RNA id: XM_036980124.1


Basic Information

Item Value
RNA id XM_036980124.1
length 1742
RNA type mRNA
GC content 0.50
exon number 4
gene id efna5b
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40975379 ~ 41084448 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCCACTTTCTGGCTGCACCGAGCTGCCTTTGCTCTCACCGTCCCTTTAGTCTCGTCCCGTTGAATCTAAACATCAGGGGGAAAGAAGCACATGAATAAAGCGtgttttattttttctctccTATGCTTATATATGAAGAGGATGCAGTGGAATGCTGCCATTTGGGCTCCGGGTAAAGAAGCGTCTCTACTGTCACCCAACAGTAGCGCATGAGAGAGGCTCGAGGACGGACTCCTCCCCACCCCCTTGACACTATCAAGACAGCACTGAGAAAGGATAGCTGCCTTTTTTTCGGCCAGTCTGCGAACGGAGCAAAGACAGCGTTACGAAAAAAGGACTAGACTACAACCGGGGGTTGCCTATATGGCTTTCCAAAGTTCCATCTCTGAAAACGTGGACATTGAAGGACACCAGCTATAGGGGGACATTGGACACCAGCTATAGGGGGACATTGGACACATATGGCTCGTTTTCCTTACTCAATCTTGACACCGATCCAGCTCAGCGCATGACCGTACAGAGACGGCTGTAGTCTGTTAGAGGGGACTTCTAACAACTGTTTTATCAATATTTGTTTGATATCCCTATATGTATATTTGTGTGAACATATTTTGTCTGGCCTAGGAGTAATTTTTACGCATACTGGAACCGTCAAAAACGGATGTCCCATTCACATATCATACAACTGAACCAGACACTGAACCTGAAGAGAGAAGCACTAACCACAGTGACACTCGCATTTGATAACTTCACCTGCTACTGTCGTCAAATTAATTCCAATTGACCAACGAGGCGTCATCTCTGTTGCAGGTTGCGCTATCAAAGCCTCTCGCACCTTGGGGTAGGAGACAGCGATTTTCTGTTATTGAATTGTCTTGCCTATTTCTGCCATTCATAAACTGCGACAGAGGACAGAAAAGGCACACAAATGTAAACAAGACAAAGCATCTCTCCTTCTGAAGTGTACCCTAAACTGACTGATCCCGCAGTCACCCCGCATCGAAGAGGAATACGTGCCGAACTTTGCTGTAGTGATGCTGCAAGTGGAGATGGTGCTATTCGTCTTTCTGGTGCTATGGATGTGTGTATTCAGCCAGGAACCCAGCTCCAAGGTGGTGGCCGACCGCTATGCCGTCTTCTGGAACCGAACCAACCCCAGGTTCCACCGTGGAGACTACCACATTGACGTGTGTATAAACGACTACCTGGACGTGTTCTGTCCCCACTATGAAGACACGGTGCCGGAGGAGAGGACGGAGCGCTACGTCCTCTACATGGTCAACTACGACGGCTACAGTACGTGTGACCACACCGCCAAGGGCTTCAAACGCTGGGAGTGTAACAGGCCTCACTCCCCCAACGGGCCGCTCAAGTTCTCCGAAAAGTTCCAGCTCTTCACCCCCTTCTCTCTGGGCTTCGAGTTCAGACCAGGCAGAGAGTACTACTACATCTCCTCCACCATCGCTGAGAACGGAAGAAGAACATGCCTGAAACTCAAAGTTTTCGTCCGACCATCAAATGATACGAGTCACGAGTCGGCCGAACCTTCCAGGAGCGACGGCACAAATGCAGCGTCACACTCGCGGATAGCCAGACCACTTCTGGCTGCACTGCTAATCTGCCTAGCAACACTCTTCACCTTATAGCGCCTCCCCCTGTCCTGGACGGGAATTATACCCTGTGAGGCCTGAATCTGCCCAGTGCTGAGGCTGGGGCTAGGGTGGGagaattgaggggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU575086 lncRNA upstream 26387 40948675 ~ 40948992 (+) True G506531
TU575020 lncRNA upstream 35306 40861090 ~ 40940073 (+) True G506471
TU575065 lncRNA upstream 49692 40917989 ~ 40925687 (+) True G506511
TU574965 lncRNA upstream 209338 40764489 ~ 40766041 (+) True G506417
TU574923 lncRNA upstream 274990 40700060 ~ 40700389 (+) True G506382
TU575081 lncRNA downstream 43 41084491 ~ 41086322 (+) True G506526
TU575079 lncRNA downstream 1969 41086417 ~ 41088951 (+) True G506524
TU575158 lncRNA downstream 5451 41089899 ~ 41090182 (+) True G506602
TU575180 lncRNA downstream 34616 41119064 ~ 41119403 (+) True G506622
TU575185 lncRNA downstream 39834 41124282 ~ 41124489 (+) True G506627
XM_036980121.1 mRNA upstream 88952 40568637 ~ 40886427 (+) False fbxl17
XM_036980120.1 mRNA upstream 88952 40568641 ~ 40886427 (+) False fbxl17
XM_021606509.2 mRNA upstream 88952 40568646 ~ 40886427 (+) False fbxl17
XM_036980122.1 mRNA upstream 304108 40568638 ~ 40671271 (+) False fbxl17
XM_036980113.1 mRNA upstream 441535 40527838 ~ 40533844 (+) False slc35d2
XR_002473854.2 mRNA downstream 98400 41182848 ~ 41188172 (+) True LOC110525969
XM_021606522.2 mRNA downstream 373839 41458287 ~ 41461918 (+) False LOC110525974
XM_036980132.1 mRNA downstream 373857 41458305 ~ 41460763 (+) True LOC110525974
XR_005052108.1 mRNA downstream 431291 41515739 ~ 41522572 (+) False LOC118964869
XM_021606527.2 mRNA downstream 486556 41571004 ~ 41677673 (+) False oxct1a
TU574791 other upstream 115857 40568726 ~ 40859522 (+) True fbxl17
TU574820 other upstream 408950 40566067 ~ 40566429 (+) True G506285
TU574816 other upstream 427866 40544863 ~ 40547513 (+) False G506281
TU574667 other upstream 716329 40257067 ~ 40259050 (+) True LOC110525949
TU574576 other upstream 771493 40196800 ~ 40203886 (+) True G506095
TU576412 other downstream 385103 41469551 ~ 41471408 (+) True G507768
TU577295 other downstream 1044777 42129225 ~ 42131940 (+) True G508559
TU577938 other downstream 1482657 42567105 ~ 42569384 (+) False G509160
TU577937 other downstream 1482800 42567248 ~ 42570169 (+) True G509160
TU579244 other downstream 2573020 43657468 ~ 43658493 (+) True G510416

Expression Profile