RNA id: XM_021606522.2


Basic Information

Item Value
RNA id XM_021606522.2
length 2517
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC110525974
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41458287 ~ 41461918 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCCTCCTTTCGGGCAGGCAGGAAAACAACACTGCTAGCATAAAAGGGAGAGCAGAGCGAGTTGAGGGTTGTTGTTCTTCCAGAAGCTACTGCTAGACCGAGCTGAGCCGACCGAGGGACTTTTTACTAGACACAGATCAAGCCTGCGGTGCAGCACCGTGATGTGGGTGGGACTAAGCCTGCTCCTGGCTCTCTGCCTGCTCCCTGGGGGCGGAAcagagagtgagggggaagggACCCGCTGTAAGCAGCCACCTGGTTGGAGTATTGGGGAGGTGGAGCCTATGAAGGAGGTCATGGGCCAGGTCACGGTGGTGGCCCTACTCCAGGCCAGTTGATTGTTCTGCTTGGTGCAGGCATCCTTATTGGATGGGCTGCGCCTGAAGCTGGAGGGTCAGGGTCTGGAGAATGTGACCTATATGGTGGTGAACCACCAGGGGGAGCAGGCCCAGCGCCTACACACCCTGCTGAGGCAGAAACTGTCTGAGAACATCACGCTATACAAACAACAGCCCAAACAGGAAGATgtgtggcagaccctggccggaGAGAAGGATGACTTCCTCATCTATGACAGaTGTGGTCGTCTGACCTACCATATCTCCCTGCCCTACTCCATCCTGGGTACTCCCTATGTAGAGAACGCCATCAAGGAGACCTACTGCACACGCGTCTGTGGGGACTGCACgtatgagAGCAAGGAGATCCCAGCAGAGTGCAACAGGACAGTAGAGGCAAAgcctgagggagaggagaagccAGTCACCGGAAGGGAGACAACTCATGGTGGACACGGCCATCATCACCATGGTCACGGTCACAATGGCAACCGCCATGGTCACAATGGCAACCGCCATGGTCACGATCACCATggtgagagggggatggggcgCGGTCACGGTCGTGATCATGGGGCCGAGCAGCAGCACCAACATGACACTGAGGGGCTCCAACACGGCCAGGCCCATGGCCAGTTGCACGTTGGTCAGGAGCATATGGGTCAGCAGGCAGTGCAACTGGGCCAGATGCCCCAGGAAGGGCAGCGAGGCCATATTATGCAGAATCCCTGAGTGAAGGGGAAGTCCAGGTGAAAGGCGGAGCACAGCTGACAGTGGAAGGAGGGGTCTGATCTAAGTCCCTCTTCCAAGGCCAGCTGATGCTGACACTGACGGAGGCTGTTTGGCGATGGGGTGAGCAACGAGCCAATCGGGCTCTGACACTGTGATGAGGCGCTGCCCGCCTCCTGACAGTGACAGGGACTGATAGGCCTCAGGGAGACCTGACAGTGACGCTCGTCCCTCGCTGACTGACAGCAGCCTCAGCCAGTCATGTGAGCCTGACCCCTGGGTGTTGAGAGCTGAGGGTGAGGGCTGCTGTAAGCAGGGCCATGGCTCTGTGACAGTTACCTTGCTATACCTTATAGGCCTCAGATTAACATCTGTGAGACAAACACCCGGGGCGAACCGCTCTTATAACATCTTACCAACTAGTATTACCCTGGGACCGTGAAGCCACCCCtgacagggagagatgggaggacacACATTGGGTGTGGTAGGTGAATGCCAAGCCTAAACCCATTACGATATGGGGGAAAGGATTGCATTTGAGATGTGACCATAGTGATGGCAAGGTGGGTGTCCTCCACCATCTCTGTCAGTGCGTTGGTGTCACCCTCCCAGGAGTGTATGGGGTGATTATGTTAACGTTTCTCCTGCTCTGTTTTGCTCCCTCCATCCACAGTGAAGGCAGGCGCAGAAACTACGCTCTAGTGGCGTCTGTCTGATGTCCGGCTGGGGAGAGGGGAACGGGAGGGACTTATAATATGACCACCCCCTAAAGTTCAAAATATCGAGAGCTTTGGAAGGAGTATGTAGTAGTAGTTGCCTATGCTGAACAAACTGGCATGATGGCTGGGAGAGATAGACCTGAACCAAAGTTGTTATACTCAGTGTTAGCAAAACCAATTTGGTCCAAATACATTATTGatagttcagattttttttattaggCCTCCAAAAAAATTGGGATCTCACTAACATTTTACTTTTGCAATTTAATTAACTCTCAGGTGTTTTGGAGCAGTAGTGTGTTATGTAGATAAAGCTTTCAAACGTCAGTATCCATTGCTTACAGCTGTGAGGATGTGTGTTTAGTTAGTCACTGAGTTATTTTAGTTTGGCAATATTGCACATATGTATAATGCACTCTTTGTGAACTAGCAAAACAGAGAACTGTTTTCAACTAACAAAATAGTGAACACTTTTTTTCGACTAACAAATGATCGGGAACACTTTTTAACTAGCAAAAGAAACCGTCTAGAATGAGAGGTGGGTAAACAGAAAAGATTGAACGATTGTTTGAATCCATTCTGTACTTAATGAAGGGCTCTAGGGGAAGACAACTGTCACCTAGAACACCTGATGCTTTGTACAGAACACGTTCATTCTGACTGTGGACTGTTAGGTGGTGTAGCATGTAAGAAATGCCGAATAAAGATGGTTGATGCACTCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU576339 lncRNA upstream 25009 41432136 ~ 41433278 (+) True G507699
TU576276 lncRNA upstream 181764 41276288 ~ 41276523 (+) True G507637
TU576275 lncRNA upstream 182852 41275095 ~ 41275435 (+) True G507636
TU576273 lncRNA upstream 184329 41273664 ~ 41273958 (+) True G507634
TU576271 lncRNA upstream 186158 41271902 ~ 41272129 (+) True G507632
TU576415 lncRNA downstream 17167 41479085 ~ 41479316 (+) True G507771
TU576417 lncRNA downstream 19428 41481346 ~ 41481658 (+) True G507773
TU576421 lncRNA downstream 24581 41486499 ~ 41486763 (+) True G507777
TU576426 lncRNA downstream 29035 41490953 ~ 41491220 (+) True G507782
TU576427 lncRNA downstream 30414 41492332 ~ 41492575 (+) True G507783
XR_002473854.2 mRNA upstream 270115 41182848 ~ 41188172 (+) True LOC110525969
XM_036980124.1 mRNA upstream 373839 40975379 ~ 41084448 (+) False efna5b
XM_036980123.1 mRNA upstream 373839 40975386 ~ 41084448 (+) True efna5b
XM_036980120.1 mRNA upstream 571860 40568641 ~ 40886427 (+) False fbxl17
XM_021606509.2 mRNA upstream 571860 40568646 ~ 40886427 (+) False fbxl17
XR_005052108.1 mRNA downstream 53821 41515739 ~ 41522572 (+) False LOC118964869
XM_021606527.2 mRNA downstream 109086 41571004 ~ 41677673 (+) False oxct1a
XM_021606528.2 mRNA downstream 114293 41576211 ~ 41677673 (+) True oxct1a
XM_021606530.2 mRNA downstream 216855 41678773 ~ 41700121 (+) True plcxd3
NM_001124407.1 mRNA downstream 261255 41723173 ~ 41729381 (+) True c7a
TU574791 other upstream 598765 40568726 ~ 40859522 (+) True fbxl17
TU574820 other upstream 891858 40566067 ~ 40566429 (+) True G506285
TU574816 other upstream 910774 40544863 ~ 40547513 (+) False G506281
TU574667 other upstream 1199237 40257067 ~ 40259050 (+) True LOC110525949
TU574576 other upstream 1254401 40196800 ~ 40203886 (+) True G506095
TU576412 other downstream 7633 41469551 ~ 41471408 (+) True G507768
TU577295 other downstream 667307 42129225 ~ 42131940 (+) True G508559
TU577938 other downstream 1105187 42567105 ~ 42569384 (+) False G509160
TU577937 other downstream 1105330 42567248 ~ 42570169 (+) True G509160
TU579244 other downstream 2195550 43657468 ~ 43658493 (+) True G510416

Expression Profile