgtattttattttatctatGGACCTTTTTTGGATTCCATTGTAGTTCAGTCATAAGTCATAGACAAATCATACTGTACATCACTGTATACCTCTGTCTTAGGCTTGTGTATCAAAGAACTGTATTGcccatagtgcacttcttttgaccagagccctatgtggctGTAGTCAAAACTAGTGCTACAGTGCATGGTGATAGGGTGTCGTTTGAGGGTTGACTTTTGCTGTGCTGGCAGTTTTGTGAGCCTTACATTTCCCCCTGACTCCAGTCTGGATGCAATAGCAGACTTGCGGATATGGAGTAGCGACTGAAAACAAGGAAACATTGTTCTAAACATGTTAAAAACATTATACTCTGGTCTCGTTGACCATTAGGGCTACATGTTTTGATCACTGTGAAGTCAATGTCGTTTCATACTGGACATGTTTCTACCTTTTCTGTTGGATGTTCATACGTGTGTCGTGTTTTTAAGGCCCCGAGGGTTCTCTGACCATGTGACCCGATCAGGAAGAACTTCCGGTCCAAGATATAGGCTAGTTTTTCCCTGGTGAGCTCAAAATGGGCAGGGTAAACTCCCGACCTAATATGAGGTTCCCGATATGGAACTAAGCCCCATCTGATGGACCATAGCTATGGCTCCCTGATAAAATGCTACAGTTGAGAGATTCAATCCAGCTGCACGGGAGAACTGCAGGGAAATATTGTTCCAGCTCactaaaaatgtatattttcattCCAAATCTTAATATGCTCTTGTTTCATCTAGTAAATGTCATGTCATTCACACAGTTGATGGACATTTGTGTGGCACAGGAGCAGTGTTGGATATTGGTTTGTGCAGTTCAGGTTTCATTGAATGCCATCCCTAATCATGGTTACTGTCACAGTACTCAGTGGGCTCAACATAGAAGTTGCAACCCTGGACCTATAGCAGATGATCCTAACCCTTATCCCAACCTTATAACCATCAGGGAGATGAATCAATATCTGACTCTGGACCAGTGGTCAGGGGCAAAGTCAGCCTATCCAGAACGGCTCAGCATGTTCCCAAGGAGTAGTTTCTCAGCACTGAACACGAGTAAATCAGAGAAACTCTCTACTTTCACTGATGGAAACCTACACTTTTAAAGTCATCCTCGTAAAATGCTATTTGTTTCTCAATGACTTACCTGGCTGAAGAAAGGTTCAATACTTCAGCTCTTCTGACAGAAACATTGTCTTGAAGATGTCTGTAGTTGTTCTTAATGTCAAAAAAAAAGGTAAGAAAAAATGAACGTAGATGAGTCTGAACTTGTAATGTCTTTCTCtgatattgtttttttatttttatctttcTCTCAGTTGAAGATGATGTTGTATACTGTACCATTAGTATGGTGTAATAATCAATGGTTTGGGATTGTGCTCGGCTGTATGAGAATTTTAGTGATTTCCACAGTATGTATACTCGACTATAGGATTATACTTAGCCCAATATTGGTTTTGTTTGAGCATATATTTTCAGAATTAGTTGTGTGGCCATGCATCTACAGTATATCTTTGTTAGCAATAGGATCTAAGATACTGGCTCAGAACGTATAATCATGCCCTTTATGGAAATAATAGGtgagctctctctcactctctctctccctccctctctcgttcctcATCTGTTCCTCATCTGTCAATGGTATGTTTATGAAGCAAATAACCAGGGTATTTTTCTATGGTGATAACCAACTGGAACCATTTTCTTTAGATGCCGTCACTCGACTGTATACACTAGTAGTTTTCTGAACTTAGGATAGGAAGTAGCActgtaatattttttttacagaaacgtaGAGCTTAGAGACAATTAAGAACACATCCCTTGTCAGGACTTGTTGACTTCAGATCGAGTCctcgtttcccccccccccaccagtttTTTAGTTTGTTTTGTAATCTCAACATTAACTTTCTTTTTCTCTGCTTGATGTTGGCACTCTTGATCCCTGATTTGTTAAAGCAATCAGTAAACAACTGGATTTACATACAGATGAATAAAACACTACTACTTAaagcgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU574815 lncRNA upstream 21133 40546313 ~ 40547513 (+) True G506281
TU574814 lncRNA upstream 27743 40540501 ~ 40540903 (+) True G506280
TU574811 lncRNA upstream 36014 40532095 ~ 40532632 (+) True slc35d2
TU574808 lncRNA upstream 36091 40532095 ~ 40532555 (+) False slc35d2
TU574788 lncRNA upstream 62562 40504114 ~ 40506084 (+) True LOC110525959
TU575065 lncRNA downstream 31562 40917989 ~ 40925687 (+) True G506511
TU575086 lncRNA downstream 62248 40948675 ~ 40948992 (+) True G506531
TU575081 lncRNA downstream 198064 41084491 ~ 41086322 (+) True G506526
TU575079 lncRNA downstream 199990 41086417 ~ 41088951 (+) True G506524
TU575158 lncRNA downstream 203472 41089899 ~ 41090182 (+) True G506602
XM_036980113.1 mRNA upstream 34802 40527838 ~ 40533844 (+) False slc35d2
XM_021606496.2 mRNA upstream 34802 40528317 ~ 40533844 (+) False slc35d2
XM_021606494.2 mRNA upstream 44364 40520974 ~ 40524282 (+) True ccl27a
XM_021606493.1 mRNA upstream 49107 40517591 ~ 40519539 (+) True avp
XM_036980111.1 mRNA upstream 62534 40500657 ~ 40506112 (+) False LOC110525959
XM_036980124.1 mRNA downstream 88952 40975379 ~ 41084448 (+) False efna5b
XM_036980123.1 mRNA downstream 88959 40975386 ~ 41084448 (+) True efna5b
XR_002473854.2 mRNA downstream 296421 41182848 ~ 41188172 (+) True LOC110525969
XM_021606522.2 mRNA downstream 571860 41458287 ~ 41461918 (+) False LOC110525974
XM_036980132.1 mRNA downstream 571878 41458305 ~ 41460763 (+) True LOC110525974
TU574820 other upstream 2217 40566067 ~ 40566429 (+) True G506285
TU574816 other upstream 21133 40544863 ~ 40547513 (+) False G506281
TU574667 other upstream 309596 40257067 ~ 40259050 (+) True LOC110525949
TU574576 other upstream 364760 40196800 ~ 40203886 (+) True G506095
TU574449 other upstream 605548 39962652 ~ 39963098 (+) True G505988
TU576412 other downstream 583124 41469551 ~ 41471408 (+) True G507768
TU577295 other downstream 1242798 42129225 ~ 42131940 (+) True G508559
TU577938 other downstream 1680678 42567105 ~ 42569384 (+) False G509160
TU577937 other downstream 1680821 42567248 ~ 42570169 (+) True G509160
TU579244 other downstream 2771041 43657468 ~ 43658493 (+) True G510416

Expression Profile