RNA id: XR_005052109.1


Basic Information

Item Value
RNA id XR_005052109.1
length 1473
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC118964870
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41754679 ~ 41757203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccactaggctagtgaAAGACCTTGAGGAAGATGCAGGAATCCGGCAGAGTGTGAAAGGATACACTGATAATATGCTGGTGATTTTCTGTTGTTGCAGCTTAATTTGCTTACAgtagtgtgtctgtgttactAGCCTGGCCAGATGCCACTAAGCTGAGGTTTTATGAATTTATGTCACTCTGTCTCAGCACATATTTGGAGAGGTCCTGTGCCACATAGAAGTGGCCTTGGATGGACGCTACGCCGCCGTGAGACGAGCAGAGTGCAACCTGGGTAATCTGGTCATCTATGCCATGCTGGAGGCCACTCATGCTGAGGTGGCTTTTTTAAAACTCAGGGCTTGGAGAACGGAATCCGCAACTACCTTGCTCTGGATGGAAGATTTCCCCAGGTTTCTGGGATCCATTTTGGCTTTGATCTCATTGGAAAACCTGGCAGAGTCATCGCTGAGACTGTGAAGGTTCAAGGGCAACGATGACTACACCATGTTCAGTGGCGGACCTCATGGGCACATAAGGCACGTTTTATGAATTTATGTCACTCTGTCTCAGCACATGCTTGGAGAGGTCCTGTGCCACATAGACGTGGCCTTGGATGGATGCTACGCCGCCGTGAGACGAGCAGAGTGCAACCTGGGTAATCTGGTCATCTAGGCTATGCTGGAGGCCACTCATGCTGAGGTGGCTTTTTTAAACTCAGagcaGACTTGTTGAATACAGAAAGAGTTTGGCATCCAGGTTAGAAACAAGCCATCAATCAACAGGTGTAGgttcttcatttgatcactcttttgttactGCACAGTAGGAAATCAGAACCTGTCAACCGTCCTTATCAACCACTTTGAGTCTGGCCGTATAGTCAGATGCATGAAGAGGTGCAAGTCTGGTCACATGATGGGCCTTATCAAGGTGTCCACCACCCCCTCTGTGTCTGCCATTGAGAGATCCAAGAAtgagagtctggagggagaggtgggagtgGCTGTGGTGCCCGGAGTGGAGGGCAGGATATTCCACGTCCACCCTGAGGGCCATTCAGAAACAGAAAGCTAACAGTAGGCAGGGCTGTTCCTCGTCTGAGAATTCCACAGAGCAACTAAGCCAGGGCTCCATAGTCACCGTGGGAACCAGGGGACATTACATCAAGTCTTTTGCATCTCTCATCTACTGCTTGCTTTTATCAGCCTCATAAACAAGGCAGATTGTCAATAAACACAGAAACATGAGATTAAAGTCATTCATTGTATTACTTCCAGGAACATTGTGCAATTCATTGACATTGCACTCGAAATGACTCTAACTGTGAACATCGAAAACTAGTATATtaccaaaaatgtatttattttgaatGATAAGCAGAGAGGGTCTACATTTGTGACGTAAGACGGTGTTGGTGTATCAGTATTTGAATGGAGGAAATAAGAAGAAGTGTCTACATGTGTCCATGATAACATTACAGTAATAAAGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU576391 lncRNA upstream 197103 41553432 ~ 41557576 (+) True G507747
TU576392 lncRNA upstream 232112 41515545 ~ 41522567 (+) True LOC118964869
TU576441 lncRNA upstream 248501 41505901 ~ 41506178 (+) True G507797
TU576438 lncRNA upstream 254658 41499560 ~ 41500021 (+) True G507794
TU576434 lncRNA upstream 257942 41496387 ~ 41496737 (+) True G507790
TU576791 lncRNA downstream 28 41757231 ~ 41757833 (+) True G508104
TU577030 lncRNA downstream 62580 41819783 ~ 41820050 (+) True G508300
TU577031 lncRNA downstream 62936 41820139 ~ 41820424 (+) True G508301
TU577042 lncRNA downstream 69649 41826852 ~ 41827335 (+) True G508312
TU577085 lncRNA downstream 102381 41859584 ~ 41859819 (+) True G508355
NM_001124407.1 mRNA upstream 25298 41723173 ~ 41729381 (+) True c7a
XM_021606530.2 mRNA upstream 54558 41678773 ~ 41700121 (+) True plcxd3
XM_021606527.2 mRNA upstream 77006 41571004 ~ 41677673 (+) False oxct1a
XM_021606528.2 mRNA upstream 77006 41576211 ~ 41677673 (+) True oxct1a
XR_005052108.1 mRNA upstream 232107 41515739 ~ 41522572 (+) False LOC118964869
XM_021606534.2 mRNA downstream 14514 41771717 ~ 41773955 (+) True htr1aa
XM_036980136.1 mRNA downstream 379850 42137053 ~ 42143608 (+) False paxx
XM_021606540.2 mRNA downstream 381864 42139067 ~ 42143608 (+) False paxx
XM_021606539.2 mRNA downstream 381865 42139068 ~ 42143608 (+) True paxx
XM_021606542.2 mRNA downstream 487302 42244505 ~ 42249266 (+) True LOC110525988
TU576412 other upstream 283271 41469551 ~ 41471408 (+) True G507768
TU574791 other upstream 895157 40568726 ~ 40859522 (+) True fbxl17
TU574820 other upstream 1188250 40566067 ~ 40566429 (+) True G506285
TU574816 other upstream 1207166 40544863 ~ 40547513 (+) False G506281
TU574667 other upstream 1495629 40257067 ~ 40259050 (+) True LOC110525949
TU577295 other downstream 372022 42129225 ~ 42131940 (+) True G508559
TU577938 other downstream 809902 42567105 ~ 42569384 (+) False G509160
TU577937 other downstream 810045 42567248 ~ 42570169 (+) True G509160
TU579244 other downstream 1900265 43657468 ~ 43658493 (+) True G510416
TU581131 other downstream 3427236 45184439 ~ 45185869 (+) True G512192

Expression Profile