RNA id: XM_021606531.2


Basic Information

Item Value
RNA id XM_021606531.2
length 1668
RNA type mRNA
GC content 0.44
exon number 6
gene id c6h5orf51
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41566051 ~ 41570657 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATAAAGACCTTTCATCACGTGAATAATCATAGCGTCACGTGACAGTGTATTTAGTCATGGCGGACGACTGCAGACGACAGGGGTTTGAGCTGGAGAGAAGGATTTTTGAGTTGGACAATAAGTGCGCCAGTCTCAGAACTGAGAAACAAGATGATGACTATTTACAGAATGCTTCTGCTATACTAGAAAAGTTGAAAAGCTTTTACAGACAAGGGGGAGAGAGTAGCAGTCTGCCTAAACTGCTTCAGGATTACACTCAGgtgatcCTGGACATCACGTTCTATGAGGAGAACAAGCTGGTGGACCAGGAGTTCCCAGAGGACTGCTCACCATTTAAGATCCAACAGCTGCTGCAGGACCTCACAGAGCCAGAGGTGTTGGCAGGGAGGCTGGCACCGGCCCAAGAGGTGCAGTCAGTCTTGGGGCTAGAGGTGTTGGAGTGCCTCTACTGGAGACGTGGAGCACTGCTCTACATGTACTGCCACACCCTCCACCAACGCAAGCAGTGGATCAAGAAGAACAAGGCCACTTTCCTCAAGTGTCTTCAGGAGGGTGTACGCTACCTGATGAGGATGCTGCAGGTGAGGAACTCTGTGAAGCTCAACGACGGGGTGGTGTTTCATGACTCTGCTACCGCCAACTTCCTGGCTGAAGGCATCTTTTCAGACACCCACCTGTTGACGATGATGTACATCGGGGAGATGTGTTTCTGGGCAGTGAAGTACGAGGACTGCAGCGTTGATTCCACAGAACGCAAAGAGGACCGGCTCCACTTCCGGGACATTGGGACACAGATCCTGCACAAATACGTGCTGGCCTGTGAGGGCCCTCTTCAGGGCCAGGGCTGGAACACTGAGAATGCCAAGGAGATCCTTAGTATCTTACAGTGAACTGGGGAGGGCTCTGTGTACAAGTTGCCCATAGGGACTGATATTGGATCAGATGCTCAAACCCCAAATTGTAATGCTAAGCattaagagagggggagggggaatctgaccttagatcagtttCTATGAGGAACTTTTTCCCGTTCTGAAAGGCTCCGGCTGAAATAGGTGGGCAAGGTTGGGGAAGAATGAAGGGGCAAGGGTATGGAGGGATGTTAACAATTTTATTCTCCGTGTCTCCTGAAAGAAGCACTTATCTTCCAGATTCTGGACTGTTGGACAGGCATGTGTTATGCTCTGAGAATGTGGTAGAATAATATTAAAAGATTAAGAAAATAACACATTGttacaaaaaataaaacaaagatTGTTTGAAGATTAATGATAATCCACCTGGTAATGAGACATCGCACAgcaactgtttttatttatttgtttttattttttttaaattaattgcatttatataaatatatattaaagTTAAGGTGGGGAATACACGGAGTTGGAGACTGATGGATTCATGAACATTTTCGAGTATGTACAGTTTTGTTTAAGATATCAGCTTTGTAATATGCGACTTCTTTTTCTCActtataaaacacattttttttgcccACACTTTGACAAGGAGTAATGTCCCAGTGATGGAAACTTTGATATTTTGATAGTATGCATTTAAATGGAGAATCTCTGTGGTGTTCATTTTGAAGGAAAAAGTTTTTCATTTAATTTTatgtcgtcattgaaaataaatactgtatgttggTTTCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU576851 lncRNA downstream 4364 41560765 ~ 41561687 (-) True G508141
TU576568 lncRNA downstream 25936 41521161 ~ 41540115 (-) True ghra
TU576626 lncRNA downstream 67641 41498140 ~ 41498410 (-) True G507961
TU576624 lncRNA downstream 71706 41494122 ~ 41494345 (-) True G507959
TU576622 lncRNA downstream 76019 41489749 ~ 41490032 (-) True G507957
TU576904 lncRNA upstream 74626 41645283 ~ 41689015 (-) True G508190
TU576944 lncRNA upstream 127561 41698218 ~ 41701127 (-) False G508222
TU576945 lncRNA upstream 127561 41698218 ~ 41701127 (-) False G508222
TU576948 lncRNA upstream 127561 41698218 ~ 41701127 (-) False G508222
TU576949 lncRNA upstream 127561 41698218 ~ 41701127 (-) False G508222
XM_021606529.2 mRNA downstream 58 41562084 ~ 41565993 (-) True fbxo4
XM_036980133.1 mRNA downstream 73 41562084 ~ 41565978 (-) False fbxo4
XM_021606524.2 mRNA downstream 25901 41474979 ~ 41540150 (-) False ghra
XM_021606520.2 mRNA downstream 106956 41431651 ~ 41459095 (-) False znf131
XM_021606517.2 mRNA downstream 126779 41431651 ~ 41439272 (-) False znf131
XM_021606533.2 mRNA upstream 164446 41735103 ~ 41752960 (-) True rgs7bpa
XM_021604989.2 mRNA upstream 188822 41759479 ~ 41769211 (-) True si:dkey-250l23.4
XM_021606535.2 mRNA upstream 319202 41889859 ~ 42124064 (-) False ipo11
XM_036980135.1 mRNA upstream 319202 41889859 ~ 42124064 (-) True ipo11
XM_021606537.2 mRNA upstream 558561 42129218 ~ 42138980 (-) False dph7
TU576563 other downstream 104129 41421024 ~ 41461922 (-) True G507906
TU576567 other downstream 127037 41434975 ~ 41439014 (-) True znf131
TU575676 other downstream 1023722 40540659 ~ 40542329 (-) True G507063
TU575349 other downstream 1676120 39887022 ~ 39889931 (-) True G506785
TU575314 other downstream 1727891 39837648 ~ 39838160 (-) True LOC110525932
TU577033 other upstream 250198 41820855 ~ 41821210 (-) True G508303
TU577652 other upstream 573440 42144097 ~ 42144885 (-) True G508891
TU577801 other upstream 801784 42372441 ~ 42403220 (-) False G509034
TU578229 other upstream 1072862 42643519 ~ 42645869 (-) True G509432
TU578716 other upstream 1506035 43076692 ~ 43077157 (-) True G509902

Expression Profile